Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007438

Physical Location & Seq

Genomic Coordinates Reverse (-)

21141462 .. 21144959

Gene Structure 3498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g17990.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGTAAGATGGTGTGAATTATTTAATTTGACAAGTGCGTGGCACAGGATGTCTGACCAAATGGCATTTTGGAATACAGTTAAGGTTAAAGTTGGCAAGAAAGTAGCATCTAGAGTAAACGCTAATGCTAGGAGCCATCTGTTGAGGAATCGAGTGAGTGATGGCTTTGTGATTATGGGTCAACGCAATTCAAATGCTCGTGTATTGCCAAGAAATTCTGTCAGGCCAACTTTGTCCACACTGAAAGCACATGAGTCGCAAAGGACTTTGAAATCCAAGGGTGCATCAGGTCCAAACAAATTAGTTTCTGCTGCTGCAACTTCATCCAAAACTGAAAAAGTCGTTATGGCTTTCCTTCCTGATAATGTTAAGCATGAAGCCACTCAGGTAGAGCTCCCATCTGAAGAAAACAGCAGACAGAGTGCTTCAACTATCATGTCCAGGAGAAAGTCAAATAGGAGGAGATCTTACACATCTCTACTGATGACCGGATCAAAGTTACTAGAGGAACGTGTTGAAGCTATGAAGGAGGAAGAACTACCAAGCATTGATGATGATTGCAATCAACTGGAAGTTTCCGATTATGTTGATGAGATCTATCAGTATTACTGGGTTTCTGAGGCACAGAATCCACCTCCAGAAAATTTGTTGTCGATTCAGGCAGACATTACTCCTCATATGCGAGGCATATTGGTCAACTGGTTAATTGAAGTACACCACAAATTTGAGTTAATGCAAGAAACTCTTTATCTCATGGTGACATTGCTCGACCAATATCTTTCTCAAGTCACAATTAAGAAGGATGACATGCAGTTAGTTGGTCTCACTGCACTCTTGTTGGCATCGAAGTACGAGGACTTTTGGCATCCGAGGGTCAAAGATTTAATTAGCATCTCAGCTGAGACATACACAAGAGCGCAGGTGCTTGGAATGGAGAAAGCTTTTCTTAAAAAGTTGAAGTTTCGTCTTAATGCACCTACTCCTTATGTCTTCATGTTAAGATTTCTCAAGGCTGCTCAGTCGGAAACAAAGCTTGAACATCTGGCATTCTACCTCATCGAGTTGTGCTTAGTTGAATATGAAGCTTTAAGGTTCAAGCCCTCGCTGCTGTGTGCAGCAGCGCTATATGTCGCAAGGTGCACCCTGCAGATTACTCCAGCTTGGACTCCACTGCTCTGCAAACACGCTCGCTATGAAGTATCCCAAATCAGAGACTGTGCAGAGTTGATCTTAAGATTTCACAAAGCTGCCAGAGTGGGACATTTGAAGGTCACATACGAGAAGTACTCTAGCCCTGATCTCAGTGGTGTTGCAGCGATAAAACCCTTGGACTCGCTTTCACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

449

Amino Acids

51.17

Weight (kDa)

