Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007438

Physical Location & Seq

Genomic Coordinates Forward (+)

6955887 .. 6956231

Gene Structure 345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0080200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGTCCTGTTGACATTTGCTTTCTTCATTGTTTCATTTCTTTTCTTCTGCATAGCTCTAAGGTTTGAGCACAAGATAAGACTTGCCAGGCTAGAGCAACATCACAATGAACTCCAAAGGCAACTTGAAGAGGAGAGGGAACGATCTCAGAGGCTGGATACATGGACAAGGCAGCTTCAGACCGAGAACTCGATCAGCCTCGAAATGGAGGGGCTTGATAGTGAAGAGCTTGACAGATTGCGGACCAGATTGCTAGAGTTGCAGACGTTGATCAGAAATCAAATGAGAGAGAGGAGCTCGGGTGACTCCGCGTCTTCTTCCTCCGCCGATAAGAAATCTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

114

Amino Acids

13.6

Weight (kDa)

5.68

Isoelectric Point (pI)

56.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16330
fragaria_vesca	FvH4_3g14512 FvH4_3g14512 FvH4_3g14512 FvH4_3g14512 FvH4_3g14512 FvH4_3g14512
malus_domestica	MD05G1264400.v1.1 MD10G1212300.v1.1
prunus_persica	Prupe.4G130400_v2.0.a1 Prupe.4G130400_v2.0.a1 Prupe.4G130400_v2.0.a1
pyrus_communis	pycom05g21260 pycom10g17990
rosa_chinensis	RchiOBHm_Chr5g0023901
rosa_laevigata	RLG00000032747
rosa_multiflora	Rmu_sc0004175.1_g000014 Rmu_sc0005837.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055310
rosa_rugosa	Rorug05G0080200
rosa_samantha	Rh5AG170500 Rh5BG167600 Rh5CG183100 Rh5DG169700
rosa_wichuraiana	Rw5G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	311
AciI	CCGC	3 cut(s)	241, 309, 324
AcuI	CTGAAG	1 cut(s)	161
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	1 cut(s)	128
AhdI	GACNNNNNGTC	1 cut(s)	310
AjnI	CCWGG	1 cut(s)	86
AluBI	AGCT	4 cut(s)	56, 175, 229, 297
AluI	AGCT	4 cut(s)	56, 175, 229, 297
Alw21I	GWGCWC	2 cut(s)	72, 299
AlwNI	CAGNNNCTG	1 cut(s)	154
Ama87I	CYCGRG	1 cut(s)	298
ApeKI	GCWGC	1 cut(s)	172
AspS9I	GGNCC	2 cut(s)	4, 243
AsuHPI	GGTGA	1 cut(s)	314
AvaI	CYCGRG	1 cut(s)	298
AvaII	GGWCC	2 cut(s)	4, 243
BanII	GRGCYC	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	2 cut(s)	72, 299
BbvI	GCAGC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	88
BciVI	GTATCC	1 cut(s)	151
BclI	TGATCA	1 cut(s)	270
BfaI	CTAG	2 cut(s)	92, 254
BfuI	GTATCC	1 cut(s)	151
BisI	GCNGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	88
Bme18I	GGWCC	2 cut(s)	4, 243
BmeRI	GACNNNNNGTC	1 cut(s)	310
BmeT110I	CYCGRG	1 cut(s)	298
BmgT120I	GGNCC	2 cut(s)	4, 243
BmrFI	CCNGG	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	306
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
BsaXI	ACNNNNNCTCC	2 cut(s)	286, 316
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMII	CTCAG	2 cut(s)	161, 330
BseRI	GAGGAG	2 cut(s)	146, 307
BseXI	GCAGC	1 cut(s)	184
Bsh1236I	CGCG	1 cut(s)	311
BsiHKAI	GWGCWC	2 cut(s)	72, 299
BsiHKCI	CYCGRG	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	205
BsoBI	CYCGRG	1 cut(s)	298
Bsp1286I	GDGCHC	2 cut(s)	72, 299
Bsp143I	GATC	3 cut(s)	143, 192, 270
BspACI	CCGC	3 cut(s)	241, 309, 324
BspCNI	CTCAG	2 cut(s)	160, 331
BspFNI	CGCG	1 cut(s)	311
BspQI	GCTCTTC	1 cut(s)	219
BssMI	GATC	3 cut(s)	143, 192, 270
Bst2UI	CCWGG	1 cut(s)	88
Bst6I	CTCTTC	2 cut(s)	123, 219
BstDEI	CTNAG	3 cut(s)	59, 147, 339
BstFNI	CGCG	1 cut(s)	311
BstKTI	GATC	3 cut(s)	146, 195, 273
BstMBI	GATC	3 cut(s)	143, 192, 270
BstMWI	GCNNNNNNNGC	1 cut(s)	259
BstNI	CCWGG	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	86
