Rh2DG386000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0016224
Physical Location & Seq
Reverse (-)
55859925 .. 55860263
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG386000.1

Sequence Viewer

Length: 339 bp
ATGGAAGACAATGACCCGTGGCTAGCCCGAGACAAGCTCTATCATCTCCTCTTCTGCTTCTCTCTCACCCTCCTCTTCTCCACATTAGCCGCGCAAGCCCCTTACCCGTTTCTACGCCGCCACTCTATTCGGGTCGGATCACTCCTATCTCTCTCAGCCGGCGCCGCCAAGGAGTTCGCCGACGAGCTGGGATTCTTCCACTCCGCCGGAGCCTCCGTTAAAGACGCCGTTGCCAATTTCCTCGGCGTCGTCATCGCTTCCCTCCTGCTTTATCTGCTTAACTACTTTGCCCGATCCGATAATGAGGCGGGTCGGATCAAACAGGTCTCCATCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.35

Weight (kDa)

6.82

Isoelectric Point (pI)

24.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016224)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15900
fragaria_vesca FvH4_6g28800
malus_domestica MD16G1196200.v1.1 MD17G1221700.v1.1
prunus_persica Prupe.3G096700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0133221
rosa_laevigata RLG00000019322
rosa_multiflora Rmu_sc0023254.1_g000005
rosa_roxburghii Rroxscaffold_2G00111290
rosa_rugosa Rorug02G0310800
rosa_samantha Rh2BG369000 Rh2CG346600 Rh2DG386000
rosa_wichuraiana Rw2G029530 Rw2G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 161
AccII CGCG 1 cut(s) 92
AciI CCGC 5 cut(s) 90, 118, 165, 204, 308
AclWI GGATC 3 cut(s) 145, 288, 323
AcyI GRCGYC 3 cut(s) 162, 225, 246
AluBI AGCT 2 cut(s) 37, 187
AluI AGCT 2 cut(s) 37, 187
Alw26I GTCTC 2 cut(s) 24, 331
AlwI GGATC 3 cut(s) 145, 288, 323
Ama87I CYCGRG 1 cut(s) 27
AspLEI GCGC 2 cut(s) 94, 164
AsuHPI GGTGA 1 cut(s) 58
AsuNHI GCTAGC 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 27
BanI GGYRCC 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 12
BccI CCATC 1 cut(s) 338
BceAI ACGGC 1 cut(s) 212
BcoDI GTCTC 2 cut(s) 24, 331
BfaI CTAG 1 cut(s) 23
BfoI RGCGCY 1 cut(s) 165
BisI GCNGC 3 cut(s) 90, 118, 165
BlsI GCNGC 3 cut(s) 91, 119, 166
BmeT110I CYCGRG 1 cut(s) 27
BmiI GGNNCC 2 cut(s) 163, 211
BmtI GCTAGC 1 cut(s) 26
BpiI GAAGAC 1 cut(s) 12
BplI GAGNNNNNCTC 2 cut(s) 21, 53
BsaHI GRCGYC 3 cut(s) 162, 225, 246
BsaI GGTCTC 1 cut(s) 331
BsaJI CCNNGG 3 cut(s) 17, 168, 241
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bse118I RCCGGY 1 cut(s) 158
BseDI CCNNGG 3 cut(s) 17, 168, 241
BseMII CTCAG 1 cut(s) 168
BseRI GAGGAG 2 cut(s) 38, 62
BseYI CCCAGC 1 cut(s) 187
Bsh1236I CGCG 1 cut(s) 92
BshNI GGYRCC 1 cut(s) 161
BsiHKCI CYCGRG 1 cut(s) 27
BsiSI CCGG 2 cut(s) 159, 207
BsmAI GTCTC 2 cut(s) 24, 331
Bso31I GGTCTC 1 cut(s) 331
BsoBI CYCGRG 1 cut(s) 27
Bsp143I GATC 3 cut(s) 137, 293, 315
BspACI CCGC 5 cut(s) 90, 118, 165, 204, 308
BspCNI CTCAG 1 cut(s) 167
BspFNI CGCG 1 cut(s) 92
BspLI GGNNCC 2 cut(s) 163, 211
BspOI GCTAGC 1 cut(s) 26
BspPI GGATC 3 cut(s) 145, 288, 323
BspT107I GGYRCC 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 331
BsrFI RCCGGY 1 cut(s) 158
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 3 cut(s) 17, 168, 241
BssMI GATC 3 cut(s) 137, 293, 315
BssNI GRCGYC 3 cut(s) 162, 225, 246
BssT1I CCWWGG 1 cut(s) 168
Bst6I CTCTTC 2 cut(s) 56, 80
BstACI GRCGYC 3 cut(s) 162, 225, 246
BstC8I GCNNGC 3 cut(s) 24, 96, 160
BstDEI CTNAG 1 cut(s) 154
BstDSI CCRYGG 1 cut(s) 17
BstFNI CGCG 1 cut(s) 92
