AT1G16330

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
5582387 .. 5587461
5075 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G16330.1

Sequence Viewer

Length: 1947 bp
ATGGCGTTCGCGAAGGCACCACGACTAAGTAGAGATGATATTCTTGGAAATCGAGTGAGTACTAGGAGTTTCAAAATCTTCTCCGATAATCAGAAAACTGATCCAGCCAGTACAATAGGTACTTCACAGAAGAAGACTCGTATTCCTTTGAGGAGAAAGTCTGTAACAATTAGCAATGGTTTAGGAGCAACTTCTAACACAAACAATATGAAGAAGGAAAATTCGAGAATCACAGGAAAGGGCAAAAGCAGTATTGAAAACTGGGAGGAATACACTAAAGTCACAAGAAAAGCTTTGGCTGATTTAAGTAATCTTGGTGGGAACACTCTAAGGATTCCAACGCTTTGTGGCAGCAGTACCATGAAATGGAAAGGTGTAAAAATGGCAAATCCGAAAAGGGTCTCAGTTGGTCCAACCAGAGCTAATAATATCTCAGTGAAAAAGTCTACTAAGGAGAATGTGAGTAAAAGAACCACCGAACTTGGGAACAATAACCTTTACAAGACAGGTCAGAAATTCATCAAAAACAAAACCTTGAGCCTTGGATCAACGGCTGGTGGAACAAGAAAGTCCTTACCAACTTTAAAGAGAACAAGCCTCACAGATAAGAGCTTAAAAAAGTTCAATGTCTCAGGCTTAAATTCGAAACAATTGGGTCAGGGTCTAGCCAGTAAAGCCAGCAACCAAGCTGTCCCGCAGCTAAGCAGTGCCGGAACCTATACTTGGAAAACTCGAACAAGTGTCGGCTCTATACAATCGGACGGCAATAAGCAGAGTAAGAATAACGTCCGTTTCGTAAGGAAATCTATCAAGATCCAGACAACTGTAAAGACTTCGCTACAAAACCGTAGCTCTCTTAAGAAGCCCCCAGTGGGTAGAAGTAAATCAAGATCTATTTCTTCAATCCCTTCTTCTGCAGTTGCCTCAACACTGTCACTTCCGGAAAAGGTTGAGACAAAATGTCTTGAAGAAGACACTCAAGGAGAGAGTTCATCTAGTGGAAACAAAGACCCAACAACAAAAGTGTTGGATGTTACAGCGAAGCCAAAATCAAAACGTAGAAAGTCTTTCACATCTCTACTAGTGAATGGATCAAAGTTCGATGAGAAAAATGGTGAAACCACAGAGCCAGAAAAACTTCCAAGCATTGATGATGAATCCAATCAGCTGGAAGTTGCAGAATATGTGGATGACATATATCAGTTCTATTGGACTGCAGAAGCATTAAATCCAGCTTTGGGACATTACTTGTCAGCTCATGCAGAAGTCAGTCCAGTTACGCGTGGAATTTTGATCAACTGGCTTATCGAAGTTCATTTCAAATTTGATCTAATGCATGAGACTCTTTACCTGACAATGGACTTATTAGACCGTTACCTCTCCCAAGTTCCAATACATAAAAATGAGATGCAATTGATAGGTCTTACTGCACTCTTATTGGCATCTAAATATGAGGACTACTGGCATCCTAGGATCAAAGACTTGATCAGCATATCCGCAGAATCATACACCAGAGAACAAATCTTGGGAATGGAGAGAAGTATGCTTAAACAGTTAAAGTTCCGTTTGAATGCACCCACCCCCTATGTTTTCATGTTGAGGTTCCTAAAAGCTGCTCAATCCAATAAGAAGCTTGAACAACTCGCCTTCTACCTTATCGAGTTGTGTTTGGTTGAGTACGAAGCTTTGAAGTATAAGCCATCACTGCTATGTGCATCAGCCATTTATGTTGCCAGATGCACTTTGCATATGACTCCAGTTTGGACCTCGCTCCTAAACAACCATACCCACTACAATGTCTCCCAGATGAAGGACTGTTCTGACATGATCTTAAGGTTTCACAAAGCTGCTAAAACAGGAAACCTGAGGGTCACTTATGAGAAGTACATAAATCCAGATCGCAGTAACGTCGCAGTCTTGAAGCCCTTAGATAAACTCCCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