9.21

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16330
fragaria_vesca	FvH4_3g14512 FvH4_3g14512 FvH4_3g14512 FvH4_3g14512 FvH4_3g14512 FvH4_3g14512
malus_domestica	MD05G1264400.v1.1 MD10G1212300.v1.1
prunus_persica	Prupe.4G130400_v2.0.a1 Prupe.4G130400_v2.0.a1 Prupe.4G130400_v2.0.a1
pyrus_communis	pycom05g21260 pycom10g17990
rosa_chinensis	RchiOBHm_Chr5g0023901
rosa_laevigata	RLG00000032747
rosa_multiflora	Rmu_sc0004175.1_g000014 Rmu_sc0005837.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055310
rosa_rugosa	Rorug05G0080200
rosa_samantha	Rh5AG170500 Rh5BG167600 Rh5CG183100 Rh5DG169700
rosa_wichuraiana	Rw5G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	910
Acc36I	ACCTGC	1 cut(s)	910
AclWI	GGATC	1 cut(s)	499
AcsI	RAATTY	3 cut(s)	214, 643, 722
AcuI	CTGAAG	1 cut(s)	423
AfaI	GTAC	3 cut(s)	714, 851, 1286
AfeI	AGCGCT	1 cut(s)	1122
AflII	CTTAAG	1 cut(s)	1231
AflIII	ACRYGT	1 cut(s)	511
AjnI	CCWGG	1 cut(s)	440
AluBI	AGCT	8 cut(s)	394, 521, 899, 941, 1033, 1085, 1160, 1247
AluI	AGCT	8 cut(s)	394, 521, 899, 941, 1033, 1085, 1160, 1247
Alw21I	GWGCWC	2 cut(s)	396, 1142
Alw26I	GTCTC	3 cut(s)	827, 896, 1206
Alw44I	GTGCAC	1 cut(s)	1138
AlwI	GGATC	1 cut(s)	499
AlwNI	CAGNNNCTG	1 cut(s)	1215
Aor51HI	AGCGCT	1 cut(s)	1122
AoxI	GGCC	1 cut(s)	224
ApaLI	GTGCAC	1 cut(s)	1138
ApeKI	GCWGC	8 cut(s)	311, 314, 1013, 1105, 1115, 1118, 1247, 1313
ApoI	RAATTY	3 cut(s)	214, 643, 722
AspLEI	GCGC	2 cut(s)	919, 1123
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	769
AvaII	GGWCC	1 cut(s)	290
BaeGI	GKGCMC	1 cut(s)	1142
BanII	GRGCYC	1 cut(s)	396
BarI	GAAGNNNNNNTAC	2 cut(s)	1259, 1291
BauI	CACGAG	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	982
Bbv12I	GWGCWC	2 cut(s)	396, 1142
BbvI	GCAGC	8 cut(s)	298, 301, 1000, 1092, 1127, 1130, 1234, 1325
BccI	CCATC	4 cut(s)	3, 144, 155, 406
BcgI	CGANNNNNNTGC	2 cut(s)	237, 271
BciT130I	CCWGG	1 cut(s)	442
BciVI	GTATCC	1 cut(s)	1210
BcoDI	GTCTC	3 cut(s)	827, 896, 1206
BfaI	CTAG	4 cut(s)	111, 129, 503, 1290
BfmI	CTRYAG	1 cut(s)	1145
BfoI	RGCGCY	1 cut(s)	1124
BfrI	CTTAAG	1 cut(s)	1231
BfuAI	ACCTGC	1 cut(s)	910
BfuI	GTATCC	1 cut(s)	1210
BglII	AGATCT	2 cut(s)	464, 594
BisI	GCNGC	8 cut(s)	312, 315, 1014, 1106, 1116, 1119, 1248, 1314
BlsI	GCNGC	8 cut(s)	313, 316, 1015, 1107, 1117, 1120, 1249, 1315
BmcAI	AGTACT	1 cut(s)	1286
Bme1390I	CCNGG	1 cut(s)	442
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	134
BmrFI	CCNGG	1 cut(s)	442
BmrI	ACTGGG	1 cut(s)	619
BmsI	GCATC	5 cut(s)	116, 293, 851, 874, 900
BmuI	ACTGGG	1 cut(s)	619
BpiI	GAAGAC	1 cut(s)	982
