MD05G1264400.v1.1

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0007438
Physical Location & Seq
Forward (+)
39958699 .. 39962533
3835 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1264400.v1.1.491

Sequence Viewer

Length: 558 bp
ATGTCTCTTATGGGTCAGCGTAATTCAAATGTCCGTTTATTGACAAGAAATTCTGTCAGGCCAACTGTGTCCACACTAAAGGCTCGTGAGTCGCAAAGGACTTTGAAATCCAAGGGTGCATCAGGTCCAAATAAATTAGTTTCTGCTACTGCAACTTCATCCAAAACTGACAAAGTGGCCACTTCTTCTCTTCCTGAGAACGTTAAGCATGAAGCCACTCAGGGAGAGCTCCCATCTGAAGCCAACTGCAGCCAGAGTGCTTCAACTATCATTTCCAGGAGAAAATCAAATAGGAGGAGATCTTACACATCTCTATTGATGACTGGATCAAGGTTACTGGAGGACCGTGTTGAAGCTTTGAAGGAGGAAGAGCTGCCAAGTATTGATGACGATTGCAAGCAACTGGAAGTTTCCGATTATGTTGATGAGATCTACCAGTATTACTGGGTTTCTGAGTCACAGAATCCACCTGCAGAAAATTTCATGTCGATTCAGGCAGGCATTACTCATCATATGCGAGGCATATTGGTCAACTGGTTAATTGAAGTACCGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

186

Amino Acids

20.67

Weight (kDa)

8.55

Isoelectric Point (pI)