648

Amino Acids

72.42

Weight (kDa)

9.91

Isoelectric Point (pI)

37.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 398 - 524 8.4e-41 Cyclin, N-terminal domain
Cyclin_C PF02984 526 - 642 7.1e-34 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 16
AccB7I CCANNNNNTGG 1 cut(s) 366
AccI GTMKAC 1 cut(s) 446
AccII CGCG 2 cut(s) 11, 1282
AccIII TCCGGA 1 cut(s) 940
AciI CCGC 2 cut(s) 695, 1497
AclWI GGATC 5 cut(s) 95, 553, 808, 1099, 1481
AcsI RAATTY 5 cut(s) 220, 515, 640, 1287, 1322
AfaI GTAC 6 cut(s) 61, 112, 121, 358, 1679, 1886
AfiI CCNNNNNNNGG 7 cut(s) 366, 483, 723, 872, 1238, 1357, 1810
AflII CTTAAG 2 cut(s) 857, 1831
AflIII ACRYGT 1 cut(s) 1280
AhdI GACNNNNNGTC 1 cut(s) 960
AhlI ACTAGT 1 cut(s) 1081
AjuI GAANNNNNNNTTGG 2 cut(s) 706, 738
Alw26I GTCTC 5 cut(s) 406, 634, 947, 1334, 1804
AlwI GGATC 5 cut(s) 95, 553, 808, 1099, 1481
Aor13HI TCCGGA 1 cut(s) 940
ApeKI GCWGC 4 cut(s) 351, 697, 1613, 1847
ApoI RAATTY 5 cut(s) 220, 515, 640, 1287, 1322
Asp700I GAANNNNTTC 1 cut(s) 1137
AspA2I CCTAGG 1 cut(s) 1469
AspS9I GGNCC 2 cut(s) 410, 1764
AsuHPI GGTGA 1 cut(s) 1127
AsuII TTCGAA 1 cut(s) 644
AvaII GGWCC 2 cut(s) 410, 1764
AvrII CCTAGG 1 cut(s) 1469
AxyI CCTNAGG 1 cut(s) 1865
BanI GGYRCC 1 cut(s) 16
BbsI GAAGAC 2 cut(s) 140, 978
BbvI GCAGC 4 cut(s) 363, 709, 1600, 1834
BccI CCATC 1 cut(s) 1708
BceAI ACGGC 2 cut(s) 567, 778
BcgI CGANNNNNNTGC 2 cut(s) 1891, 1925
BclI TGATCA 2 cut(s) 1293, 1485
BcoDI GTCTC 5 cut(s) 406, 634, 947, 1334, 1804
BcuI ACTAGT 1 cut(s) 1081
BfaI CTAG 5 cut(s) 63, 665, 996, 1082, 1470
BfmI CTRYAG 2 cut(s) 915, 1215
BfrI CTTAAG 2 cut(s) 857, 1831
BglII AGATCT 1 cut(s) 890
BisI GCNGC 4 cut(s) 352, 698, 1614, 1848
BlnI CCTAGG 1 cut(s) 1469
BlpI GCTNAGC 1 cut(s) 701
BlsI GCNGC 4 cut(s) 353, 699, 1615, 1849
BmcAI AGTACT 1 cut(s) 61
Bme18I GGWCC 2 cut(s) 410, 1764
BmeRI GACNNNNNGTC 1 cut(s) 960
BmgT120I GGNCC 2 cut(s) 410, 1764
BmiI GGNNCC 3 cut(s) 18, 715, 1604