BplI	GAGNNNNNCTC	2 cut(s)	1271, 1303
BpmI	CTGGAG	2 cut(s)	621, 1140
BpuEI	CTTGAG	2 cut(s)	768, 992
BsaBI	GATNNNNATC	1 cut(s)	561
BsaI	GGTCTC	1 cut(s)	827
BsaJI	CCNNGG	3 cut(s)	276, 869, 1326
BsaWI	WCCGGW	1 cut(s)	488
Bse1I	ACTGG	3 cut(s)	573, 614, 704
Bse3DI	GCAATG	1 cut(s)	761
Bse8I	GATNNNNATC	1 cut(s)	561
BseBI	CCWGG	1 cut(s)	442
BseDI	CCNNGG	3 cut(s)	276, 869, 1326
BseGI	GGATG	4 cut(s)	54, 323, 808, 865
BseJI	GATNNNNATC	1 cut(s)	561
BseMI	GCAATG	1 cut(s)	761
BseMII	CTCAG	6 cut(s)	398, 609, 891, 909, 1031, 1315
BseNI	ACTGG	3 cut(s)	573, 614, 704
BseRI	GAGGAG	2 cut(s)	475, 663
BseSI	GKGCMC	1 cut(s)	1142
BseXI	GCAGC	8 cut(s)	298, 301, 1000, 1092, 1127, 1130, 1234, 1325
BsgI	GTGCAG	3 cut(s)	813, 1134, 1239
BshFI	GGCC	1 cut(s)	226
BsiHKAI	GWGCWC	2 cut(s)	396, 1142
BsiSI	CCGG	1 cut(s)	489
BslFI	GGGAC	1 cut(s)	1272
BsmAI	GTCTC	3 cut(s)	827, 896, 1206
BsmFI	GGGAC	1 cut(s)	1272
BsmI	GAATGC	1 cut(s)	1046
BsnI	GGCC	1 cut(s)	226
Bso31I	GGTCTC	1 cut(s)	827
Bsp1286I	GDGCHC	2 cut(s)	396, 1142
Bsp143I	GATC	5 cut(s)	464, 491, 594, 1227, 1297
BspANI	GGCC	1 cut(s)	226
BspCNI	CTCAG	6 cut(s)	397, 610, 892, 908, 1030, 1314
BspLI	GGNNCC	1 cut(s)	134
BspMAI	CTGCAG	1 cut(s)	1149
BspMI	ACCTGC	1 cut(s)	910
BspPI	GGATC	1 cut(s)	499
BspTI	CTTAAG	1 cut(s)	1231
BspTNI	GGTCTC	1 cut(s)	827
BsrDI	GCAATG	1 cut(s)	761
BsrI	ACTGG	3 cut(s)	573, 614, 704
BssECI	CCNNGG	3 cut(s)	276, 869, 1326
BssMI	GATC	5 cut(s)	464, 491, 594, 1227, 1297
BssSI	CACGAG	1 cut(s)	198
BssT1I	CCWWGG	2 cut(s)	276, 1326
Bst2BI	CACGAG	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	442
Bst4CI	ACNGT	2 cut(s)	79, 1217
BstAFI	CTTAAG	1 cut(s)	1231
BstC8I	GCNNGC	1 cut(s)	1189
BstDEI	CTNAG	7 cut(s)	384, 618, 895, 900, 1017, 1069, 1301
BstF5I	GGATG	4 cut(s)	54, 323, 808, 865
BstH2I	RGCGCY	1 cut(s)	1124
BstHHI	GCGC	2 cut(s)	919, 1123
BstKTI	GATC	5 cut(s)	467, 494, 597, 1230, 1300
BstMAI	GTCTC	3 cut(s)	827, 896, 1206
BstMBI	GATC	5 cut(s)	464, 491, 594, 1227, 1297
BstMWI	GCNNNNNNNGC	1 cut(s)	1105
BstNI	CCWGG	1 cut(s)	442
BstNSI	RCATGY	1 cut(s)	811
BstSCI	CCNGG	1 cut(s)	440
BstSFI	CTRYAG	1 cut(s)	1145
BstSLI	GKGCMC	1 cut(s)	1142
BstV1I	GCAGC	8 cut(s)	298, 301, 1000, 1092, 1127, 1130, 1234, 1325
BstV2I	GAAGAC	1 cut(s)	982
BstX2I	RGATCY	2 cut(s)	464, 594
BstYI	RGATCY	2 cut(s)	464, 594
BsuI	GTATCC	1 cut(s)	1210
BsuRI	GGCC	1 cut(s)	226
BtsCI	GGATG	4 cut(s)	54, 323, 808, 865
BtsI	GCAGTG	2 cut(s)	825, 1169
BtsIMutI	CAGTG	4 cut(s)	239, 825, 1169, 1309
BveI	ACCTGC	1 cut(s)	910
Cac8I	GCNNGC	1 cut(s)	1189
CaiI	CAGNNNCTG	1 cut(s)	1215
CfoI	GCGC	2 cut(s)	919, 1123
