AT1G16020

Vacuolar fusion protein CCZ1 homolog

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
5498012 .. 5501358
3347 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G16020.3

Sequence Viewer

Length: 1548 bp
ATGGCGTCCATGAGCTCTGGTGATGAAAGCCTTCGACTTTGCATGTTTGATTTGAGGAGAGGTCAAACTGAAGGACAAGAGTTAGAGAAAATTTTGTTCTTTTATCCTGCCGATTTAGACTTCTCGACGCAGTTATCAGTGATCGGGCTCAGTGAAGGGCTTATTACTTTTACTAGACTTTTCTCTCCGGAGGCGGCTTGTGAAGTGATCGAAGCAGAAAGACATTCCCATGTTTTCTATGAGGCTGAACCTGATATCTGGATGGTTATGGTTGTGGAGAAAAATAAGGAGACAGGAGCGATATGGAGGATCGATGCATTAAGGAGGGTGCTTAAAGAAGTGCACTCACTCTTTGTGATGTTTCACGGGTCAATTAGGGCATTAATCGAAAAAGAACCAACAGGAGGGCTTACCCGATCACTATTGTACCCGTTCATCACAGATTATTTAAGCACATTTCAAATATGGTCTCTCTCGGAAGACTGCTGCTGTGAATTTTTTGTTGGGAAGAAACTTCAGCTACCAACTTTCCGTGAAACTTTGAGAGAGCGTGGAACTGTTCAAATGCTTACTTTAGCAAGGGATACTGCAGTTGAAGTTCAGTCTCTTGTTCAAGTACTAGATTCATGTGCTGGGAGCTTACGATGTCACTCTATGATCTTATTTCAAGATCTTTTGGTTTCAACAACCCTCTCAGCTGATGATACCGTCGACTTGTTTACATTTGCGGTAATGAGGTTGACCTCAAAAGCTTTATCCTCTGATACGAGTTCTTGGTCATATCTACGTAAAGGGCCTGGTTCATCTGAAATCTCTTCTAGATCTAATCTGGCACCCGTTGGCTCAATTGATTCCCTACACTCAAGAAACGGTAATAACATGCATCATGTTATTAGGCCACTACAAAATGATAAGTGGACAAAAGGGAAAGATGGGTTTCTAATAACCGATATTTGGGGTCTTGAGACTGGCGGCTCCCCTGATTCTGCCATCCCTACAATTTGGCTTCAGCAGACACAAGAAAGAATGTATCTCCTTGCCTATCAGCATAAAAGTCTCACCTTACTTCTTCTGATGCCTACAAATGCCATTGTCAATGGAGATTTAAGCATCTCAGCCGTGAAACAGCAAGTTATTGAAGATGCATCACTGAGAATTTTGAAAATTGAAGAGAATATTTCAAGAGGGTGGGGCGGTGAGAATGCTTACCATATTAAGGGTTACCGTTACTTAGTAGTTGATAATGACACGAAAGTATCCAGATCTTCTCCTTCAGGAAAAGTAACAACACTTGCAAAGGAGTCTCTACTTGCACTAAACAAGCTTAGAGAAGAAGTGGATTCAGAAAAAAGCCGTGCAAAAGGACAGGAGAAAGACATGGAAATATGCATCAGAGCTAAGAACAATGTGTGGGTGATCGCCCGTGTGACCAGAGGCAAAGAGCTTTACATGGCTTTGGAGAAAGGCAGCGACACTCTTCTTGATACCACAGACGCTGTTGGAAGATTCAGCAACAGGTATTGCAGCGGAGCATTCTTGATGGACTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

515

Amino Acids

57.84

Weight (kDa)