BmrI ACTGGG 2 cut(s) 271, 863
BmsI GCATC 5 cut(s) 1398, 1451, 1474, 1724, 1727
BmuI ACTGGG 2 cut(s) 271, 863
BpiI GAAGAC 2 cut(s) 140, 978
BpmI CTGGAG 1 cut(s) 1740
Bpu1102I GCTNAGC 1 cut(s) 701
Bpu14I TTCGAA 1 cut(s) 644
BpuEI CTTGAG 2 cut(s) 556, 963
BsaI GGTCTC 1 cut(s) 406
BsaJI CCNNGG 2 cut(s) 541, 1469
BsaWI WCCGGW 1 cut(s) 940
BsaXI ACNNNNNCTCC 2 cut(s) 1784, 1814
Bsc4I CCNNNNNNNGG 7 cut(s) 366, 483, 723, 872, 1238, 1357, 1810
Bse1I ACTGG 8 cut(s) 108, 266, 669, 869, 1274, 1304, 1466, 1757
Bse21I CCTNAGG 1 cut(s) 1865
Bse3DI GCAATG 1 cut(s) 181
BseAI TCCGGA 1 cut(s) 940
BseDI CCNNGG 2 cut(s) 541, 1469
BseGI GGATG 3 cut(s) 1036, 1195, 1465
BseLI CCNNNNNNNGG 7 cut(s) 366, 483, 723, 872, 1238, 1357, 1810
BseMI GCAATG 1 cut(s) 181
BseMII CTCAG 4 cut(s) 417, 447, 645, 1856
BseNI ACTGG 8 cut(s) 108, 266, 669, 869, 1274, 1304, 1466, 1757
BseRI GAGGAG 1 cut(s) 166
BseXI GCAGC 4 cut(s) 363, 709, 1600, 1834
BsgI GTGCAG 1 cut(s) 1413
Bsh1236I CGCG 2 cut(s) 11, 1282
BshNI GGYRCC 1 cut(s) 16
BsiSI CCGG 2 cut(s) 711, 941
BslFI GGGAC 2 cut(s) 677, 1254
BslI CCNNNNNNNGG 7 cut(s) 366, 483, 723, 872, 1238, 1357, 1810
BsmAI GTCTC 5 cut(s) 406, 634, 947, 1334, 1804
BsmFI GGGAC 2 cut(s) 677, 1254
BsmI GAATGC 1 cut(s) 1576
Bso31I GGTCTC 1 cut(s) 406
Bsp119I TTCGAA 1 cut(s) 644
Bsp13I TCCGGA 1 cut(s) 940
Bsp1720I GCTNAGC 1 cut(s) 701
Bsp68I TCGCGA 1 cut(s) 11
BspACI CCGC 2 cut(s) 695, 1497
BspCNI CTCAG 4 cut(s) 416, 446, 644, 1857
BspEI TCCGGA 1 cut(s) 940
BspFNI CGCG 2 cut(s) 11, 1282
BspLI GGNNCC 3 cut(s) 18, 715, 1604
BspMAI CTGCAG 2 cut(s) 919, 1219
BspPI GGATC 5 cut(s) 95, 553, 808, 1099, 1481
BspT104I TTCGAA 1 cut(s) 644
BspT107I GGYRCC 1 cut(s) 16
BspTI CTTAAG 2 cut(s) 857, 1831
BspTNI GGTCTC 1 cut(s) 406
BsrDI GCAATG 1 cut(s) 181
BsrI ACTGG 8 cut(s) 108, 266, 669, 869, 1274, 1304, 1466, 1757
BssECI CCNNGG 2 cut(s) 541, 1469
BssT1I CCWWGG 2 cut(s) 541, 1469
Bst4CI ACNGT 6 cut(s) 826, 848, 933, 1373, 1554, 1817
BstAFI CTTAAG 2 cut(s) 857, 1831
BstBI TTCGAA 1 cut(s) 644
BstC8I GCNNGC 1 cut(s) 679
