Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0005810

Physical Location & Seq

Genomic Coordinates Forward (+)

69884660 .. 69891619

Gene Structure 6960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG392800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGCCGCAGTTGCTGAATCTCATATGTATAGTTTTGCTCTCTGAGGCAGATTTTCTTGTTGGGAAGAAGCTACTGATGCCATCATTCCGTGACTCTTTAAAGGAGCGTGGAACTGTGCAGATGCTTACTGTAGGGCGGGAAGCCGCAATTGAAGTTCAGTCACTTGTCAGGGTACTTGAATCTAGTGCTGGGAACTTGCCCTGTCATTCACTAATCTTGTTTCAGGACCTGTTGGTATCCACAACACTTTCTCCTGATGACACCGTAAACCTATTTGCATATGCTGTTTTAAGGTTGACACCCCATGTTTTGTCCTCTGGAGCAAGTTCCTGGTCTTATTTACGCAAAGGAGCTACAGCTAACGTTTCCTCAAGTTCTATCTTGTCCGATTCTGGTACTGTTCCTGAGCAGTATCATGGCTCACACAACAATTCTTCTGCTGGAGACAACAGTTCTCGCGTCATACGGCCATTGAAGCTGGACAAGTGGTCCAAAGGGAACGATGGTTTTCTTGCCACTGATATTTGGGGTGCAGAGCCTAGTACCGGGGTGTCGGCCACTCCAACAGTATTTCTCCATCAGTCAGAGGAAAGGATGTATCTGTGTGCCCATCAGCATAAAAGCCTCACCTTACTTTTTCTCATTCCTGTTTCTTCAGTACTGAATGGGGAGCAAGGTCTTTCTACAGTGAAGCAGCAAGTTCTTGAGAATGTATCCCTAAAGCTGTTGAAAGTAGAAGAAAAACTATCAAAAGGATGGGGCGGTGAGAACGCATATCATGTTAGTGGATATCGGTATTTACTAGTGGATGGAGACAGAAACGTATCCAGGGCTTCTCCAACAGGAAAGGTCACAACGCTTAGTAAGGAGTCCTTACTTGCCTTAAGTAAGCTTAGAGAAGAAGTTGATAGAGAAAAGAGTAGAGCACAGTGGGATAGCCCCGGTCATGAAAAAGAGTTGGAAGTTAGCATCAGGGCAAAAAACAATGCTTGGGTTATTGCTCGGGTAACAAGAGGGAAGGAGCTTTACATGGTTCTGGAAAAAGCCAATGAAACACTTCTTTACGCCTCCGATGCTGTTGAAAAGTTCAGCAACAGGTACTGCATATTCCTTTTTGAAGTTGCAAGTAGCGTTTGCAATAGTTGTCGTGATCGTCACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0008150 GO:0016192 GO:0031982 GO:0043226 GO:0043227 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1712

Protein Analysis

387

Amino Acids

42.75

Weight (kDa)