5.81

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 832
AccI GTMKAC 1 cut(s) 711
AccIII TCCGGA 1 cut(s) 187
AciI CCGC 5 cut(s) 194, 728, 972, 1194, 1527
AclWI GGATC 1 cut(s) 317
AcsI RAATTY 3 cut(s) 90, 494, 1155
AcuI CTGAAG 4 cut(s) 90, 500, 992, 1257
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 428, 618
AfiI CCNNNNNNNGG 3 cut(s) 404, 954, 1216
AjnI CCWGG 1 cut(s) 796
AjuI GAANNNNNNNTTGG 2 cut(s) 486, 518
AluBI AGCT 8 cut(s) 15, 520, 639, 698, 752, 1324, 1397, 1444
AluI AGCT 8 cut(s) 15, 520, 639, 698, 752, 1324, 1397, 1444
Alw21I GWGCWC 2 cut(s) 17, 345
Alw26I GTCTC 6 cut(s) 284, 474, 609, 959, 1061, 1308
Alw44I GTGCAC 1 cut(s) 341
AlwI GGATC 1 cut(s) 317
AlwNI CAGNNNCTG 1 cut(s) 1496
Aor13HI TCCGGA 1 cut(s) 187
AoxI GGCC 2 cut(s) 794, 896
ApaLI GTGCAC 1 cut(s) 341
ApeKI GCWGC 3 cut(s) 486, 1467, 1524
ApoI RAATTY 3 cut(s) 90, 494, 1155
AseI ATTAAT 1 cut(s) 383
Asp700I GAANNNNTTC 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 794
AsuHPI GGTGA 4 cut(s) 32, 1051, 1208, 1426
BaeGI GKGCMC 1 cut(s) 345
BaeI ACNNNNGTAYC 6 cut(s) 410, 443, 576, 609, 1239, 1272
BanI GGYRCC 1 cut(s) 832
BanII GRGCYC 2 cut(s) 17, 150
BbsI GAAGAC 1 cut(s) 486
Bbv12I GWGCWC 2 cut(s) 17, 345
BbvI GCAGC 3 cut(s) 473, 1479, 1536
BccI CCATC 4 cut(s) 256, 926, 998, 1534
BceAI ACGGC 2 cut(s) 1103, 1338
BciT130I CCWGG 1 cut(s) 798
BciVI GTATCC 2 cut(s) 577, 1267
BcoDI GTCTC 6 cut(s) 284, 474, 609, 959, 1061, 1308
BfaI CTAG 3 cut(s) 174, 620, 819
BfmI CTRYAG 1 cut(s) 588
BfuI GTATCC 2 cut(s) 577, 1267
BglII AGATCT 3 cut(s) 670, 821, 1262
BisI GCNGC 5 cut(s) 195, 487, 973, 1468, 1525
BlsI GCNGC 5 cut(s) 196, 488, 974, 1469, 1526
BmcAI AGTACT 1 cut(s) 618
Bme1390I CCNGG 1 cut(s) 798
BmgT120I GGNCC 1 cut(s) 794
BmiI GGNNCC 2 cut(s) 834, 976
BmrFI CCNGG 1 cut(s) 798
BmsI GCATC 7 cut(s) 304, 892, 1065, 1119, 1132, 1154, 1398
BpiI GAAGAC 1 cut(s) 486
BpuEI CTTGAG 2 cut(s) 847, 983
Bsa29I ATCGAT 1 cut(s) 312
BsaAI YACGTR 1 cut(s) 788
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 474
BsaWI WCCGGW 1 cut(s) 187
Bsc4I CCNNNNNNNGG 3 cut(s) 404, 954, 1216
Bse1I ACTGG 1 cut(s) 973
BseAI TCCGGA 1 cut(s) 187
BseBI CCWGG 1 cut(s) 798
BseCI ATCGAT 1 cut(s) 312
BseGI GGATG 2 cut(s) 267, 990
BseLI CCNNNNNNNGG 3 cut(s) 404, 954, 1216
BseMII CTCAG 4 cut(s) 163, 708, 1128, 1142
BseNI ACTGG 1 cut(s) 973
BseRI GAGGAG 1 cut(s) 70
BseSI GKGCMC 1 cut(s) 345
BseXI GCAGC 3 cut(s) 473, 1479, 1536
BseYI CCCAGC 1 cut(s) 632
BshFI GGCC 2 cut(s) 796, 898
BshNI GGYRCC 1 cut(s) 832
BshVI ATCGAT 1 cut(s) 312
BsiHKAI GWGCWC 2 cut(s) 17, 345
BsiSI CCGG 1 cut(s) 188
