Prupe.3G096700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016224
Physical Location & Seq
Reverse (-)
7315480 .. 7315818
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G096700.1

Sequence Viewer

Length: 339 bp
ATGGACGACAATGATCCGTGGTTAGCCCCAGACAAGCTTCACCATGTTCTCTTCTGCTTCTCTTTCACCCTCGTCTTCTCCACATTAGCCGCCCGAACCCGGTATCCGTTTCTACGTCGTCACTCTATTCGGGTCGGATCCATTCTCTCTCTCTTAGCCGGCGCAGCCAAGGAGTTCGCGGACGAGCTCGGGTTCTTCAGGTCCGCCGGAGCCTCCGCTAAAGACGCCGCCGCCGATATCCTCGGCGTCCTGATCGGTTCCCTTGTGCTATATTTGATTAAGTACACGACTCGACCCGAGAATGAGACGGGTCGGATCAAAGAGGATTCGATGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.41

Weight (kDa)

6.82

Isoelectric Point (pI)

28.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016224)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15900
fragaria_vesca FvH4_6g28800
malus_domestica MD16G1196200.v1.1 MD17G1221700.v1.1
prunus_persica Prupe.3G096700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0133221
rosa_laevigata RLG00000019322
rosa_multiflora Rmu_sc0023254.1_g000005
rosa_roxburghii Rroxscaffold_2G00111290
rosa_rugosa Rorug02G0310800
rosa_samantha Rh2BG369000 Rh2CG346600 Rh2DG386000
rosa_wichuraiana Rw2G029530 Rw2G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 179
AciI CCGC 6 cut(s) 90, 179, 204, 216, 228, 231
AclWI GGATC 4 cut(s) 8, 132, 145, 323
AcuI CTGAAG 1 cut(s) 181
AcyI GRCGYC 2 cut(s) 225, 246
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 1 cut(s) 99
AloI GAACNNNNNNTCC 2 cut(s) 88, 120
AluBI AGCT 2 cut(s) 37, 187
AluI AGCT 2 cut(s) 37, 187
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 1 cut(s) 299
AlwI GGATC 4 cut(s) 8, 132, 145, 323
Ama87I CYCGRG 2 cut(s) 188, 296
ApeKI GCWGC 1 cut(s) 164
AspLEI GCGC 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 201
AsuC2I CCSGG 1 cut(s) 100
AsuHPI GGTGA 2 cut(s) 32, 58
AvaI CYCGRG 2 cut(s) 188, 296
AvaII GGWCC 1 cut(s) 201
BamHI GGATCC 1 cut(s) 137
BanII GRGCYC 1 cut(s) 189
BbsI GAAGAC 1 cut(s) 67
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 176
BccI CCATC 1 cut(s) 325
BciVI GTATCC 1 cut(s) 114
BcnI CCSGG 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 299
BfuI GTATCC 1 cut(s) 114
BisI GCNGC 4 cut(s) 90, 165, 228, 231
BlsI GCNGC 4 cut(s) 91, 166, 229, 232
Bme1390I CCNGG 1 cut(s) 100
Bme18I GGWCC 1 cut(s) 201
BmeT110I CYCGRG 2 cut(s) 188, 296
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 3 cut(s) 139, 211, 259
BmrFI CCNGG 1 cut(s) 100
BpiI GAAGAC 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 100
BsaHI GRCGYC 2 cut(s) 225, 246
BsaJI CCNNGG 3 cut(s) 17, 168, 241
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse118I RCCGGY 1 cut(s) 158
BseDI CCNNGG 3 cut(s) 17, 168, 241
BseLI CCNNNNNNNGG 1 cut(s) 99
BseXI GCAGC 1 cut(s) 176
Bsh1236I CGCG 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 189
BsiHKCI CYCGRG 2 cut(s) 188, 296
BsiSI CCGG 3 cut(s) 100, 159, 207
BslI CCNNNNNNNGG 1 cut(s) 99
BsmAI GTCTC 1 cut(s) 299
BsmBI CGTCTC 1 cut(s) 299
BsoBI CYCGRG 2 cut(s) 188, 296
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 4 cut(s) 13, 137, 252, 315
BspACI CCGC 6 cut(s) 90, 179, 204, 216, 228, 231
BspFNI CGCG 1 cut(s) 179
BspLI GGNNCC 3 cut(s) 139, 211, 259
BspPI GGATC 4 cut(s) 8, 132, 145, 323
BsrFI RCCGGY 1 cut(s) 158
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 3 cut(s) 17, 168, 241
BssMI GATC 4 cut(s) 13, 137, 252, 315
BssNI GRCGYC 2 cut(s) 225, 246
BssT1I CCWWGG 1 cut(s) 168
Bst6I CTCTTC 1 cut(s) 56
BstACI GRCGYC 2 cut(s) 225, 246
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 154
BstDSI CCRYGG 1 cut(s) 17
BstFNI CGCG 1 cut(s) 179
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 4 cut(s) 16, 140, 255, 318
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 4 cut(s) 13, 137, 252, 315
BstMWI GCNNNNNNNGC 2 cut(s) 164, 224
BstSCI CCNGG 1 cut(s) 98
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 1 cut(s) 176
BstV2I GAAGAC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 137
BstYI RGATCY 1 cut(s) 137
