Rroxscaffold_2G00111290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016224
Physical Location & Seq
Forward (+)
35849340 .. 35849678
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00111290.1

Sequence Viewer

Length: 339 bp
ATGGAAGACAATGACCCGTGGCTAGGCCGAGACAAGCTCTATCATCTCCTCTTCTGCTTCTCACTCACCCTCCTCTTCTCCACATTAGCCGCGCAAACCCCCTACCCGTTTCTACGCCGCCACTCTATTCGGGTCGGATCACTCCTATCTCTCTCAGCCGGCGCCGCCAAGGAGTTCGCCGACGAGCTCGGCTTCTTCCACTCCTCCGGAGCCTCCGTTAAAGACGCCGTCGCCAATTTCCTCGGCGTCGTCATCGCTTCCCTCCTGCTTTATCTGCTTAACCACTTGGCCCGATCCGATAATGATGCGGGTCGGATCAAAGAGGTCTCCATCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.31

Weight (kDa)

6.39

Isoelectric Point (pI)

22.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2279 PF10043 7 - 89 8e-07 Predicted periplasmic lipoprotein (DUF2279)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016224)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15900
fragaria_vesca FvH4_6g28800
malus_domestica MD16G1196200.v1.1 MD17G1221700.v1.1
prunus_persica Prupe.3G096700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0133221
rosa_laevigata RLG00000019322
rosa_multiflora Rmu_sc0023254.1_g000005
rosa_roxburghii Rroxscaffold_2G00111290
rosa_rugosa Rorug02G0310800
rosa_samantha Rh2BG369000 Rh2CG346600 Rh2DG386000
rosa_wichuraiana Rw2G029530 Rw2G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 161
AccII CGCG 1 cut(s) 92
AccIII TCCGGA 1 cut(s) 206
AciI CCGC 4 cut(s) 90, 118, 165, 308
AclWI GGATC 3 cut(s) 145, 288, 323
AcyI GRCGYC 3 cut(s) 162, 225, 246
AfiI CCNNNNNNNGG 1 cut(s) 23
AluBI AGCT 2 cut(s) 37, 187
AluI AGCT 2 cut(s) 37, 187
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 2 cut(s) 24, 331
AlwI GGATC 3 cut(s) 145, 288, 323
Aor13HI TCCGGA 1 cut(s) 206
AoxI GGCC 2 cut(s) 25, 288
AspLEI GCGC 2 cut(s) 94, 164
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 1 cut(s) 58
BanI GGYRCC 1 cut(s) 161
BanII GRGCYC 1 cut(s) 189
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 189
BccI CCATC 1 cut(s) 338
BceAI ACGGC 1 cut(s) 212
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BcoDI GTCTC 2 cut(s) 24, 331
BfaI CTAG 1 cut(s) 23
BfoI RGCGCY 1 cut(s) 165
BisI GCNGC 3 cut(s) 90, 118, 165
BlsI GCNGC 3 cut(s) 91, 119, 166
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 2 cut(s) 163, 211
BmsI GCATC 1 cut(s) 295
BpiI GAAGAC 1 cut(s) 12
BplI GAGNNNNNCTC 2 cut(s) 21, 53
BsaHI GRCGYC 3 cut(s) 162, 225, 246
BsaI GGTCTC 1 cut(s) 331
BsaJI CCNNGG 3 cut(s) 17, 168, 241
BsaWI WCCGGW 1 cut(s) 206
BsaXI ACNNNNNCTCC 4 cut(s) 54, 84, 201, 231
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse118I RCCGGY 1 cut(s) 158
BseAI TCCGGA 1 cut(s) 206
BseDI CCNNGG 3 cut(s) 17, 168, 241
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMII CTCAG 1 cut(s) 168
BseRI GAGGAG 3 cut(s) 38, 62, 193
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 2 cut(s) 27, 290
BshNI GGYRCC 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 189
BsiSI CCGG 2 cut(s) 159, 207
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 2 cut(s) 24, 331
BsnI GGCC 2 cut(s) 27, 290
Bso31I GGTCTC 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 189
Bsp13I TCCGGA 1 cut(s) 206
Bsp143I GATC 3 cut(s) 137, 293, 315
BspACI CCGC 4 cut(s) 90, 118, 165, 308
BspANI GGCC 2 cut(s) 27, 290
BspCNI CTCAG 1 cut(s) 167
BspEI TCCGGA 1 cut(s) 206
BspFNI CGCG 1 cut(s) 92
BspLI GGNNCC 2 cut(s) 163, 211
BspPI GGATC 3 cut(s) 145, 288, 323
BspT107I GGYRCC 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 331
BsrFI RCCGGY 1 cut(s) 158
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 3 cut(s) 17, 168, 241
BssMI GATC 3 cut(s) 137, 293, 315
BssNI GRCGYC 3 cut(s) 162, 225, 246
BssT1I CCWWGG 1 cut(s) 168
Bst6I CTCTTC 2 cut(s) 56, 80
BstACI GRCGYC 3 cut(s) 162, 225, 246