BslI CCNNNNNNNGG 3 cut(s) 404, 954, 1216
BsmAI GTCTC 6 cut(s) 284, 474, 609, 959, 1061, 1308
BsmI GAATGC 2 cut(s) 1207, 1532
BsnI GGCC 2 cut(s) 796, 898
Bso31I GGTCTC 1 cut(s) 474
Bsp1286I GDGCHC 3 cut(s) 17, 150, 345
Bsp13I TCCGGA 1 cut(s) 187
Bsp143I GATC 9 cut(s) 141, 207, 309, 416, 657, 670, 821, 1262, 1416
BspACI CCGC 5 cut(s) 194, 728, 972, 1194, 1527
BspANI GGCC 2 cut(s) 796, 898
BspCNI CTCAG 4 cut(s) 162, 707, 1127, 1143
BspDI ATCGAT 1 cut(s) 312
BspEI TCCGGA 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 834, 976
BspMAI CTGCAG 1 cut(s) 592
BspPI GGATC 1 cut(s) 317
BspT107I GGYRCC 1 cut(s) 832
BspTNI GGTCTC 1 cut(s) 474
BsrI ACTGG 1 cut(s) 973
BssMI GATC 9 cut(s) 141, 207, 309, 416, 657, 670, 821, 1262, 1416
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 798
Bst4CI ACNGT 4 cut(s) 559, 709, 872, 1226
Bst6I CTCTTC 3 cut(s) 820, 1164, 1482
BstACI GRCGYC 1 cut(s) 5
BstBAI YACGTR 1 cut(s) 788
BstDEI CTNAG 7 cut(s) 149, 694, 1114, 1151, 1231, 1325, 1398
BstEII GGTNACC 1 cut(s) 1220
BstF5I GGATG 2 cut(s) 267, 990
BstKTI GATC 9 cut(s) 144, 210, 312, 419, 660, 673, 824, 1265, 1419
BstMAI GTCTC 6 cut(s) 284, 474, 609, 959, 1061, 1308
BstMBI GATC 9 cut(s) 141, 207, 309, 416, 657, 670, 821, 1262, 1416
BstNI CCWGG 1 cut(s) 798
BstNSI RCATGY 2 cut(s) 46, 883
BstPI GGTNACC 1 cut(s) 1220
BstSCI CCNGG 1 cut(s) 796
BstSFI CTRYAG 1 cut(s) 588
BstSLI GKGCMC 1 cut(s) 345
BstSNI TACGTA 1 cut(s) 788
BstV1I GCAGC 3 cut(s) 473, 1479, 1536
BstV2I GAAGAC 1 cut(s) 486
BstX2I RGATCY 3 cut(s) 670, 821, 1262
BstYI RGATCY 3 cut(s) 670, 821, 1262
Bsu15I ATCGAT 1 cut(s) 312
BsuI GTATCC 2 cut(s) 577, 1267
BsuRI GGCC 2 cut(s) 796, 898
BsuTUI ATCGAT 1 cut(s) 312
BtsCI GGATG 2 cut(s) 267, 990
BtsIMutI CAGTG 3 cut(s) 144, 157, 1148
CaiI CAGNNNCTG 1 cut(s) 1496
Cfr13I GGNCC 1 cut(s) 794
ClaI ATCGAT 1 cut(s) 312
CseI GACGC 2 cut(s) 136, 1502
Csp6I GTAC 2 cut(s) 427, 617
CviAII CATG 8 cut(s) 10, 43, 230, 627, 880, 887, 1378, 1450
CviQI GTAC 2 cut(s) 427, 617
DdeI CTNAG 7 cut(s) 149, 694, 1114, 1151, 1231, 1325, 1398
DpnI GATC 9 cut(s) 143, 209, 311, 418, 659, 672, 823, 1264, 1418
DpnII GATC 9 cut(s) 141, 207, 309, 416, 657, 670, 821, 1262, 1416
Eam1104I CTCTTC 3 cut(s) 820, 1164, 1482
EarI CTCTTC 3 cut(s) 820, 1164, 1482
Ecl136II GAGCTC 1 cut(s) 15
Eco105I TACGTA 1 cut(s) 788
Eco24I GRGCYC 2 cut(s) 17, 150
Eco31I GGTCTC 1 cut(s) 474
Eco32I GATATC 1 cut(s) 256
Eco53kI GAGCTC 1 cut(s) 15
Eco57I CTGAAG 4 cut(s) 90, 500, 992, 1257
Eco91I GGTNACC 1 cut(s) 1220
EcoICRI GAGCTC 1 cut(s) 15
EcoO109I RGGNCCY 1 cut(s) 794
