Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007438

Physical Location & Seq

Genomic Coordinates Reverse (-)

23912843 .. 23913849

Gene Structure 1007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g21260.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGACTGGATCAAAGTTATTAGAGGACCGTGTTGAAGCTTTGAAGGCAGAAGAGATGCCAAGCATTGATGACGACTGCAATCAACCGGAAGTTTCCGATTATGTTGATAAGATCGATCAGTATTACTGGGTTTCTGAGGCACAGAATCAACCTCCAGAAAATTTAATGTCGATTCAGGCAGACATTGCTCCTCATATGCGAGGCATATTGGTCAACTGGTTAATTGAAGTACACTACAAATTCGAGTTAATGCAAGAAACTCTTTATCTCGTGGTGACATTGCTCGGTCAATATCTTTCCCAAGTCACAATTAAGAAGGATGACATGCAGTTAGTTGGTCTCACTGCACTCTTGTTGGCATCAAGTATGAGGACTTTTGGCATCCAAGGGTCAAAGATAGCATCTCAGCTGAGACATACACGAGAGCACAGGTGCTTGGAATGGAGAAAGCCCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

153

Amino Acids

17.59

Weight (kDa)

5.04

Isoelectric Point (pI)

30.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16330
fragaria_vesca	FvH4_3g14512 FvH4_3g14512 FvH4_3g14512 FvH4_3g14512 FvH4_3g14512 FvH4_3g14512
malus_domestica	MD05G1264400.v1.1 MD10G1212300.v1.1
prunus_persica	Prupe.4G130400_v2.0.a1 Prupe.4G130400_v2.0.a1 Prupe.4G130400_v2.0.a1
pyrus_communis	pycom05g21260 pycom10g17990
rosa_chinensis	RchiOBHm_Chr5g0023901
rosa_laevigata	RLG00000032747
rosa_multiflora	Rmu_sc0004175.1_g000014 Rmu_sc0005837.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055310
rosa_rugosa	Rorug05G0080200
rosa_samantha	Rh5AG170500 Rh5BG167600 Rh5CG183100 Rh5DG169700
rosa_wichuraiana	Rw5G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	16
AcsI	RAATTY	2 cut(s)	160, 239
AfaI	GTAC	1 cut(s)	231
AgsI	TTSAA	3 cut(s)	35, 43, 227
AluBI	AGCT	2 cut(s)	38, 409
AluI	AGCT	2 cut(s)	38, 409
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	2 cut(s)	344, 406
AlwI	GGATC	1 cut(s)	16
ApoI	RAATTY	2 cut(s)	160, 239
AspS9I	GGNCC	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	286
AvaII	GGWCC	1 cut(s)	25
BauI	CACGAG	2 cut(s)	269, 420
Bbv12I	GWGCWC	1 cut(s)	429
BcoDI	GTCTC	2 cut(s)	344, 406
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	25
BmrI	ACTGGG	1 cut(s)	136
BmsI	GCATC	4 cut(s)	45, 368, 390, 410
BmuI	ACTGGG	1 cut(s)	136
BpmI	CTGGAG	1 cut(s)	138
Bsa29I	ATCGAT	1 cut(s)	114
BsaI	GGTCTC	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	385
BsaWI	WCCGGW	1 cut(s)	85
Bse1I	ACTGG	3 cut(s)	10, 131, 221
Bse3DI	GCAATG	2 cut(s)	183, 278
BseCI	ATCGAT	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	385
BseGI	GGATG	2 cut(s)	325, 381
BseMI	GCAATG	2 cut(s)	183, 278
BseMII	CTCAG	3 cut(s)	126, 401, 419
BseNI	ACTGG	3 cut(s)	10, 131, 221
BseRI	GAGGAG	1 cut(s)	180
BsgI	GTGCAG	1 cut(s)	330
BshVI	ATCGAT	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	429
BsiSI	CCGG	1 cut(s)	86
BsmAI	GTCTC	2 cut(s)	344, 406
Bso31I	GGTCTC	1 cut(s)	344
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp143I	GATC	3 cut(s)	8, 111, 115
BspCNI	CTCAG	3 cut(s)	127, 402, 418
BspDI	ATCGAT	1 cut(s)	114
BspPI	GGATC	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	344
BsrDI	GCAATG	2 cut(s)	183, 278
BsrI	ACTGG	3 cut(s)	10, 131, 221
BssECI	CCNNGG	1 cut(s)	385
BssMI	GATC	3 cut(s)	8, 111, 115
BssSI	CACGAG	2 cut(s)	269, 420
BssT1I	CCWWGG	1 cut(s)	385
Bst2BI	CACGAG	2 cut(s)	269, 420
Bst4CI	ACNGT	1 cut(s)	29
Bst6I	CTCTTC	1 cut(s)	45