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 154
BstDSI CCRYGG 1 cut(s) 17
BstFNI CGCG 1 cut(s) 92
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 2 cut(s) 94, 164
BstKTI GATC 3 cut(s) 140, 296, 318
BstMAI GTCTC 2 cut(s) 24, 331
BstMBI GATC 3 cut(s) 137, 293, 315
BstMWI GCNNNNNNNGC 2 cut(s) 164, 274
BstUI CGCG 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 12
BsuRI GGCC 2 cut(s) 27, 290
BtgI CCRYGG 1 cut(s) 17
BtgZI GCGATG 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 160
CfoI GCGC 2 cut(s) 94, 164
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 289
CseI GACGC 2 cut(s) 233, 235
CviJI RGCY 9 cut(s) 22, 27, 37, 89, 158, 187, 192, 212, 290
CviKI_1 RGCY 9 cut(s) 22, 27, 37, 89, 158, 187, 192, 212, 290
DdeI CTNAG 1 cut(s) 154
DinI GGCGCC 1 cut(s) 163
DpnI GATC 3 cut(s) 139, 295, 317
DpnII GATC 3 cut(s) 137, 293, 315
Eam1104I CTCTTC 2 cut(s) 56, 80
EarI CTCTTC 2 cut(s) 56, 80
Ecl136II GAGCTC 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 189
Eco31I GGTCTC 1 cut(s) 331
Eco53kI GAGCTC 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 168
EcoT38I GRGCYC 1 cut(s) 189
EgeI GGCGCC 1 cut(s) 163
EheI GGCGCC 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 168
FauI CCCGC 1 cut(s) 301
Fnu4HI GCNGC 3 cut(s) 90, 118, 165
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 3 cut(s) 90, 118, 165
FspBI CTAG 1 cut(s) 23
GlaI GCGC 2 cut(s) 93, 163
GluI GCNGC 3 cut(s) 90, 118, 165
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 2 cut(s) 27, 290
HapII CCGG 2 cut(s) 159, 207
HgaI GACGC 2 cut(s) 233, 235
HhaI GCGC 2 cut(s) 94, 164
Hin1I GRCGYC 3 cut(s) 162, 225, 246
Hin6I GCGC 2 cut(s) 92, 162
HinP1I GCGC 2 cut(s) 92, 162
HpaII CCGG 2 cut(s) 159, 207
HphI GGTGA 1 cut(s) 58
Hpy188I TCNGA 4 cut(s) 137, 298, 315, 338
Hpy188III TCNNGA 1 cut(s) 207
Hpy99I CGWCG 3 cut(s) 185, 233, 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 274
HpyF3I CTNAG 1 cut(s) 154
Hsp92I GRCGYC 3 cut(s) 162, 225, 246
HspAI GCGC 2 cut(s) 92, 162
KasI GGCGCC 1 cut(s) 161
Kpn2I TCCGGA 1 cut(s) 206
KroI GCCGGC 1 cut(s) 158
KroNI GCCGGC 1 cut(s) 160
Kzo9I GATC 3 cut(s) 137, 293, 315
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 3 cut(s) 172, 220, 278
LweI GCATC 1 cut(s) 295
MaeI CTAG 1 cut(s) 23
MalI GATC 3 cut(s) 139, 295, 317
MboI GATC 3 cut(s) 137, 293, 315
MboII GAAGA 4 cut(s) 17, 43, 67, 187
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 1 cut(s) 235
Mly113I GGCGCC 1 cut(s) 162
MmeI TCCRAC 2 cut(s) 115, 293
MnlI CCTC 8 cut(s) 59, 80, 83, 214, 223, 251, 272, 316
MroI TCCGGA 1 cut(s) 206
MroNI GCCGGC 1 cut(s) 158
MseI TTAA 2 cut(s) 219, 279
MspI CCGG 2 cut(s) 159, 207
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 164, 274
NaeI GCCGGC 1 cut(s) 160
NarI GGCGCC 1 cut(s) 162
NdeII GATC 3 cut(s) 137, 293, 315
NgoMIV GCCGGC 1 cut(s) 158
NlaIV GGNNCC 2 cut(s) 163, 211
NmeAIII GCCGAG 3 cut(s) 53, 168, 222
PdiI GCCGGC 1 cut(s) 160
PflFI GACNNNGTC 1 cut(s) 227
PkrI GCNGC 3 cut(s) 91, 119, 166
PluTI GGCGCC 1 cut(s) 165
Psp124BI GAGCTC 1 cut(s) 189
PspN4I GGNNCC 2 cut(s) 163, 211
PspPI GGNCC 1 cut(s) 289
PsyI GACNNNGTC 1 cut(s) 227
SacI GAGCTC 1 cut(s) 189
SaqAI TTAA 2 cut(s) 219, 279
SatI GCNGC 3 cut(s) 90, 118, 165
Sau3AI GATC 3 cut(s) 137, 293, 315
Sau96I GGNCC 1 cut(s) 289
SduI GDGCHC 1 cut(s) 189
SetI ASST 3 cut(s) 39, 189, 327
SfaNI GCATC 1 cut(s) 295
SfoI GGCGCC 1 cut(s) 163
Sse9I AATT 1 cut(s) 235
SsiI CCGC 4 cut(s) 90, 118, 165, 308
SspDI GGCGCC 1 cut(s) 161
SspMI CTAG 1 cut(s) 23
SstI GAGCTC 1 cut(s) 189
StyI CCWWGG 1 cut(s) 168
TasI AATT 1 cut(s) 235
TauI GCSGC 3 cut(s) 92, 120, 167
Tru1I TTAA 2 cut(s) 219, 279
Tru9I TTAA 2 cut(s) 219, 279
TspGWI ACGGA 1 cut(s) 205
Tth111I GACNNNGTC 1 cut(s) 227
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.