EcoO65I GGTNACC 1 cut(s) 1220
EcoRII CCWGG 1 cut(s) 796
EcoRV GATATC 1 cut(s) 256
EcoT22I ATGCAT 4 cut(s) 319, 885, 1147, 1391
EcoT38I GRGCYC 2 cut(s) 17, 150
FaeI CATG 8 cut(s) 13, 46, 233, 630, 883, 890, 1381, 1453
FatI CATG 8 cut(s) 9, 42, 229, 626, 879, 886, 1377, 1449
FblI GTMKAC 1 cut(s) 711
Fnu4HI GCNGC 5 cut(s) 195, 487, 973, 1468, 1525
FokI GGATG 2 cut(s) 274, 977
FriOI GRGCYC 2 cut(s) 17, 150
Fsp4HI GCNGC 5 cut(s) 195, 487, 973, 1468, 1525
FspBI CTAG 3 cut(s) 174, 620, 819
GluI GCNGC 5 cut(s) 195, 487, 973, 1468, 1525
GsaI CCCAGC 1 cut(s) 636
HaeIII GGCC 2 cut(s) 796, 898
HapII CCGG 1 cut(s) 188
HgaI GACGC 2 cut(s) 136, 1502
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 8 cut(s) 13, 46, 233, 630, 883, 890, 1381, 1453
HincII GTYRAC 2 cut(s) 712, 741
HindII GTYRAC 2 cut(s) 712, 741
HindIII AAGCTT 2 cut(s) 750, 1322
HinfI GANTC 6 cut(s) 623, 851, 983, 1301, 1340, 1506
HpaII CCGG 1 cut(s) 188
HphI GGTGA 4 cut(s) 32, 1051, 1208, 1426
Hpy166II GTNNAC 5 cut(s) 343, 712, 720, 741, 918
Hpy188I TCNGA 6 cut(s) 478, 763, 808, 1074, 1345, 1394
Hpy8I GTNNAC 5 cut(s) 343, 712, 720, 741, 918
Hpy99I CGWCG 2 cut(s) 130, 713
HpyAV CCTTC 4 cut(s) 41, 65, 149, 1281
HpyCH4III ACNGT 4 cut(s) 559, 709, 872, 1226
HpyCH4IV ACGT 1 cut(s) 787
HpyF3I CTNAG 7 cut(s) 149, 694, 1114, 1151, 1231, 1325, 1398
HpySE526I ACGT 1 cut(s) 787
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 8 cut(s) 13, 46, 233, 630, 883, 890, 1381, 1453
Kpn2I TCCGGA 1 cut(s) 187
Kzo9I GATC 9 cut(s) 141, 207, 309, 416, 657, 670, 821, 1262, 1416
LmnI GCTCC 4 cut(s) 296, 636, 980, 1529
Lsp1109I GCAGC 3 cut(s) 473, 1479, 1536
LweI GCATC 7 cut(s) 304, 892, 1065, 1119, 1132, 1154, 1398
MaeI CTAG 3 cut(s) 174, 620, 819
MaeII ACGT 1 cut(s) 787
MaeIII GTNAC 5 cut(s) 647, 1220, 1226, 1282, 1426
MalI GATC 9 cut(s) 143, 209, 311, 418, 659, 672, 823, 1264, 1418
MboI GATC 9 cut(s) 141, 207, 309, 416, 657, 670, 821, 1262, 1416
MfeI CAATTG 1 cut(s) 846
MflI RGATCY 3 cut(s) 670, 821, 1262
MhlI GDGCHC 3 cut(s) 17, 150, 345
MluCI AATT 7 cut(s) 90, 372, 494, 846, 999, 1155, 1164
MlyI GAGTC 1 cut(s) 1310
MmeI TCCRAC 1 cut(s) 1480
Mph1103I ATGCAT 4 cut(s) 319, 885, 1147, 1391
MroI TCCGGA 1 cut(s) 187
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 6 cut(s) 320, 333, 383, 449, 1106, 1215
MslI CAYNNNNRTG 1 cut(s) 228
MspA1I CMGCKG 2 cut(s) 698, 1527
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 798
MunI CAATTG 1 cut(s) 846
Mva1269I GAATGC 2 cut(s) 1207, 1532
MvaI CCWGG 1 cut(s) 798
NdeII GATC 9 cut(s) 141, 207, 309, 416, 657, 670, 821, 1262, 1416