BstDEI CTNAG 9 cut(s) 26, 329, 403, 433, 450, 631, 701, 1865, 1927
BstF5I GGATG 3 cut(s) 1036, 1195, 1465
BstFNI CGCG 2 cut(s) 11, 1282
BstMAI GTCTC 5 cut(s) 406, 634, 947, 1334, 1804
BstMWI GCNNNNNNNGC 2 cut(s) 674, 1705
BstSFI CTRYAG 2 cut(s) 915, 1215
BstUI CGCG 2 cut(s) 11, 1282
BstV1I GCAGC 4 cut(s) 363, 709, 1600, 1834
BstV2I GAAGAC 2 cut(s) 140, 978
BstX2I RGATCY 2 cut(s) 813, 890
BstXI CCANNNNNNTGG 1 cut(s) 1168
BstYI RGATCY 2 cut(s) 813, 890
Bsu36I CCTNAGG 1 cut(s) 1865
BtsCI GGATG 3 cut(s) 1036, 1195, 1465
BtsI GCAGTG 2 cut(s) 712, 1703
BtsIMutI CAGTG 5 cut(s) 441, 712, 876, 929, 1703
BtuMI TCGCGA 1 cut(s) 11
Cac8I GCNNGC 1 cut(s) 679
Cfr13I GGNCC 2 cut(s) 410, 1764
Csp6I GTAC 6 cut(s) 60, 111, 120, 357, 1678, 1885
CspCI CAANNNNNGTGG 2 cut(s) 463, 498
CviAII CATG 5 cut(s) 361, 1259, 1337, 1594, 1825
CviQI GTAC 6 cut(s) 60, 111, 120, 357, 1678, 1885
DdeI CTNAG 9 cut(s) 26, 329, 403, 433, 450, 631, 701, 1865, 1927
DraI TTTAAA 1 cut(s) 585
DriI GACNNNNNGTC 1 cut(s) 960
Eam1105I GACNNNNNGTC 1 cut(s) 960
Eco130I CCWWGG 2 cut(s) 541, 1469
Eco31I GGTCTC 1 cut(s) 406
Eco47I GGWCC 2 cut(s) 410, 1764
Eco81I CCTNAGG 1 cut(s) 1865
EcoT14I CCWWGG 2 cut(s) 541, 1469
EcoT22I ATGCAT 1 cut(s) 1338
ErhI CCWWGG 2 cut(s) 541, 1469
FaeI CATG 5 cut(s) 364, 1262, 1340, 1597, 1828
FalI AAGNNNNNCTT 2 cut(s) 277, 309
FaqI GGGAC 2 cut(s) 677, 1254
FatI CATG 5 cut(s) 360, 1258, 1336, 1593, 1824
FauI CCCGC 1 cut(s) 702
FauNDI CATATG 1 cut(s) 1749
FbaI TGATCA 2 cut(s) 1293, 1485
FblI GTMKAC 1 cut(s) 446
Fnu4HI GCNGC 4 cut(s) 352, 698, 1614, 1848
FokI GGATG 3 cut(s) 1043, 1202, 1452
Fsp4HI GCNGC 4 cut(s) 352, 698, 1614, 1848
FspBI CTAG 5 cut(s) 63, 665, 996, 1082, 1470
GluI GCNGC 4 cut(s) 352, 698, 1614, 1848
GsuI CTGGAG 1 cut(s) 1740
HapII CCGG 2 cut(s) 711, 941
Hin1II CATG 5 cut(s) 364, 1262, 1340, 1597, 1828
HindIII AAGCTT 3 cut(s) 291, 1631, 1683
HinfI GANTC 7 cut(s) 136, 228, 334, 1157, 1342, 1502, 1753
HpaII CCGG 2 cut(s) 711, 941
HphI GGTGA 1 cut(s) 1127
Hpy166II GTNNAC 1 cut(s) 447
Hpy188I TCNGA 6 cut(s) 85, 93, 393, 513, 760, 1822