52.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 143 - 183 1e-06 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 478
Acc36I ACCTGC 1 cut(s) 478
AclI AACGTT 1 cut(s) 201
AclWI GGATC 1 cut(s) 334
AcoI YGGCCR 1 cut(s) 177
AcsI RAATTY 2 cut(s) 49, 478
AcuI CTGAAG 1 cut(s) 258
AfaI GTAC 1 cut(s) 549
AgsI TTSAA 6 cut(s) 27, 106, 264, 353, 361, 545
AjnI CCWGG 1 cut(s) 275
AluBI AGCT 3 cut(s) 229, 356, 373
AluI AGCT 3 cut(s) 229, 356, 373
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 334
AoxI GGCC 2 cut(s) 59, 177
ApeKI GCWGC 2 cut(s) 249, 373
ApoI RAATTY 2 cut(s) 49, 478
AspS9I GGNCC 2 cut(s) 125, 343
AvaII GGWCC 2 cut(s) 125, 343
BalI TGGCCA 1 cut(s) 179
BanII GRGCYC 1 cut(s) 231
BauI CACGAG 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 261, 360
BccI CCATC 1 cut(s) 241
BciT130I CCWGG 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 9
BfmI CTRYAG 2 cut(s) 247, 471
BfuAI ACCTGC 1 cut(s) 478
BglII AGATCT 2 cut(s) 299, 429
BisI GCNGC 2 cut(s) 250, 374
BlsI GCNGC 2 cut(s) 251, 375
Bme1390I CCNGG 1 cut(s) 277
Bme18I GGWCC 2 cut(s) 125, 343
BmgT120I GGNCC 2 cut(s) 125, 343
BmrFI CCNGG 1 cut(s) 277
BmrI ACTGGG 1 cut(s) 454
BmsI GCATC 1 cut(s) 128
BmuI ACTGGG 1 cut(s) 454
BpmI CTGGAG 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 111
Bse1I ACTGG 6 cut(s) 328, 342, 408, 436, 449, 539
BseBI CCWGG 1 cut(s) 277
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 158
BseMII CTCAG 3 cut(s) 186, 233, 444
BseNI ACTGG 6 cut(s) 328, 342, 408, 436, 449, 539
BseRI GAGGAG 1 cut(s) 310
BseXI GCAGC 2 cut(s) 261, 360
BshFI GGCC 2 cut(s) 61, 179
BsiHKAI GWGCWC 1 cut(s) 231
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 2 cut(s) 61, 179
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 3 cut(s) 299, 326, 429
BspANI GGCC 2 cut(s) 61, 179
BspCNI CTCAG 3 cut(s) 187, 232, 445
BspMAI CTGCAG 2 cut(s) 251, 475
BspMI ACCTGC 1 cut(s) 478
BspPI GGATC 1 cut(s) 334
BspQI GCTCTTC 1 cut(s) 363
BsrI ACTGG 6 cut(s) 328, 342, 408, 436, 449, 539
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 3 cut(s) 299, 326, 429
BssSI CACGAG 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 111
Bst2BI CACGAG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 277
Bst4CI ACNGT 2 cut(s) 67, 347
Bst6I CTCTTC 2 cut(s) 195, 363
BstC8I GCNNGC 2 cut(s) 398, 499
BstDEI CTNAG 3 cut(s) 195, 219, 453
BstF5I GGATG 1 cut(s) 158
BstKTI GATC 3 cut(s) 302, 329, 432
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 299, 326, 429
BstNI CCWGG 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 275
BstSFI CTRYAG 2 cut(s) 247, 471
BstV1I GCAGC 2 cut(s) 261, 360
BstX2I RGATCY 2 cut(s) 299, 429
BstYI RGATCY 2 cut(s) 299, 429
BsuRI GGCC 2 cut(s) 61, 179
BtsCI GGATG 1 cut(s) 158
BveI ACCTGC 1 cut(s) 478
Cac8I GCNNGC 2 cut(s) 398, 499
Cfr13I GGNCC 2 cut(s) 125, 343
Csp6I GTAC 1 cut(s) 548
CviAII CATG 2 cut(s) 209, 484
CviJI RGCY 9 cut(s) 61, 83, 179, 215, 229, 242, 252, 356, 373
CviKI_1 RGCY 9 cut(s) 61, 83, 179, 215, 229, 242, 252, 356, 373
CviQI GTAC 1 cut(s) 548
DdeI CTNAG 3 cut(s) 195, 219, 453
DpnI GATC 3 cut(s) 301, 328, 431
DpnII GATC 3 cut(s) 299, 326, 429
EaeI YGGCCR 1 cut(s) 177
Eam1104I CTCTTC 2 cut(s) 195, 363
EarI CTCTTC 2 cut(s) 195, 363
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 231
Eco47I GGWCC 2 cut(s) 125, 343
Eco53kI GAGCTC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 258
EcoICRI GAGCTC 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 2 cut(s) 212, 487
FaiI YATR 7 cut(s) 11, 210, 420, 485, 513, 515, 524
FatI CATG 2 cut(s) 208, 483
FauNDI CATATG 1 cut(s) 513
Fnu4HI GCNGC 2 cut(s) 250, 374
FokI GGATG 1 cut(s) 145
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 2 cut(s) 250, 374
GluI GCNGC 2 cut(s) 250, 374
GsuI CTGGAG 1 cut(s) 359
HaeIII GGCC 2 cut(s) 61, 179
Hin1II CATG 2 cut(s) 212, 487
HincII GTYRAC 1 cut(s) 532
HindII GTYRAC 1 cut(s) 532
HindIII AAGCTT 1 cut(s) 354
HinfI GANTC 4 cut(s) 89, 455, 463, 490
Hpy166II GTNNAC 2 cut(s) 72, 532
Hpy188I TCNGA 3 cut(s) 238, 415, 454
Hpy188III TCNNGA 2 cut(s) 86, 194
Hpy8I GTNNAC 2 cut(s) 72, 532
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 2 cut(s) 67, 347
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 5 cut(s) 119, 152, 249, 396, 473
HpyF3I CTNAG 3 cut(s) 195, 219, 453
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 2 cut(s) 212, 487
Kzo9I GATC 3 cut(s) 299, 326, 429
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 1 cut(s) 234
Lsp1109I GCAGC 2 cut(s) 261, 360
LweI GCATC 1 cut(s) 128
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 2 cut(s) 333, 456
MalI GATC 3 cut(s) 301, 328, 431
MboI GATC 3 cut(s) 299, 326, 429
MboII GAAGA 3 cut(s) 177, 182, 380
MflI RGATCY 2 cut(s) 299, 429
MhlI GDGCHC 1 cut(s) 231
MlsI TGGCCA 1 cut(s) 179
MluCI AATT 5 cut(s) 22, 49, 134, 478, 540
MluNI TGGCCA 1 cut(s) 179
MlyI GAGTC 2 cut(s) 98, 464
MnlI CCTC 4 cut(s) 288, 334, 358, 512
Mox20I TGGCCA 1 cut(s) 179
MscI TGGCCA 1 cut(s) 179
MseI TTAA 3 cut(s) 204, 539, 556
Msp20I TGGCCA 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 277
MvaI CCWGG 1 cut(s) 277
NdeI CATATG 1 cut(s) 513
NdeII GATC 3 cut(s) 299, 326, 429
NlaIII CATG 2 cut(s) 212, 487
NmuCI GTSAC 1 cut(s) 456
PaqCI CACCTGC 1 cut(s) 478
PciSI GCTCTTC 1 cut(s) 363
PfeI GAWTC 2 cut(s) 463, 490
PfoI TCCNGGA 1 cut(s) 275
PkrI GCNGC 2 cut(s) 251, 375
PleI GAGTC 2 cut(s) 97, 463
PpsI GAGTC 2 cut(s) 97, 463
Psp124BI GAGCTC 1 cut(s) 231
Psp1406I AACGTT 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 275
PspGI CCWGG 1 cut(s) 275
PspPI GGNCC 2 cut(s) 125, 343
PstI CTGCAG 2 cut(s) 251, 475
PsuI RGATCY 2 cut(s) 299, 429
RsaI GTAC 1 cut(s) 549
RsaNI GTAC 1 cut(s) 548
SacI GAGCTC 1 cut(s) 231
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 3 cut(s) 204, 539, 556
SatI GCNGC 2 cut(s) 250, 374
Sau3AI GATC 3 cut(s) 299, 326, 429
Sau96I GGNCC 2 cut(s) 125, 343
SchI GAGTC 2 cut(s) 98, 464
ScrFI CCNGG 1 cut(s) 277
SduI GDGCHC 1 cut(s) 231
SetI ASST 7 cut(s) 127, 204, 231, 335, 358, 375, 472
SfaNI GCATC 1 cut(s) 128
SfcI CTRYAG 2 cut(s) 247, 471
SinI GGWCC 2 cut(s) 125, 343
Sse9I AATT 5 cut(s) 22, 49, 134, 478, 540
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 275
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 2 cut(s) 67, 347
TaiI ACGT 1 cut(s) 204
TaqI TCGA 1 cut(s) 488
TasI AATT 5 cut(s) 22, 49, 134, 478, 540
TfiI GAWTC 2 cut(s) 463, 490
Tru1I TTAA 3 cut(s) 204, 539, 556
Tru9I TTAA 3 cut(s) 204, 539, 556
TseFI GTSAC 1 cut(s) 456
TseI GCWGC 2 cut(s) 249, 373
Tsp45I GTSAC 1 cut(s) 456
TspDTI ATGAA 3 cut(s) 147, 225, 472
TspGWI ACGGA 1 cut(s) 23
VpaK11BI GGWCC 2 cut(s) 125, 343
XapI RAATTY 2 cut(s) 49, 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.