NlaIII CATG 8 cut(s) 13, 46, 233, 630, 883, 890, 1381, 1453
NlaIV GGNNCC 2 cut(s) 834, 976
NmuCI GTSAC 2 cut(s) 647, 1426
NsiI ATGCAT 4 cut(s) 319, 885, 1147, 1391
NspI RCATGY 2 cut(s) 46, 883
PctI GAATGC 2 cut(s) 1207, 1532
PdmI GAANNNNTTC 1 cut(s) 30
PfeI GAWTC 5 cut(s) 623, 851, 983, 1340, 1506
PkrI GCNGC 5 cut(s) 196, 488, 974, 1469, 1526
PleI GAGTC 1 cut(s) 1309
PpsI GAGTC 1 cut(s) 1309
Ppu21I YACGTR 1 cut(s) 788
PshBI ATTAAT 1 cut(s) 383
Psp124BI GAGCTC 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 796
PspEI GGTNACC 1 cut(s) 1220
PspFI CCCAGC 1 cut(s) 632
PspGI CCWGG 1 cut(s) 796
PspN4I GGNNCC 2 cut(s) 834, 976
PspPI GGNCC 1 cut(s) 794
PstI CTGCAG 1 cut(s) 592
PstNI CAGNNNCTG 1 cut(s) 1496
PsuI RGATCY 3 cut(s) 670, 821, 1262
PvuII CAGCTG 1 cut(s) 698
RsaI GTAC 2 cut(s) 428, 618
RsaNI GTAC 2 cut(s) 427, 617
RseI CAYNNNNRTG 1 cut(s) 228
SacI GAGCTC 1 cut(s) 17
SalI GTCGAC 1 cut(s) 710
SaqAI TTAA 6 cut(s) 320, 333, 383, 449, 1106, 1215
SatI GCNGC 5 cut(s) 195, 487, 973, 1468, 1525
Sau3AI GATC 9 cut(s) 141, 207, 309, 416, 657, 670, 821, 1262, 1416
Sau96I GGNCC 1 cut(s) 794
ScaI AGTACT 1 cut(s) 618
SchI GAGTC 1 cut(s) 1310
ScrFI CCNGG 1 cut(s) 798
SduI GDGCHC 3 cut(s) 17, 150, 345
SfaNI GCATC 7 cut(s) 304, 892, 1065, 1119, 1132, 1154, 1398
SfcI CTRYAG 1 cut(s) 588
SmiMI CAYNNNNRTG 1 cut(s) 228
SmlI CTYRAG 2 cut(s) 862, 962
SmoI CTYRAG 2 cut(s) 862, 962
SnaBI TACGTA 1 cut(s) 788
Sse9I AATT 7 cut(s) 90, 372, 494, 846, 999, 1155, 1164
SsiI CCGC 5 cut(s) 194, 728, 972, 1194, 1527
SspI AATATT 1 cut(s) 1177
SspMI CTAG 3 cut(s) 174, 620, 819
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 1 cut(s) 796
TaaI ACNGT 4 cut(s) 559, 709, 872, 1226
TaiI ACGT 1 cut(s) 790
TaqI TCGA 6 cut(s) 34, 125, 210, 312, 387, 711
TasI AATT 7 cut(s) 90, 372, 494, 846, 999, 1155, 1164
TatI WGTACW 1 cut(s) 616
TauI GCSGC 2 cut(s) 197, 975
TfiI GAWTC 5 cut(s) 623, 851, 983, 1340, 1506
Tru1I TTAA 6 cut(s) 320, 333, 383, 449, 1106, 1215
Tru9I TTAA 6 cut(s) 320, 333, 383, 449, 1106, 1215
TscAI CASTG 3 cut(s) 144, 157, 1155
TseFI GTSAC 2 cut(s) 647, 1426
TseI GCWGC 3 cut(s) 486, 1467, 1524
Tsp45I GTSAC 2 cut(s) 647, 1426
TspDTI ATGAA 4 cut(s) 39, 424, 615, 792
TspGWI ACGGA 1 cut(s) 521
TspRI CASTG 3 cut(s) 144, 157, 1155
VneI GTGCAC 1 cut(s) 341
VspI ATTAAT 1 cut(s) 383
XapI RAATTY 3 cut(s) 90, 494, 1155
XbaI TCTAGA 1 cut(s) 818
XceI RCATGY 2 cut(s) 46, 883
XmiI GTMKAC 1 cut(s) 711
XmnI GAANNNNTTC 1 cut(s) 30
XspI CTAG 3 cut(s) 174, 620, 819
ZrmI AGTACT 1 cut(s) 618
Zsp2I ATGCAT 4 cut(s) 319, 885, 1147, 1391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.