FvH4_6g28800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016224
Physical Location & Seq
Reverse (-)
22209767 .. 22211024
1258 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28800.t1

Sequence Viewer

Length: 339 bp
ATGGAGGACAATGACTCGTGGCTAGCCCGAGACAAGCTCTATCACTTCCTCTTCTGCTTCTCTCTCACTCTCTTCTTCTCCACATTCGTCGCCCGAACCCCTTACCCGTTTCTACGTCGCCACTCTATTCGGGTCGGGTCACTCTTATCTCTCTTAGCCGGCGCCGCCAAGGAGTTCGCCGACGAGCTCGGCTTCTTCCACTCCGCCGGCGCCTCCGCTAAAGACGCCGTCGCCAATTTCATCGGCGTCGTCGTCGCTTCGCTCCTGCTTTCTCTGGTTCGATACTTGGCCCGATCCGATAATGAGGCGGGTCGGATCAAAGAGCTCAACATGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.49

Weight (kDa)

7.93

Isoelectric Point (pI)

23.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016224)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15900
fragaria_vesca FvH4_6g28800
malus_domestica MD16G1196200.v1.1 MD17G1221700.v1.1
prunus_persica Prupe.3G096700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0133221
rosa_laevigata RLG00000019322
rosa_multiflora Rmu_sc0023254.1_g000005
rosa_roxburghii Rroxscaffold_2G00111290
rosa_rugosa Rorug02G0310800
rosa_samantha Rh2BG369000 Rh2CG346600 Rh2DG386000
rosa_wichuraiana Rw2G029530 Rw2G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 161, 209
AciI CCGC 4 cut(s) 165, 204, 216, 308
AclWI GGATC 2 cut(s) 288, 323
AcyI GRCGYC 4 cut(s) 162, 210, 225, 246
AluBI AGCT 3 cut(s) 37, 187, 325
AluI AGCT 3 cut(s) 37, 187, 325
Alw21I GWGCWC 2 cut(s) 189, 327
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 2 cut(s) 288, 323
Ama87I CYCGRG 1 cut(s) 27
AoxI GGCC 1 cut(s) 288
AspLEI GCGC 2 cut(s) 164, 212
AspS9I GGNCC 1 cut(s) 289
AsuNHI GCTAGC 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 27
BanI GGYRCC 2 cut(s) 161, 209
BanII GRGCYC 2 cut(s) 189, 327
BauI CACGAG 1 cut(s) 16
Bbv12I GWGCWC 2 cut(s) 189, 327
BceAI ACGGC 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 1 cut(s) 23
BfoI RGCGCY 2 cut(s) 165, 213
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
BmeT110I CYCGRG 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 2 cut(s) 163, 211
BmtI GCTAGC 1 cut(s) 26
BplI GAGNNNNNCTC 2 cut(s) 21, 53
BsaHI GRCGYC 4 cut(s) 162, 210, 225, 246
BsaJI CCNNGG 1 cut(s) 168
Bse118I RCCGGY 2 cut(s) 158, 206
BseDI CCNNGG 1 cut(s) 168
BshFI GGCC 1 cut(s) 290
BshNI GGYRCC 2 cut(s) 161, 209
BsiHKAI GWGCWC 2 cut(s) 189, 327
BsiHKCI CYCGRG 1 cut(s) 27
BsiSI CCGG 2 cut(s) 159, 207
BsmAI GTCTC 1 cut(s) 24
BsnI GGCC 1 cut(s) 290
BsoBI CYCGRG 1 cut(s) 27
Bsp1286I GDGCHC 2 cut(s) 189, 327
Bsp143I GATC 2 cut(s) 293, 315
BspACI CCGC 4 cut(s) 165, 204, 216, 308
BspANI GGCC 1 cut(s) 290
BspLI GGNNCC 2 cut(s) 163, 211
BspOI GCTAGC 1 cut(s) 26
BspPI GGATC 2 cut(s) 288, 323
BspT107I GGYRCC 2 cut(s) 161, 209
BsrFI RCCGGY 2 cut(s) 158, 206
BssAI RCCGGY 2 cut(s) 158, 206
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 2 cut(s) 293, 315
BssNI GRCGYC 4 cut(s) 162, 210, 225, 246
BssSI CACGAG 1 cut(s) 16
BssT1I CCWWGG 1 cut(s) 168
Bst2BI CACGAG 1 cut(s) 16
Bst6I CTCTTC 2 cut(s) 56, 77
BstACI GRCGYC 4 cut(s) 162, 210, 225, 246
BstC8I GCNNGC 3 cut(s) 24, 160, 208
BstDEI CTNAG 1 cut(s) 154
BstH2I RGCGCY 2 cut(s) 165, 213
BstHHI GCGC 2 cut(s) 164, 212
BstKTI GATC 2 cut(s) 296, 318
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 2 cut(s) 293, 315
BstMWI GCNNNNNNNGC 2 cut(s) 164, 224
BsuRI GGCC 1 cut(s) 290
Cac8I GCNNGC 3 cut(s) 24, 160, 208
CfoI GCGC 2 cut(s) 164, 212
Cfr10I RCCGGY 2 cut(s) 158, 206
Cfr13I GGNCC 1 cut(s) 289
CseI GACGC 2 cut(s) 233, 235
CviAII CATG 1 cut(s) 331