Cfr13I	GGNCC	1 cut(s)	290
Csp6I	GTAC	3 cut(s)	713, 850, 1285
CviAII	CATG	6 cut(s)	251, 374, 436, 754, 808, 994
CviQI	GTAC	3 cut(s)	713, 850, 1285
DdeI	CTNAG	7 cut(s)	384, 618, 895, 900, 1017, 1069, 1301
DpnI	GATC	5 cut(s)	466, 493, 596, 1229, 1299
DpnII	GATC	5 cut(s)	464, 491, 594, 1227, 1297
Ecl136II	GAGCTC	1 cut(s)	394
Eco130I	CCWWGG	2 cut(s)	276, 1326
Eco24I	GRGCYC	1 cut(s)	396
Eco31I	GGTCTC	1 cut(s)	827
Eco47I	GGWCC	1 cut(s)	290
Eco47III	AGCGCT	1 cut(s)	1122
Eco53kI	GAGCTC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	423
EcoICRI	GAGCTC	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	440
EcoT14I	CCWWGG	2 cut(s)	276, 1326
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	2 cut(s)	276, 1326
FaeI	CATG	6 cut(s)	254, 377, 439, 757, 811, 997
FalI	AAGNNNNNCTT	4 cut(s)	729, 761, 930, 962
FaqI	GGGAC	1 cut(s)	1272
FatI	CATG	6 cut(s)	250, 373, 435, 753, 807, 993
FauNDI	CATATG	1 cut(s)	678
Fnu4HI	GCNGC	8 cut(s)	312, 315, 1014, 1106, 1116, 1119, 1248, 1314
FokI	GGATG	4 cut(s)	61, 310, 815, 852
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	8 cut(s)	312, 315, 1014, 1106, 1116, 1119, 1248, 1314
FspBI	CTAG	4 cut(s)	111, 129, 503, 1290
GlaI	GCGC	2 cut(s)	918, 1122
GluI	GCNGC	8 cut(s)	312, 315, 1014, 1106, 1116, 1119, 1248, 1314
GsuI	CTGGAG	2 cut(s)	621, 1140
HaeII	RGCGCY	1 cut(s)	1124
HaeIII	GGCC	1 cut(s)	226
HapII	CCGG	1 cut(s)	489
HhaI	GCGC	2 cut(s)	919, 1123
Hin1II	CATG	6 cut(s)	254, 377, 439, 757, 811, 997
Hin6I	GCGC	2 cut(s)	917, 1121
HinP1I	GCGC	2 cut(s)	917, 1121
HincII	GTYRAC	2 cut(s)	182, 697
HindII	GTYRAC	2 cut(s)	182, 697
HindIII	AAGCTT	3 cut(s)	939, 1031, 1083
HinfI	GANTC	6 cut(s)	148, 254, 628, 655, 1165, 1331
HpaII	CCGG	1 cut(s)	489
HphI	GGTGA	1 cut(s)	769
Hpy166II	GTNNAC	6 cut(s)	118, 182, 237, 697, 715, 1140
Hpy188I	TCNGA	8 cut(s)	55, 403, 580, 619, 870, 1024, 1211, 1346
Hpy188III	TCNNGA	3 cut(s)	111, 359, 638
Hpy8I	GTNNAC	6 cut(s)	118, 182, 237, 697, 715, 1140
HpyAV	CCTTC	4 cut(s)	365, 520, 793, 1261
HpyCH4III	ACNGT	2 cut(s)	79, 1217
HpyCH4IV	ACGT	1 cut(s)	511
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1105
HpyF3I	CTNAG	7 cut(s)	384, 618, 895, 900, 1017, 1069, 1301
HpySE526I	ACGT	1 cut(s)	511
Hsp92II	CATG	6 cut(s)	254, 377, 439, 757, 811, 997
HspAI	GCGC	2 cut(s)	917, 1121
Kzo9I	GATC	5 cut(s)	464, 491, 594, 1227, 1297
LmnI	GCTCC	2 cut(s)	132, 399
Lsp1109I	GCAGC	8 cut(s)	298, 301, 1000, 1092, 1127, 1130, 1234, 1325
LweI	GCATC	5 cut(s)	116, 293, 851, 874, 900
MaeI	CTAG	4 cut(s)	111, 129, 503, 1290
MaeII	ACGT	1 cut(s)	511
MaeIII	GTNAC	4 cut(s)	498, 757, 787, 1270
