AT1G16730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017116
Physical Location & Seq
Reverse (-)
5726368 .. 5727406
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G16730.1

Sequence Viewer

Length: 609 bp
ATGGAAAATCATCACCGAATATCCGCCACAAAATACAACGGCGAAGCAGTGTCGGACGATGTGGGCCAGGGGAAGCTATATTCTCCAAACCACGCGATCAAAATCTCTCCAGAATCCGACGAAAACGTGGGCCAAGGGAACCTCTACTCTCCTGACCACGCGATCAAAATCGCAACGAACCCTGATTCCGTGGATTCCTCATCAGAGGAAGAAGAAGGAGAGAAGCAGAGGAAGACGATCATGTTGGGGCTGAAGAATCTTGCGGCGGTTAAGGATAAAGTGTTAGAAAAACTATCGGCTGCTTCGGTTCCATCTGAGTCGCTTGAAAACGCTAAACAGTTTTTGGAAGGAGCCATTAAGGATTTCGCCGGAGCGGCGCAGGGTATGACGAAAGACGCGTTGCACCGGATTAAAACTCAGCTCGCTGTTATTGTTCCGTCTGTTTCTCCTGCCGTCACCGAAAAGATAGTGGACGATGCTGAGAAAGAAGCCATTGACGGAGAGGAAGAAGATGAGAGCAAGTCAAAAGAAAGCTCCGGAAAGTTGCCGTTTGTTTCTCCGACATCTTCGTTTTTCAGCTCTCTCGCCAAACCTTTCTCCAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

21.69

Weight (kDa)

5.04

Isoelectric Point (pI)