CviJI RGCY 8 cut(s) 22, 26, 37, 158, 187, 192, 290, 325
CviKI_1 RGCY 8 cut(s) 22, 26, 37, 158, 187, 192, 290, 325
DdeI CTNAG 1 cut(s) 154
DinI GGCGCC 2 cut(s) 163, 211
DpnI GATC 2 cut(s) 295, 317
DpnII GATC 2 cut(s) 293, 315
Eam1104I CTCTTC 2 cut(s) 56, 77
EarI CTCTTC 2 cut(s) 56, 77
EciI GGCGGA 1 cut(s) 193
Ecl136II GAGCTC 2 cut(s) 187, 325
Eco130I CCWWGG 1 cut(s) 168
Eco24I GRGCYC 2 cut(s) 189, 327
Eco53kI GAGCTC 2 cut(s) 187, 325
Eco88I CYCGRG 1 cut(s) 27
EcoICRI GAGCTC 2 cut(s) 187, 325
EcoT14I CCWWGG 1 cut(s) 168
EcoT38I GRGCYC 2 cut(s) 189, 327
EgeI GGCGCC 2 cut(s) 163, 211
EheI GGCGCC 2 cut(s) 163, 211
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 1 cut(s) 334
FaiI YATR 1 cut(s) 332
FatI CATG 1 cut(s) 330
FauI CCCGC 1 cut(s) 301
Fnu4HI GCNGC 1 cut(s) 165
FriOI GRGCYC 2 cut(s) 189, 327
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 1 cut(s) 23
GlaI GCGC 2 cut(s) 163, 211
GluI GCNGC 1 cut(s) 165
HaeII RGCGCY 2 cut(s) 165, 213
HaeIII GGCC 1 cut(s) 290
HapII CCGG 2 cut(s) 159, 207
HgaI GACGC 2 cut(s) 233, 235
HhaI GCGC 2 cut(s) 164, 212
Hin1I GRCGYC 4 cut(s) 162, 210, 225, 246
Hin1II CATG 1 cut(s) 334
Hin6I GCGC 2 cut(s) 162, 210
HinP1I GCGC 2 cut(s) 162, 210
HinfI GANTC 1 cut(s) 14
HpaII CCGG 2 cut(s) 159, 207
Hpy188I TCNGA 2 cut(s) 298, 315
Hpy99I CGWCG 7 cut(s) 92, 120, 185, 233, 251, 254, 257
HpyCH4IV ACGT 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 224
HpyF3I CTNAG 1 cut(s) 154
HpySE526I ACGT 1 cut(s) 115
Hsp92I GRCGYC 4 cut(s) 162, 210, 225, 246
Hsp92II CATG 1 cut(s) 334
HspAI GCGC 2 cut(s) 162, 210
KasI GGCGCC 2 cut(s) 161, 209
KroI GCCGGC 2 cut(s) 158, 206
KroNI GCCGGC 2 cut(s) 160, 208
Kzo9I GATC 2 cut(s) 293, 315
LmnI GCTCC 1 cut(s) 267
LpnPI CCDG 4 cut(s) 172, 220, 260, 278
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 115
MaeIII GTNAC 1 cut(s) 138
MalI GATC 2 cut(s) 295, 317
MboI GATC 2 cut(s) 293, 315
MboII GAAGA 4 cut(s) 43, 64, 67, 187
MhlI GDGCHC 2 cut(s) 189, 327
MluCI AATT 1 cut(s) 235
Mly113I GGCGCC 2 cut(s) 162, 210
MlyI GAGTC 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 293
MnlI CCTC 3 cut(s) 59, 223, 298
MreI CGCCGGCG 1 cut(s) 206
MroNI GCCGGC 2 cut(s) 158, 206
MspI CCGG 2 cut(s) 159, 207
MwoI GCNNNNNNNGC 2 cut(s) 164, 224
NaeI GCCGGC 2 cut(s) 160, 208
NarI GGCGCC 2 cut(s) 162, 210
NdeII GATC 2 cut(s) 293, 315
NgoMIV GCCGGC 2 cut(s) 158, 206
NheI GCTAGC 1 cut(s) 22
NlaIII CATG 1 cut(s) 334
NlaIV GGNNCC 2 cut(s) 163, 211
NmeAIII GCCGAG 1 cut(s) 168
NmuCI GTSAC 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PdiI GCCGGC 2 cut(s) 160, 208
PflFI GACNNNGTC 1 cut(s) 227
PkrI GCNGC 1 cut(s) 166
PleI GAGTC 1 cut(s) 8
PluTI GGCGCC 2 cut(s) 165, 213
PpsI GAGTC 1 cut(s) 8
Psp124BI GAGCTC 2 cut(s) 189, 327
PspN4I GGNNCC 2 cut(s) 163, 211
PspPI GGNCC 1 cut(s) 289
PsyI GACNNNGTC 1 cut(s) 227
SacI GAGCTC 2 cut(s) 189, 327
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 2 cut(s) 293, 315
Sau96I GGNCC 1 cut(s) 289
SchI GAGTC 1 cut(s) 8
SduI GDGCHC 2 cut(s) 189, 327
SetI ASST 4 cut(s) 39, 118, 189, 327
SfoI GGCGCC 2 cut(s) 163, 211
SgrAI CRCCGGYG 1 cut(s) 206
Sse9I AATT 1 cut(s) 235
SsiI CCGC 4 cut(s) 165, 204, 216, 308
SspDI GGCGCC 2 cut(s) 161, 209
SspMI CTAG 1 cut(s) 23
SstI GAGCTC 2 cut(s) 189, 327
StyI CCWWGG 1 cut(s) 168
TaiI ACGT 1 cut(s) 118
TaqI TCGA 1 cut(s) 280
TasI AATT 1 cut(s) 235
TauI GCSGC 1 cut(s) 167
TseFI GTSAC 1 cut(s) 138
Tsp45I GTSAC 1 cut(s) 138
TspDTI ATGAA 1 cut(s) 229
Tth111I GACNNNGTC 1 cut(s) 227
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.