Hpy188III TCNNGA 9 cut(s) 10, 225, 811, 817, 888, 941, 965, 1895, 1918
Hpy8I GTNNAC 1 cut(s) 447
Hpy99I CGWCG 1 cut(s) 1913
HpyAV CCTTC 5 cut(s) 7, 208, 918, 1657, 1804
HpyCH4III ACNGT 6 cut(s) 826, 848, 933, 1373, 1554, 1817
HpyCH4IV ACGT 3 cut(s) 786, 1057, 1908
HpyF10VI GCNNNNNNNGC 2 cut(s) 674, 1705
HpyF3I CTNAG 9 cut(s) 26, 329, 403, 433, 450, 631, 701, 1865, 1927
HpySE526I ACGT 3 cut(s) 786, 1057, 1908
Hsp92II CATG 5 cut(s) 364, 1262, 1340, 1597, 1828
Kpn2I TCCGGA 1 cut(s) 940
Ksp22I TGATCA 2 cut(s) 1293, 1485
LmnI GCTCC 2 cut(s) 185, 1776
Lsp1109I GCAGC 4 cut(s) 363, 709, 1600, 1834
LweI GCATC 5 cut(s) 1398, 1451, 1474, 1724, 1727
MaeI CTAG 5 cut(s) 63, 665, 996, 1082, 1470
MaeII ACGT 3 cut(s) 786, 1057, 1908
MaeIII GTNAC 8 cut(s) 163, 280, 933, 1033, 1276, 1373, 1870, 1904
MboII GAAGA 8 cut(s) 70, 142, 145, 223, 891, 903, 980, 983
MfeI CAATTG 2 cut(s) 650, 1412
MflI RGATCY 2 cut(s) 813, 890
MluCI AATT 8 cut(s) 168, 220, 515, 640, 650, 1287, 1322, 1412
MluI ACGCGT 1 cut(s) 1280
MlyI GAGTC 3 cut(s) 130, 1336, 1747
MmeI TCCRAC 3 cut(s) 362, 437, 1008
MnlI CCTC 9 cut(s) 144, 259, 608, 934, 1388, 1447, 1593, 1777, 1860
Mph1103I ATGCAT 1 cut(s) 1338
MroI TCCGGA 1 cut(s) 940
MroXI GAANNNNTTC 1 cut(s) 1137
MseI TTAA 9 cut(s) 305, 584, 614, 638, 858, 1226, 1548, 1556, 1832
MslI CAYNNNNRTG 3 cut(s) 1401, 1708, 1794
MspA1I CMGCKG 1 cut(s) 1168
MspCI CTTAAG 2 cut(s) 857, 1831
MspI CCGG 2 cut(s) 711, 941
MunI CAATTG 2 cut(s) 650, 1412
Mva1269I GAATGC 1 cut(s) 1576
MvnI CGCG 2 cut(s) 11, 1282
MwoI GCNNNNNNNGC 2 cut(s) 674, 1705
NdeI CATATG 1 cut(s) 1749
NlaIII CATG 5 cut(s) 364, 1262, 1340, 1597, 1828
NlaIV GGNNCC 3 cut(s) 18, 715, 1604
NmuCI GTSAC 3 cut(s) 280, 933, 1870
NruI TCGCGA 1 cut(s) 11
NsiI ATGCAT 1 cut(s) 1338
NspV TTCGAA 1 cut(s) 644
PcsI WCGNNNNNNNCGW 1 cut(s) 792
PctI GAATGC 1 cut(s) 1576
PdmI GAANNNNTTC 1 cut(s) 1137
PfeI GAWTC 4 cut(s) 228, 334, 1157, 1502
PflMI CCANNNNNTGG 1 cut(s) 366
PkrI GCNGC 4 cut(s) 353, 699, 1615, 1849
PleI GAGTC 3 cut(s) 130, 1336, 1747
PpsI GAGTC 3 cut(s) 130, 1336, 1747
PspN4I GGNNCC 3 cut(s) 18, 715, 1604