37.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16730
fragaria_vesca FvH4_6g36360
malus_domestica MD04G1031600.v1.1
pyrus_communis pycom09g08720
rosa_laevigata RLG00000020343
rosa_multiflora Rmu_co8423113.1_g000001
rosa_roxburghii Rroxscaffold_2G00098830
rosa_rugosa Rorug02G0406100 Rorug02G0406100 Rorug02G0406100
rosa_samantha Rh2BG477800 Rh2DG486700
rosa_wichuraiana Rw2G037910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 374
AccII CGCG 3 cut(s) 95, 161, 398
AccIII TCCGGA 1 cut(s) 536
AciI CCGC 4 cut(s) 24, 263, 266, 374
AcuI CTGAAG 1 cut(s) 272
AflIII ACRYGT 1 cut(s) 396
AgsI TTSAA 1 cut(s) 326
AjnI CCWGG 1 cut(s) 66
AloI GAACNNNNNNTCC 2 cut(s) 170, 202
AluBI AGCT 5 cut(s) 76, 421, 534, 579, 604
AluI AGCT 5 cut(s) 76, 421, 534, 579, 604
Aor13HI TCCGGA 1 cut(s) 536
AoxI GGCC 2 cut(s) 64, 130
ApeKI GCWGC 1 cut(s) 299
AspLEI GCGC 1 cut(s) 379
AspS9I GGNCC 2 cut(s) 64, 130
AsuHPI GGTGA 2 cut(s) 5, 448
BbsI GAAGAC 1 cut(s) 239
BbvI GCAGC 1 cut(s) 286
BccI CCATC 1 cut(s) 319
BceAI ACGGC 3 cut(s) 55, 437, 532
BciT130I CCWGG 1 cut(s) 68
BglI GCCNNNNNGGC 1 cut(s) 374
BisI GCNGC 3 cut(s) 264, 300, 375
BlsI GCNGC 3 cut(s) 265, 301, 376
Bme1390I CCNGG 1 cut(s) 68
BmgT120I GGNCC 2 cut(s) 64, 130
BmiI GGNNCC 3 cut(s) 140, 309, 352
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 1 cut(s) 466
BpiI GAAGAC 1 cut(s) 239
BpmI CTGGAG 1 cut(s) 93
BsaBI GATNNNNATC 2 cut(s) 101, 167
BsaJI CCNNGG 3 cut(s) 67, 133, 189
BsaWI WCCGGW 2 cut(s) 405, 536
Bse8I GATNNNNATC 2 cut(s) 101, 167
BseAI TCCGGA 1 cut(s) 536
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 3 cut(s) 67, 133, 189
BseJI GATNNNNATC 2 cut(s) 101, 167
BseMII CTCAG 3 cut(s) 306, 431, 471
BseXI GCAGC 1 cut(s) 286
Bsh1236I CGCG 3 cut(s) 95, 161, 398
BshFI GGCC 2 cut(s) 66, 132
BsiSI CCGG 3 cut(s) 369, 406, 537
BsnI GGCC 2 cut(s) 66, 132
Bsp13I TCCGGA 1 cut(s) 536
Bsp143I GATC 3 cut(s) 96, 162, 237
BspACI CCGC 4 cut(s) 24, 263, 266, 374
BspANI GGCC 2 cut(s) 66, 132
BspCNI CTCAG 3 cut(s) 307, 430, 472
BspEI TCCGGA 1 cut(s) 536
BspFNI CGCG 3 cut(s) 95, 161, 398
BspLI GGNNCC 3 cut(s) 140, 309, 352
BsrBI CCGCTC 1 cut(s) 374
BssECI CCNNGG 3 cut(s) 67, 133, 189
BssMI GATC 3 cut(s) 96, 162, 237
BssT1I CCWWGG 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 3 cut(s) 315, 417, 480
BstDSI CCRYGG 1 cut(s) 189
BstFNI CGCG 3 cut(s) 95, 161, 398
BstHHI GCGC 1 cut(s) 379
BstKTI GATC 3 cut(s) 99, 165, 240
BstMBI GATC 3 cut(s) 96, 162, 237
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BstUI CGCG 3 cut(s) 95, 161, 398
BstV1I GCAGC 1 cut(s) 286
BstV2I GAAGAC 1 cut(s) 239
BsuRI GGCC 2 cut(s) 66, 132
BtgI CCRYGG 1 cut(s) 189
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 54
Cac8I GCNNGC 1 cut(s) 423
CfoI GCGC 1 cut(s) 379
Cfr13I GGNCC 2 cut(s) 64, 130
CseI GACGC 1 cut(s) 404
CviAII CATG 1 cut(s) 241
DdeI CTNAG 3 cut(s) 315, 417, 480
DpnI GATC 3 cut(s) 98, 164, 239
DpnII GATC 3 cut(s) 96, 162, 237
EciI GGCGGA 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 1 cut(s) 244
FaiI YATR 3 cut(s) 79, 242, 386
FatI CATG 1 cut(s) 240
Fnu4HI GCNGC 3 cut(s) 264, 300, 375
Fsp4HI GCNGC 3 cut(s) 264, 300, 375
GlaI GCGC 1 cut(s) 378
GluI GCNGC 3 cut(s) 264, 300, 375
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 2 cut(s) 66, 132
HapII CCGG 3 cut(s) 369, 406, 537
HgaI GACGC 1 cut(s) 404
HhaI GCGC 1 cut(s) 379
Hin1II CATG 1 cut(s) 244
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HindIII AAGCTT 1 cut(s) 602
HinfI GANTC 5 cut(s) 113, 185, 194, 256, 317
HpaII CCGG 3 cut(s) 369, 406, 537
HphI GGTGA 2 cut(s) 5, 448
Hpy166II GTNNAC 1 cut(s) 472
Hpy188I TCNGA 5 cut(s) 55, 118, 205, 316, 561
Hpy188III TCNNGA 3 cut(s) 110, 152, 537
Hpy8I GTNNAC 1 cut(s) 472
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 2 cut(s) 209, 341
HpyCH4III ACNGT 1 cut(s) 339
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 1 cut(s) 403
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpyF3I CTNAG 3 cut(s) 315, 417, 480
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 1 cut(s) 244
HspAI GCGC 1 cut(s) 377
Kpn2I TCCGGA 1 cut(s) 536
Kzo9I GATC 3 cut(s) 96, 162, 237
LmnI GCTCC 3 cut(s) 350, 371, 539
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 1 cut(s) 466
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 454
MalI GATC 3 cut(s) 98, 164, 239
MbiI CCGCTC 1 cut(s) 374
MboI GATC 3 cut(s) 96, 162, 237
MboII GAAGA 7 cut(s) 221, 224, 244, 265, 518, 521, 558
MluI ACGCGT 1 cut(s) 396
MlyI GAGTC 1 cut(s) 326
MmeI TCCRAC 3 cut(s) 33, 141, 584
MnlI CCTC 5 cut(s) 152, 199, 208, 222, 496
MroI TCCGGA 1 cut(s) 536
MseI TTAA 3 cut(s) 270, 357, 411
MspI CCGG 3 cut(s) 369, 406, 537
MspR9I CCNGG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 3 cut(s) 95, 161, 398
MwoI GCNNNNNNNGC 1 cut(s) 374
NdeII GATC 3 cut(s) 96, 162, 237
NlaIII CATG 1 cut(s) 244
NlaIV GGNNCC 3 cut(s) 140, 309, 352
NmuCI GTSAC 1 cut(s) 454
PcsI WCGNNNNNNNCGW 1 cut(s) 395
PfeI GAWTC 4 cut(s) 113, 185, 194, 256
PkrI GCNGC 3 cut(s) 265, 301, 376
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 3 cut(s) 140, 309, 352
PspPI GGNCC 2 cut(s) 64, 130
SaqAI TTAA 3 cut(s) 270, 357, 411
SatI GCNGC 3 cut(s) 264, 300, 375
Sau3AI GATC 3 cut(s) 96, 162, 237
Sau96I GGNCC 2 cut(s) 64, 130
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 1 cut(s) 68
SetI ASST 8 cut(s) 78, 129, 144, 423, 536, 581, 595, 606
SfaNI GCATC 1 cut(s) 466
SsiI CCGC 4 cut(s) 24, 263, 266, 374
StyD4I CCNGG 1 cut(s) 66
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 339
TaiI ACGT 1 cut(s) 129
TauI GCSGC 2 cut(s) 266, 377
TfiI GAWTC 4 cut(s) 113, 185, 194, 256
Tru1I TTAA 3 cut(s) 270, 357, 411
Tru9I TTAA 3 cut(s) 270, 357, 411
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 454
TspGWI ACGGA 3 cut(s) 178, 426, 513
TspRI CASTG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.