BstUI	CGCG	1 cut(s)	311
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	306
BsuI	GTATCC	1 cut(s)	151
CaiI	CAGNNNCTG	1 cut(s)	154
Cfr13I	GGNCC	2 cut(s)	4, 243
CseI	GACGC	1 cut(s)	300
CviAII	CATG	1 cut(s)	162
CviJI	RGCY	8 cut(s)	56, 91, 154, 175, 198, 214, 229, 297
CviKI_1	RGCY	8 cut(s)	56, 91, 154, 175, 198, 214, 229, 297
DdeI	CTNAG	3 cut(s)	59, 147, 339
DpnI	GATC	3 cut(s)	145, 194, 272
DpnII	GATC	3 cut(s)	143, 192, 270
DriI	GACNNNNNGTC	1 cut(s)	310
Eam1104I	CTCTTC	2 cut(s)	123, 219
Eam1105I	GACNNNNNGTC	1 cut(s)	310
EarI	CTCTTC	2 cut(s)	123, 219
EciI	GGCGGA	1 cut(s)	313
Ecl136II	GAGCTC	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	299
Eco47I	GGWCC	2 cut(s)	4, 243
Eco53kI	GAGCTC	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	161
Eco88I	CYCGRG	1 cut(s)	298
EcoICRI	GAGCTC	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	86
EcoT38I	GRGCYC	1 cut(s)	299
FaeI	CATG	1 cut(s)	165
FaiI	YATR	2 cut(s)	53, 163
FatI	CATG	1 cut(s)	161
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	173
FriOI	GRGCYC	1 cut(s)	299
Fsp4HI	GCNGC	1 cut(s)	173
FspBI	CTAG	2 cut(s)	92, 254
GluI	GCNGC	1 cut(s)	173
HgaI	GACGC	1 cut(s)	300
Hin1II	CATG	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	1 cut(s)	305
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	4 cut(s)	150, 180, 275, 340
Hpy8I	GTNNAC	1 cut(s)	12
HpyCH4IV	ACGT	1 cut(s)	266
HpyCH4V	TGCA	2 cut(s)	51, 262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	259
HpyF3I	CTNAG	3 cut(s)	59, 147, 339
HpySE526I	ACGT	1 cut(s)	266
Hsp92II	CATG	1 cut(s)	165
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	3 cut(s)	143, 192, 270
LguI	GCTCTTC	1 cut(s)	219
LmnI	GCTCC	1 cut(s)	294
LpnPI	CCDG	5 cut(s)	20, 73, 100, 140, 259
Lsp1109I	GCAGC	1 cut(s)	184
MaeI	CTAG	2 cut(s)	92, 254
MaeII	ACGT	1 cut(s)	266
MaeIII	GTNAC	1 cut(s)	302
MalI	GATC	3 cut(s)	145, 194, 272
MboI	GATC	3 cut(s)	143, 192, 270
MboII	GAAGA	6 cut(s)	16, 37, 140, 236, 306, 309
MhlI	GDGCHC	2 cut(s)	72, 299
MlyI	GAGTC	1 cut(s)	299
MnlI	CCTC	7 cut(s)	124, 129, 144, 202, 209, 285, 331
MslI	CAYNNNNRTG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	88
MvnI	CGCG	1 cut(s)	311
MwoI	GCNNNNNNNGC	1 cut(s)	259
NdeII	GATC	3 cut(s)	143, 192, 270
NlaIII	CATG	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	302
PciSI	GCTCTTC	1 cut(s)	219
PkrI	GCNGC	1 cut(s)	174
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
Psp124BI	GAGCTC	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	86
PspPI	GGNCC	2 cut(s)	4, 243
PstNI	CAGNNNCTG	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	105
SacI	GAGCTC	1 cut(s)	299
SapI	GCTCTTC	1 cut(s)	219
SatI	GCNGC	1 cut(s)	173
Sau3AI	GATC	3 cut(s)	143, 192, 270
Sau96I	GGNCC	2 cut(s)	4, 243
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	88
SduI	GDGCHC	2 cut(s)	72, 299
SetI	ASST	6 cut(s)	58, 65, 177, 231, 269, 299
SinI	GGWCC	2 cut(s)	4, 243
SmiMI	CAYNNNNRTG	1 cut(s)	105
SsiI	CCGC	3 cut(s)	241, 309, 324
SspMI	CTAG	2 cut(s)	92, 254
SstI	GAGCTC	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	86
TaiI	ACGT	1 cut(s)	269
TaqI	TCGA	2 cut(s)	191, 201
TaqII	GACCGA	1 cut(s)	197
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	3 cut(s)	16, 24, 123
VpaK11BI	GGWCC	2 cut(s)	4, 243
XspI	CTAG	2 cut(s)	92, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.