7.65

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16020 AT1G16020 AT1G16020 AT1G16020 AT1G80910
fragaria_vesca	FvH4_4g33280
malus_domestica	MD13G1018100.v1.1 MD16G1016000.v1.1
prunus_persica	Prupe.7G053000_v2.0.a1 Prupe.7G053000_v2.0.a1 Prupe.7G053000_v2.0.a1 Prupe.7G053000_v2.0.a1 Prupe.7G053000_v2.0.a1 Prupe.7G053000_v2.0.a1 Prupe.7G053000_v2.0.a1 Prupe.7G053000_v2.0.a1
pyrus_communis	pycom13g01550 pycom16g01490
rosa_chinensis	RchiOBHm_Chr4g0442431
rosa_laevigata	RLG00000006010
rosa_multiflora	Rmu_ssc0000204.1_g000060
rosa_roxburghii	Rroxscaffold_5G00383280
rosa_rugosa	Rorug04G0341000
rosa_samantha	Rh4AG392800 Rh4BG406400 Rh4CG421600 Rh4DG399600
rosa_wichuraiana	Rw4G033930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	459
AciI	CCGC	4 cut(s)	5, 136, 144, 762
AclI	AACGTT	1 cut(s)	363
AcoI	YGGCCR	2 cut(s)	467, 555
AcuI	CTGAAG	1 cut(s)	639
AfaI	GTAC	5 cut(s)	174, 397, 544, 660, 1100
AfiI	CCNNNNNNNGG	1 cut(s)	545
AflII	CTTAAG	1 cut(s)	883
AgsI	TTSAA	6 cut(s)	152, 179, 475, 730, 1082, 1118
AhdI	GACNNNNNGTC	1 cut(s)	487
AhlI	ACTAGT	1 cut(s)	802
AjnI	CCWGG	2 cut(s)	329, 827
AluBI	AGCT	7 cut(s)	70, 353, 359, 478, 724, 892, 1024
AluI	AGCT	7 cut(s)	70, 353, 359, 478, 724, 892, 1024
Alw21I	GWGCWC	1 cut(s)	928
Alw26I	GTCTC	2 cut(s)	438, 807
AlwNI	CAGNNNCTG	3 cut(s)	13, 229, 1101
Ama87I	CYCGRG	1 cut(s)	1002
AoxI	GGCC	2 cut(s)	467, 555
ApeKI	GCWGC	1 cut(s)	694
Asp700I	GAANNNNTTC	1 cut(s)	1056
AspS9I	GGNCC	2 cut(s)	226, 489
AsuC2I	CCSGG	2 cut(s)	547, 942
AsuHPI	GGTGA	2 cut(s)	619, 776
AvaI	CYCGRG	1 cut(s)	1002
AvaII	GGWCC	2 cut(s)	226, 489
BaeGI	GKGCMC	1 cut(s)	610
BarI	GAAGNNNNNNTAC	2 cut(s)	1010, 1042
Bbv12I	GWGCWC	1 cut(s)	928
BbvI	GCAGC	1 cut(s)	706
BccI	CCATC	6 cut(s)	88, 497, 585, 618, 750, 803
BceAI	ACGGC	1 cut(s)	482
BciT130I	CCWGG	2 cut(s)	331, 829
BciVI	GTATCC	3 cut(s)	247, 724, 835
BcnI	CCSGG	2 cut(s)	547, 942
BcoDI	GTCTC	2 cut(s)	438, 807
BcuI	ACTAGT	1 cut(s)	802
BfaI	CTAG	3 cut(s)	183, 540, 803
BfmI	CTRYAG	3 cut(s)	129, 354, 684
BfrI	CTTAAG	1 cut(s)	883
BfuI	GTATCC	3 cut(s)	247, 724, 835
BisI	GCNGC	3 cut(s)	5, 144, 695
BlsI	GCNGC	3 cut(s)	6, 145, 696
BmcAI	AGTACT	1 cut(s)	660
Bme1390I	CCNGG	4 cut(s)	331, 547, 829, 942
Bme18I	GGWCC	2 cut(s)	226, 489
BmeRI	GACNNNNNGTC	1 cut(s)	487