BsuI GTATCC 1 cut(s) 114
BtgI CCRYGG 1 cut(s) 17
Cac8I GCNNGC 1 cut(s) 160
CfoI GCGC 1 cut(s) 164
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 201
CseI GACGC 2 cut(s) 233, 235
Csp6I GTAC 1 cut(s) 283
CviAII CATG 1 cut(s) 44
CviJI RGCY 7 cut(s) 26, 37, 89, 158, 167, 187, 212
CviKI_1 RGCY 7 cut(s) 26, 37, 89, 158, 167, 187, 212
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 1 cut(s) 154
DpnI GATC 4 cut(s) 15, 139, 254, 317
DpnII GATC 4 cut(s) 13, 137, 252, 315
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
EciI GGCGGA 1 cut(s) 193
Ecl136II GAGCTC 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 189
Eco32I GATATC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 201
Eco53kI GAGCTC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 181
Eco88I CYCGRG 2 cut(s) 188, 296
EcoICRI GAGCTC 1 cut(s) 187
EcoRV GATATC 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 168
EcoT38I GRGCYC 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 168
Esp3I CGTCTC 1 cut(s) 299
FaeI CATG 1 cut(s) 47
FaiI YATR 2 cut(s) 45, 271
FatI CATG 1 cut(s) 43
Fnu4HI GCNGC 4 cut(s) 90, 165, 228, 231
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 4 cut(s) 90, 165, 228, 231
GlaI GCGC 1 cut(s) 163
GluI GCNGC 4 cut(s) 90, 165, 228, 231
HapII CCGG 3 cut(s) 100, 159, 207
HgaI GACGC 2 cut(s) 233, 235
HhaI GCGC 1 cut(s) 164
Hin1I GRCGYC 2 cut(s) 225, 246
Hin1II CATG 1 cut(s) 47
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HindIII AAGCTT 1 cut(s) 35
HinfI GANTC 2 cut(s) 289, 326
HpaII CCGG 3 cut(s) 100, 159, 207
HphI GGTGA 2 cut(s) 32, 58
Hpy166II GTNNAC 1 cut(s) 285
Hpy188I TCNGA 3 cut(s) 137, 315, 338
Hpy188III TCNNGA 1 cut(s) 250
Hpy8I GTNNAC 1 cut(s) 285
Hpy99I CGWCG 1 cut(s) 120
HpyCH4IV ACGT 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 224
HpyF3I CTNAG 1 cut(s) 154
HpySE526I ACGT 1 cut(s) 115
Hsp92I GRCGYC 2 cut(s) 225, 246
Hsp92II CATG 1 cut(s) 47
HspAI GCGC 1 cut(s) 162
KroI GCCGGC 1 cut(s) 158
KroNI GCCGGC 1 cut(s) 160
Kzo9I GATC 4 cut(s) 13, 137, 252, 315
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 6 cut(s) 42, 113, 172, 184, 220, 263
Lsp1109I GCAGC 1 cut(s) 176
MaeII ACGT 1 cut(s) 115
MaeIII GTNAC 1 cut(s) 119
MalI GATC 4 cut(s) 15, 139, 254, 317
MboI GATC 4 cut(s) 13, 137, 252, 315
MboII GAAGA 3 cut(s) 43, 67, 187
MflI RGATCY 1 cut(s) 137
MhlI GDGCHC 1 cut(s) 189
MlyI GAGTC 1 cut(s) 283
MmeI TCCRAC 2 cut(s) 115, 293
MnlI CCTC 4 cut(s) 80, 223, 251, 316
MroNI GCCGGC 1 cut(s) 158
MseI TTAA 1 cut(s) 279
MspI CCGG 3 cut(s) 100, 159, 207
MspR9I CCNGG 1 cut(s) 100
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 2 cut(s) 164, 224
NaeI GCCGGC 1 cut(s) 160
NciI CCSGG 1 cut(s) 100
NdeII GATC 4 cut(s) 13, 137, 252, 315
NgoMIV GCCGGC 1 cut(s) 158
NlaIII CATG 1 cut(s) 47
NlaIV GGNNCC 3 cut(s) 139, 211, 259
NmeAIII GCCGAG 1 cut(s) 222
NmuCI GTSAC 1 cut(s) 119
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PdiI GCCGGC 1 cut(s) 160
PfeI GAWTC 1 cut(s) 326
PkrI GCNGC 4 cut(s) 91, 166, 229, 232
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
Psp124BI GAGCTC 1 cut(s) 189
PspN4I GGNNCC 3 cut(s) 139, 211, 259
PspPI GGNCC 1 cut(s) 201
PsuI RGATCY 1 cut(s) 137
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SacI GAGCTC 1 cut(s) 189
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 4 cut(s) 90, 165, 228, 231
Sau3AI GATC 4 cut(s) 13, 137, 252, 315
Sau96I GGNCC 1 cut(s) 201
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 1 cut(s) 100
SduI GDGCHC 1 cut(s) 189
SetI ASST 4 cut(s) 39, 118, 189, 203
SinI GGWCC 1 cut(s) 201
SsiI CCGC 6 cut(s) 90, 179, 204, 216, 228, 231
SstI GAGCTC 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 98
StyI CCWWGG 1 cut(s) 168
TaiI ACGT 1 cut(s) 118
TaqI TCGA 2 cut(s) 292, 329
TatI WGTACW 1 cut(s) 282
TauI GCSGC 3 cut(s) 92, 230, 233
TfiI GAWTC 1 cut(s) 326
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 119
TspGWI ACGGA 2 cut(s) 6, 96
VpaK11BI GGWCC 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.