PspPI GGNCC 2 cut(s) 410, 1764
PstI CTGCAG 2 cut(s) 919, 1219
PsuI RGATCY 2 cut(s) 813, 890
PvuII CAGCTG 1 cut(s) 1168
RruI TCGCGA 1 cut(s) 11
RsaI GTAC 6 cut(s) 61, 112, 121, 358, 1679, 1886
RsaNI GTAC 6 cut(s) 60, 111, 120, 357, 1678, 1885
RseI CAYNNNNRTG 3 cut(s) 1401, 1708, 1794
SaqAI TTAA 9 cut(s) 305, 584, 614, 638, 858, 1226, 1548, 1556, 1832
SatI GCNGC 4 cut(s) 352, 698, 1614, 1848
Sau96I GGNCC 2 cut(s) 410, 1764
ScaI AGTACT 1 cut(s) 61
SchI GAGTC 3 cut(s) 130, 1336, 1747
SfaNI GCATC 5 cut(s) 1398, 1451, 1474, 1724, 1727
SfcI CTRYAG 2 cut(s) 915, 1215
SfuI TTCGAA 1 cut(s) 644
SinI GGWCC 2 cut(s) 410, 1764
SmiMI CAYNNNNRTG 3 cut(s) 1401, 1708, 1794
SmlI CTYRAG 4 cut(s) 535, 857, 978, 1831
SmoI CTYRAG 4 cut(s) 535, 857, 978, 1831
SpeI ACTAGT 1 cut(s) 1081
Sse9I AATT 8 cut(s) 168, 220, 515, 640, 650, 1287, 1322, 1412
SsiI CCGC 2 cut(s) 695, 1497
SspMI CTAG 5 cut(s) 63, 665, 996, 1082, 1470
StyI CCWWGG 2 cut(s) 541, 1469
TaaI ACNGT 6 cut(s) 826, 848, 933, 1373, 1554, 1817
TaiI ACGT 3 cut(s) 789, 1060, 1911
TaqI TCGA 7 cut(s) 52, 224, 644, 733, 1101, 1308, 1659
TasI AATT 8 cut(s) 168, 220, 515, 640, 650, 1287, 1322, 1412
TatI WGTACW 3 cut(s) 59, 110, 1884
TfiI GAWTC 4 cut(s) 228, 334, 1157, 1502
Tru1I TTAA 9 cut(s) 305, 584, 614, 638, 858, 1226, 1548, 1556, 1832
Tru9I TTAA 9 cut(s) 305, 584, 614, 638, 858, 1226, 1548, 1556, 1832
TscAI CASTG 5 cut(s) 441, 712, 876, 936, 1710
TseFI GTSAC 3 cut(s) 280, 933, 1870
TseI GCWGC 4 cut(s) 351, 697, 1613, 1847
Tsp45I GTSAC 3 cut(s) 280, 933, 1870
TspDTI ATGAA 8 cut(s) 224, 377, 508, 981, 1170, 1304, 1582, 1823
TspGWI ACGGA 2 cut(s) 779, 1553
TspRI CASTG 5 cut(s) 441, 712, 876, 936, 1710
Van91I CCANNNNNTGG 1 cut(s) 366
Vha464I CTTAAG 2 cut(s) 857, 1831
VpaK11BI GGWCC 2 cut(s) 410, 1764
XapI RAATTY 5 cut(s) 220, 515, 640, 1287, 1322
XmaJI CCTAGG 1 cut(s) 1469
XmiI GTMKAC 1 cut(s) 446
XmnI GAANNNNTTC 1 cut(s) 1137
XspI CTAG 5 cut(s) 63, 665, 996, 1082, 1470
ZrmI AGTACT 1 cut(s) 61
Zsp2I ATGCAT 1 cut(s) 1338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.