BmeT110I	CYCGRG	1 cut(s)	1002
BmgT120I	GGNCC	2 cut(s)	226, 489
BmrFI	CCNGG	4 cut(s)	331, 547, 829, 942
BmsI	GCATC	4 cut(s)	66, 111, 978, 1063
BpmI	CTGGAG	2 cut(s)	339, 462
Bpu10I	CCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	2 cut(s)	355, 725
BpuMI	CCSGG	2 cut(s)	547, 942
BsaJI	CCNNGG	3 cut(s)	546, 828, 940
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	545
BseBI	CCWGG	2 cut(s)	331, 829
BseDI	CCNNGG	3 cut(s)	546, 828, 940
BseGI	GGATG	3 cut(s)	600, 761, 814
BseLI	CCNNNNNNNGG	1 cut(s)	545
BseMII	CTCAG	2 cut(s)	33, 396
BseSI	GKGCMC	1 cut(s)	610
BseXI	GCAGC	1 cut(s)	706
BseYI	CCCAGC	1 cut(s)	188
BsgI	GTGCAG	2 cut(s)	137, 552
Bsh1236I	CGCG	1 cut(s)	459
BshFI	GGCC	2 cut(s)	469, 557
BsiHKAI	GWGCWC	1 cut(s)	928
BsiHKCI	CYCGRG	1 cut(s)	1002
BsiSI	CCGG	2 cut(s)	546, 942
BslI	CCNNNNNNNGG	1 cut(s)	545
BsmAI	GTCTC	2 cut(s)	438, 807
BsnI	GGCC	2 cut(s)	469, 557
BsoBI	CYCGRG	1 cut(s)	1002
Bsp1286I	GDGCHC	2 cut(s)	610, 928
Bsp143I	GATC	1 cut(s)	1150
BspACI	CCGC	4 cut(s)	5, 136, 144, 762
BspANI	GGCC	2 cut(s)	469, 557
BspCNI	CTCAG	2 cut(s)	34, 397
BspFNI	CGCG	1 cut(s)	459
BspHI	TCATGA	1 cut(s)	946
BspTI	CTTAAG	1 cut(s)	883
BssECI	CCNNGG	3 cut(s)	546, 828, 940
BssMI	GATC	1 cut(s)	1150
Bst2UI	CCWGG	2 cut(s)	331, 829
Bst4CI	ACNGT	8 cut(s)	115, 130, 265, 400, 452, 568, 688, 930
BstAFI	CTTAAG	1 cut(s)	883
BstDEI	CTNAG	4 cut(s)	42, 405, 860, 893
BstF5I	GGATG	3 cut(s)	600, 761, 814
BstFNI	CGCG	1 cut(s)	459
BstKTI	GATC	1 cut(s)	1153
BstMAI	GTCTC	2 cut(s)	438, 807
BstMBI	GATC	1 cut(s)	1150
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 76, 475, 1073
BstNI	CCWGG	2 cut(s)	331, 829
BstSCI	CCNGG	4 cut(s)	329, 545, 827, 940
BstSFI	CTRYAG	3 cut(s)	129, 354, 684
BstSLI	GKGCMC	1 cut(s)	610
BstUI	CGCG	1 cut(s)	459
BstV1I	GCAGC	1 cut(s)	706
BsuI	GTATCC	3 cut(s)	247, 724, 835
BsuRI	GGCC	2 cut(s)	469, 557
BtsCI	GGATG	3 cut(s)	600, 761, 814
BtsIMutI	CAGTG	3 cut(s)	516, 693, 935
CaiI	CAGNNNCTG	3 cut(s)	13, 229, 1101
CciI	TCATGA	1 cut(s)	946
Cfr13I	GGNCC	2 cut(s)	226, 489
CseI	GACGC	1 cut(s)	448
Csp6I	GTAC	5 cut(s)	173, 396, 543, 659, 1099
CviAII	CATG	5 cut(s)	305, 416, 779, 947, 1030
CviQI	GTAC	5 cut(s)	173, 396, 543, 659, 1099
DdeI	CTNAG	4 cut(s)	42, 405, 860, 893
DpnI	GATC	1 cut(s)	1152
DpnII	GATC	1 cut(s)	1150
DraI	TTTAAA	1 cut(s)	99