MalI	GATC	5 cut(s)	466, 493, 596, 1229, 1299
MboI	GATC	5 cut(s)	464, 491, 594, 1227, 1297
MboII	GAAGA	3 cut(s)	416, 545, 982
MflI	RGATCY	2 cut(s)	464, 594
MhlI	GDGCHC	2 cut(s)	396, 1142
MlyI	GAGTC	3 cut(s)	263, 1159, 1325
MmeI	TCCRAC	1 cut(s)	1002
MspA1I	CMGCKG	1 cut(s)	899
MspCI	CTTAAG	1 cut(s)	1231
MspI	CCGG	1 cut(s)	489
MspR9I	CCNGG	1 cut(s)	442
Mva1269I	GAATGC	1 cut(s)	1046
MvaI	CCWGG	1 cut(s)	442
MwoI	GCNNNNNNNGC	1 cut(s)	1105
NdeI	CATATG	1 cut(s)	678
NdeII	GATC	5 cut(s)	464, 491, 594, 1227, 1297
NlaIII	CATG	6 cut(s)	254, 377, 439, 757, 811, 997
NlaIV	GGNNCC	1 cut(s)	134
NmuCI	GTSAC	3 cut(s)	757, 787, 1270
NspI	RCATGY	1 cut(s)	811
PaqCI	CACCTGC	1 cut(s)	910
PctI	GAATGC	1 cut(s)	1046
PfeI	GAWTC	3 cut(s)	148, 628, 655
PfoI	TCCNGGA	1 cut(s)	440
PkrI	GCNGC	8 cut(s)	313, 316, 1015, 1107, 1117, 1120, 1249, 1315
PleI	GAGTC	3 cut(s)	262, 1159, 1325
PpsI	GAGTC	3 cut(s)	262, 1159, 1325
Psp124BI	GAGCTC	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	440
PspGI	CCWGG	1 cut(s)	440
PspN4I	GGNNCC	1 cut(s)	134
PspPI	GGNCC	1 cut(s)	290
PstI	CTGCAG	1 cut(s)	1149
PstNI	CAGNNNCTG	1 cut(s)	1215
PsuI	RGATCY	2 cut(s)	464, 594
PvuII	CAGCTG	1 cut(s)	899
RsaI	GTAC	3 cut(s)	714, 851, 1286
RsaNI	GTAC	3 cut(s)	713, 850, 1285
SacI	GAGCTC	1 cut(s)	396
SatI	GCNGC	8 cut(s)	312, 315, 1014, 1106, 1116, 1119, 1248, 1314
Sau3AI	GATC	5 cut(s)	464, 491, 594, 1227, 1297
Sau96I	GGNCC	1 cut(s)	290
ScaI	AGTACT	1 cut(s)	1286
SchI	GAGTC	3 cut(s)	263, 1159, 1325
ScrFI	CCNGG	1 cut(s)	442
SduI	GDGCHC	2 cut(s)	396, 1142
SfaNI	GCATC	5 cut(s)	116, 293, 851, 874, 900
SfcI	CTRYAG	1 cut(s)	1145
SinI	GGWCC	1 cut(s)	290
SmlI	CTYRAG	3 cut(s)	783, 1007, 1231
SmoI	CTYRAG	3 cut(s)	783, 1007, 1231
SspMI	CTAG	4 cut(s)	111, 129, 503, 1290
SstI	GAGCTC	1 cut(s)	396
StyD4I	CCNGG	1 cut(s)	440
StyI	CCWWGG	2 cut(s)	276, 1326
TaaI	ACNGT	2 cut(s)	79, 1217
TaiI	ACGT	1 cut(s)	514
TaqI	TCGA	5 cut(s)	151, 653, 768, 845, 1059
TatI	WGTACW	2 cut(s)	712, 1284
TfiI	GAWTC	3 cut(s)	148, 628, 655
TscAI	CASTG	4 cut(s)	246, 832, 1176, 1309
TseFI	GTSAC	3 cut(s)	757, 787, 1270
TseI	GCWGC	8 cut(s)	311, 314, 1013, 1105, 1115, 1118, 1247, 1313
Tsp45I	GTSAC	3 cut(s)	757, 787, 1270
TspDTI	ATGAA	6 cut(s)	312, 390, 539, 982, 1095, 1209
TspRI	CASTG	4 cut(s)	246, 832, 1176, 1309
Vha464I	CTTAAG	1 cut(s)	1231
VneI	GTGCAC	1 cut(s)	1138
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	3 cut(s)	214, 643, 722
XbaI	TCTAGA	1 cut(s)	110
XceI	RCATGY	1 cut(s)	811
XspI	CTAG	4 cut(s)	111, 129, 503, 1290
ZrmI	AGTACT	1 cut(s)	1286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.