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstDEI	CTNAG	3 cut(s)	135, 405, 410
BstF5I	GGATG	2 cut(s)	325, 381
BstKTI	GATC	3 cut(s)	11, 114, 118
BstMAI	GTCTC	2 cut(s)	344, 406
BstMBI	GATC	3 cut(s)	8, 111, 115
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 185
BstNSI	RCATGY	1 cut(s)	328
Bsu15I	ATCGAT	1 cut(s)	114
BsuTUI	ATCGAT	1 cut(s)	114
BtsCI	GGATG	2 cut(s)	325, 381
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	25
ClaI	ATCGAT	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	230
CviAII	CATG	1 cut(s)	325
CviJI	RGCY	3 cut(s)	38, 409, 451
CviKI_1	RGCY	3 cut(s)	38, 409, 451
CviQI	GTAC	1 cut(s)	230
DdeI	CTNAG	3 cut(s)	135, 405, 410
DpnI	GATC	3 cut(s)	10, 113, 117
DpnII	GATC	3 cut(s)	8, 111, 115
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	385
Eco31I	GGTCTC	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	385
ErhI	CCWWGG	1 cut(s)	385
FaeI	CATG	1 cut(s)	328
FaiI	YATR	7 cut(s)	102, 195, 197, 206, 326, 368, 417
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FatI	CATG	1 cut(s)	324
FauNDI	CATATG	1 cut(s)	195
FokI	GGATG	2 cut(s)	332, 368
GsuI	CTGGAG	1 cut(s)	138
HapII	CCGG	1 cut(s)	86
Hin1II	CATG	1 cut(s)	328
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	36
HinfI	GANTC	2 cut(s)	145, 172
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	2 cut(s)	214, 232
Hpy188I	TCNGA	3 cut(s)	97, 136, 458
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	2 cut(s)	214, 232
HpyAV	CCTTC	2 cut(s)	37, 310
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4V	TGCA	4 cut(s)	78, 253, 328, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 185
HpyF3I	CTNAG	3 cut(s)	135, 405, 410
Hsp92II	CATG	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	8, 111, 115
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	6 cut(s)	99, 112, 161, 168, 202, 415
LweI	GCATC	4 cut(s)	45, 368, 390, 410
MaeIII	GTNAC	2 cut(s)	274, 304
MalI	GATC	3 cut(s)	10, 113, 117
MboI	GATC	3 cut(s)	8, 111, 115
MboII	GAAGA	1 cut(s)	62
MhlI	GDGCHC	1 cut(s)	429
MluCI	AATT	4 cut(s)	160, 222, 239, 309
MnlI	CCTC	6 cut(s)	16, 130, 162, 194, 201, 363
MseI	TTAA	4 cut(s)	164, 221, 248, 312
MspA1I	CMGCKG	1 cut(s)	409
MspI	CCGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	44, 185
NdeI	CATATG	1 cut(s)	195
NdeII	GATC	3 cut(s)	8, 111, 115
NlaIII	CATG	1 cut(s)	328
NmuCI	GTSAC	2 cut(s)	274, 304
NspI	RCATGY	1 cut(s)	328
PfeI	GAWTC	2 cut(s)	145, 172
PspPI	GGNCC	1 cut(s)	25
PvuII	CAGCTG	1 cut(s)	409
RsaI	GTAC	1 cut(s)	231
RsaNI	GTAC	1 cut(s)	230
SaqAI	TTAA	4 cut(s)	164, 221, 248, 312
Sau3AI	GATC	3 cut(s)	8, 111, 115
Sau96I	GGNCC	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	429
SetI	ASST	4 cut(s)	40, 154, 411, 434
SfaNI	GCATC	4 cut(s)	45, 368, 390, 410
SinI	GGWCC	1 cut(s)	25
Sse9I	AATT	4 cut(s)	160, 222, 239, 309
StyI	CCWWGG	1 cut(s)	385
TaaI	ACNGT	1 cut(s)	29
TaqI	TCGA	3 cut(s)	114, 170, 243
TaqII	GACCGA	1 cut(s)	275
TasI	AATT	4 cut(s)	160, 222, 239, 309
TatI	WGTACW	1 cut(s)	229
TfiI	GAWTC	2 cut(s)	145, 172
Tru1I	TTAA	4 cut(s)	164, 221, 248, 312
Tru9I	TTAA	4 cut(s)	164, 221, 248, 312
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	2 cut(s)	274, 304
Tsp45I	GTSAC	2 cut(s)	274, 304
TspRI	CASTG	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	25
XapI	RAATTY	2 cut(s)	160, 239
XceI	RCATGY	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.