DriI	GACNNNNNGTC	1 cut(s)	487
EaeI	YGGCCR	2 cut(s)	467, 555
Eam1105I	GACNNNNNGTC	1 cut(s)	487
Eco32I	GATATC	1 cut(s)	791
Eco47I	GGWCC	2 cut(s)	226, 489
Eco57I	CTGAAG	1 cut(s)	639
Eco88I	CYCGRG	1 cut(s)	1002
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	2 cut(s)	329, 827
EcoRV	GATATC	1 cut(s)	791
FaeI	CATG	5 cut(s)	308, 419, 782, 950, 1033
FalI	AAGNNNNNCTT	2 cut(s)	857, 889
FatI	CATG	5 cut(s)	304, 415, 778, 946, 1029
FauI	CCCGC	1 cut(s)	129
FauNDI	CATATG	2 cut(s)	23, 280
Fnu4HI	GCNGC	3 cut(s)	5, 144, 695
FokI	GGATG	3 cut(s)	607, 768, 821
Fsp4HI	GCNGC	3 cut(s)	5, 144, 695
FspBI	CTAG	3 cut(s)	183, 540, 803
GluI	GCNGC	3 cut(s)	5, 144, 695
GsaI	CCCAGC	1 cut(s)	192
GsuI	CTGGAG	2 cut(s)	339, 462
HaeIII	GGCC	2 cut(s)	469, 557
HapII	CCGG	2 cut(s)	546, 942
HgaI	GACGC	1 cut(s)	448
Hin1II	CATG	5 cut(s)	308, 419, 782, 950, 1033
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HindIII	AAGCTT	1 cut(s)	890
HinfI	GANTC	5 cut(s)	16, 92, 179, 389, 869
HpaII	CCGG	2 cut(s)	546, 942
HphI	GGTGA	2 cut(s)	619, 776
Hpy166II	GTNNAC	2 cut(s)	268, 297
Hpy188I	TCNGA	4 cut(s)	43, 388, 586, 1072
Hpy188III	TCNNGA	8 cut(s)	224, 254, 318, 404, 704, 947, 1037, 1148
Hpy8I	GTNNAC	2 cut(s)	268, 297
HpyAV	CCTTC	1 cut(s)	1012
HpyCH4III	ACNGT	8 cut(s)	115, 130, 265, 400, 452, 568, 688, 930
HpyCH4IV	ACGT	2 cut(s)	363, 822
HpyCH4V	TGCA	6 cut(s)	118, 278, 533, 1104, 1124, 1137
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 76, 475, 1073
HpyF3I	CTNAG	4 cut(s)	42, 405, 860, 893
HpySE526I	ACGT	2 cut(s)	363, 822
Hsp92II	CATG	5 cut(s)	308, 419, 782, 950, 1033
Kzo9I	GATC	1 cut(s)	1150
LmnI	GCTCC	5 cut(s)	103, 320, 350, 670, 1021
Lsp1109I	GCAGC	1 cut(s)	706
LweI	GCATC	4 cut(s)	66, 111, 978, 1063
MaeI	CTAG	3 cut(s)	183, 540, 803
MaeII	ACGT	2 cut(s)	363, 822
MaeIII	GTNAC	5 cut(s)	89, 159, 850, 1006, 1154
MalI	GATC	1 cut(s)	1152
MboI	GATC	1 cut(s)	1150
MboII	GAAGA	5 cut(s)	76, 426, 645, 749, 911
MfeI	CAATTG	1 cut(s)	147
MhlI	GDGCHC	2 cut(s)	610, 928
MluCI	AATT	2 cut(s)	147, 430
MlyI	GAGTC	2 cut(s)	86, 878
MmeI	TCCRAC	3 cut(s)	587, 863, 939
MnlI	CCTC	7 cut(s)	37, 325, 379, 580, 635, 1007, 1078
MroXI	GAANNNNTTC	1 cut(s)	1056
MseI	TTAA	4 cut(s)	98, 290, 884, 1162
MslI	CAYNNNNRTG	1 cut(s)	783
MspCI	CTTAAG	1 cut(s)	883
MspI	CCGG	2 cut(s)	546, 942