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 2 cut(s) 94, 164
BstKTI GATC 3 cut(s) 140, 296, 318
BstMAI GTCTC 2 cut(s) 24, 331
BstMBI GATC 3 cut(s) 137, 293, 315
BstMWI GCNNNNNNNGC 3 cut(s) 95, 164, 274
BstUI CGCG 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 12
BtgI CCRYGG 1 cut(s) 17
BtgZI GCGATG 1 cut(s) 238
Cac8I GCNNGC 3 cut(s) 24, 96, 160
CfoI GCGC 2 cut(s) 94, 164
Cfr10I RCCGGY 1 cut(s) 158
CseI GACGC 2 cut(s) 233, 235
CviJI RGCY 8 cut(s) 22, 26, 37, 89, 98, 158, 187, 212
CviKI_1 RGCY 8 cut(s) 22, 26, 37, 89, 98, 158, 187, 212
DdeI CTNAG 1 cut(s) 154
DinI GGCGCC 1 cut(s) 163
DpnI GATC 3 cut(s) 139, 295, 317
DpnII GATC 3 cut(s) 137, 293, 315
Eam1104I CTCTTC 2 cut(s) 56, 80
EarI CTCTTC 2 cut(s) 56, 80
EciI GGCGGA 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 168
Eco31I GGTCTC 1 cut(s) 331
Eco88I CYCGRG 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 168
EgeI GGCGCC 1 cut(s) 163
EheI GGCGCC 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 168
FauI CCCGC 1 cut(s) 301
Fnu4HI GCNGC 3 cut(s) 90, 118, 165
Fsp4HI GCNGC 3 cut(s) 90, 118, 165
FspBI CTAG 1 cut(s) 23
GlaI GCGC 2 cut(s) 93, 163
GluI GCNGC 3 cut(s) 90, 118, 165
GsaI CCCAGC 1 cut(s) 191
HaeII RGCGCY 1 cut(s) 165
HapII CCGG 2 cut(s) 159, 207
HgaI GACGC 2 cut(s) 233, 235
HhaI GCGC 2 cut(s) 94, 164
Hin1I GRCGYC 3 cut(s) 162, 225, 246
Hin6I GCGC 2 cut(s) 92, 162
HinP1I GCGC 2 cut(s) 92, 162
HinfI GANTC 1 cut(s) 192
HpaII CCGG 2 cut(s) 159, 207
HphI GGTGA 1 cut(s) 58
Hpy188I TCNGA 4 cut(s) 137, 298, 315, 338
Hpy99I CGWCG 2 cut(s) 185, 251
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 164, 274
HpyF3I CTNAG 1 cut(s) 154
Hsp92I GRCGYC 3 cut(s) 162, 225, 246
HspAI GCGC 2 cut(s) 92, 162
KasI GGCGCC 1 cut(s) 161
KroI GCCGGC 1 cut(s) 158
KroNI GCCGGC 1 cut(s) 160
Kzo9I GATC 3 cut(s) 137, 293, 315
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 5 cut(s) 172, 173, 220, 278, 308
MaeI CTAG 1 cut(s) 23
MalI GATC 3 cut(s) 139, 295, 317
MboI GATC 3 cut(s) 137, 293, 315
MboII GAAGA 4 cut(s) 17, 43, 67, 187
MluCI AATT 1 cut(s) 235
Mly113I GGCGCC 1 cut(s) 162
MmeI TCCRAC 2 cut(s) 115, 293
MnlI CCTC 7 cut(s) 59, 80, 83, 223, 251, 272, 298
MroNI GCCGGC 1 cut(s) 158
MseI TTAA 2 cut(s) 219, 279
MspI CCGG 2 cut(s) 159, 207
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 3 cut(s) 95, 164, 274
NaeI GCCGGC 1 cut(s) 160
NarI GGCGCC 1 cut(s) 162
NdeII GATC 3 cut(s) 137, 293, 315
NgoMIV GCCGGC 1 cut(s) 158
NheI GCTAGC 1 cut(s) 22
NlaIV GGNNCC 2 cut(s) 163, 211
NmeAIII GCCGAG 1 cut(s) 222
PdiI GCCGGC 1 cut(s) 160
PfeI GAWTC 1 cut(s) 192
PkrI GCNGC 3 cut(s) 91, 119, 166
PluTI GGCGCC 1 cut(s) 165
PspFI CCCAGC 1 cut(s) 187
PspN4I GGNNCC 2 cut(s) 163, 211
SaqAI TTAA 2 cut(s) 219, 279
SatI GCNGC 3 cut(s) 90, 118, 165
Sau3AI GATC 3 cut(s) 137, 293, 315
SetI ASST 3 cut(s) 39, 189, 327
SfoI GGCGCC 1 cut(s) 163
Sse9I AATT 1 cut(s) 235
SsiI CCGC 5 cut(s) 90, 118, 165, 204, 308
SspDI GGCGCC 1 cut(s) 161
SspMI CTAG 1 cut(s) 23
StyI CCWWGG 1 cut(s) 168
TasI AATT 1 cut(s) 235
TauI GCSGC 3 cut(s) 92, 120, 167
TfiI GAWTC 1 cut(s) 192
Tru1I TTAA 2 cut(s) 219, 279
Tru9I TTAA 2 cut(s) 219, 279
TspGWI ACGGA 1 cut(s) 205
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.