MspR9I	CCNGG	4 cut(s)	331, 547, 829, 942
MunI	CAATTG	1 cut(s)	147
MvaI	CCWGG	2 cut(s)	331, 829
MvnI	CGCG	1 cut(s)	459
MwoI	GCNNNNNNNGC	4 cut(s)	10, 76, 475, 1073
NciI	CCSGG	2 cut(s)	547, 942
NdeI	CATATG	2 cut(s)	23, 280
NdeII	GATC	1 cut(s)	1150
NlaIII	CATG	5 cut(s)	308, 419, 782, 950, 1033
NmuCI	GTSAC	4 cut(s)	89, 159, 850, 1154
PagI	TCATGA	1 cut(s)	946
PdmI	GAANNNNTTC	1 cut(s)	1056
PfeI	GAWTC	3 cut(s)	16, 179, 389
PkrI	GCNGC	3 cut(s)	6, 145, 696
PleI	GAGTC	2 cut(s)	86, 877
PpsI	GAGTC	2 cut(s)	86, 877
PpuMI	RGGWCCY	1 cut(s)	226
Psp1406I	AACGTT	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	2 cut(s)	329, 827
PspFI	CCCAGC	1 cut(s)	188
PspGI	CCWGG	2 cut(s)	329, 827
PspPI	GGNCC	2 cut(s)	226, 489
PspPPI	RGGWCCY	1 cut(s)	226
PstNI	CAGNNNCTG	3 cut(s)	13, 229, 1101
RsaI	GTAC	5 cut(s)	174, 397, 544, 660, 1100
RsaNI	GTAC	5 cut(s)	173, 396, 543, 659, 1099
RseI	CAYNNNNRTG	1 cut(s)	783
SaqAI	TTAA	4 cut(s)	98, 290, 884, 1162
SatI	GCNGC	3 cut(s)	5, 144, 695
Sau3AI	GATC	1 cut(s)	1150
Sau96I	GGNCC	2 cut(s)	226, 489
ScaI	AGTACT	1 cut(s)	660
SchI	GAGTC	2 cut(s)	86, 878
ScrFI	CCNGG	4 cut(s)	331, 547, 829, 942
SduI	GDGCHC	2 cut(s)	610, 928
SfaNI	GCATC	4 cut(s)	66, 111, 978, 1063
SfcI	CTRYAG	3 cut(s)	129, 354, 684
SinI	GGWCC	2 cut(s)	226, 489
SmiMI	CAYNNNNRTG	1 cut(s)	783
SmlI	CTYRAG	3 cut(s)	370, 704, 883
SmoI	CTYRAG	3 cut(s)	370, 704, 883
SpeI	ACTAGT	1 cut(s)	802
Sse9I	AATT	2 cut(s)	147, 430
SsiI	CCGC	4 cut(s)	5, 136, 144, 762
SspMI	CTAG	3 cut(s)	183, 540, 803
StyD4I	CCNGG	4 cut(s)	329, 545, 827, 940
TaaI	ACNGT	8 cut(s)	115, 130, 265, 400, 452, 568, 688, 930
TaiI	ACGT	2 cut(s)	366, 825
TasI	AATT	2 cut(s)	147, 430
TatI	WGTACW	1 cut(s)	658
TauI	GCSGC	2 cut(s)	7, 146
TfiI	GAWTC	3 cut(s)	16, 179, 389
Tru1I	TTAA	4 cut(s)	98, 290, 884, 1162
Tru9I	TTAA	4 cut(s)	98, 290, 884, 1162
TscAI	CASTG	3 cut(s)	523, 693, 935
TseFI	GTSAC	4 cut(s)	89, 159, 850, 1154
TseI	GCWGC	1 cut(s)	694
Tsp45I	GTSAC	4 cut(s)	89, 159, 850, 1154
TspDTI	ATGAA	2 cut(s)	963, 1065
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	3 cut(s)	523, 693, 935
Vha464I	CTTAAG	1 cut(s)	883
VpaK11BI	GGWCC	2 cut(s)	226, 489
XmnI	GAANNNNTTC	1 cut(s)	1056
XspI	CTAG	3 cut(s)	183, 540, 803
ZrmI	AGTACT	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.