Rmu_co8423113.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8423113.1
OG0017116
Physical Location & Seq
Forward (+)
1 .. 828
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8423113.1_g000001.1.cds

Sequence Viewer

Length: 475 bp
acgaaagctcgagggtcagtcaaggagaactaaagtgatcagcaacaaagaaaaccacgaaagctccgtggacgtaggtcaaggagagttgtactccccagctcacgcaatcgaagtaagcagcaacgaagaaaaccgagacgaaaaatcgtcgtcggagcaaccaaggacgacgtcgaacgcggcggtgggagtggtggaagcaacaaaggaagtagcaatggacatgaagaggaacttgggggccgtcaaggataagatactggagaagcttgcggcacacgcacctgctgttcccgctgatgctttggacaacgtgcgccacttcttggagagtgttgtcaaggacgtgaccgacgctaccggggtggcccgtggtgtcaccacggatgcgttgcaccgtatcaaaactcaacttggtgacatgctgcccaacctctctccagacgccaccaagaaggtctcctccttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

16.94

Weight (kDa)

6.24

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16730
fragaria_vesca FvH4_6g36360
malus_domestica MD04G1031600.v1.1
pyrus_communis pycom09g08720
rosa_laevigata RLG00000020343
rosa_multiflora Rmu_co8423113.1_g000001
rosa_roxburghii Rroxscaffold_2G00098830
rosa_rugosa Rorug02G0406100 Rorug02G0406100 Rorug02G0406100
rosa_samantha Rh2BG477800 Rh2DG486700
rosa_wichuraiana Rw2G037910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 296
AatII GACGTC 1 cut(s) 177
Acc36I ACCTGC 1 cut(s) 296
AccB7I CCANNNNNTGG 1 cut(s) 329
AccII CGCG 1 cut(s) 183
AciI CCGC 4 cut(s) 183, 186, 276, 298
AcyI GRCGYC 2 cut(s) 174, 448
AfaI GTAC 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 329
AjiI CACGTC 1 cut(s) 350
AjuI GAANNNNNNNTTGG 2 cut(s) 222, 254
AluBI AGCT 4 cut(s) 8, 64, 102, 272
AluI AGCT 4 cut(s) 8, 64, 102, 272
Alw26I GTCTC 2 cut(s) 133, 467
Ama87I CYCGRG 1 cut(s) 9
AoxI GGCC 2 cut(s) 244, 370
ApeKI GCWGC 2 cut(s) 121, 428
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 2 cut(s) 244, 371
AsuC2I CCSGG 1 cut(s) 365
AsuHPI GGTGA 2 cut(s) 374, 432
AvaI CYCGRG 1 cut(s) 9
BbvI GCAGC 2 cut(s) 133, 415
BceAI ACGGC 1 cut(s) 231
BclI TGATCA 1 cut(s) 37
BcnI CCSGG 1 cut(s) 365
BcoDI GTCTC 2 cut(s) 133, 467
BfaI CTAG 1 cut(s) 473
BfuAI ACCTGC 1 cut(s) 296
BisI GCNGC 4 cut(s) 122, 184, 277, 429
BlsI GCNGC 4 cut(s) 123, 185, 278, 430
Bme1390I CCNGG 1 cut(s) 365
BmeT110I CYCGRG 1 cut(s) 9
BmgBI CACGTC 1 cut(s) 350
BmgT120I GGNCC 2 cut(s) 244, 371
BmiI GGNNCC 1 cut(s) 245
BmrFI CCNGG 1 cut(s) 365
BmsI GCATC 2 cut(s) 293, 380
BoxI GACNNNNGTC 1 cut(s) 76
BplI GAGNNNNNCTC 2 cut(s) 78, 110
BpmI CTGGAG 2 cut(s) 285, 427
BpuMI CCSGG 1 cut(s) 365
BsaHI GRCGYC 2 cut(s) 174, 448
BsaI GGTCTC 1 cut(s) 467
BsaJI CCNNGG 5 cut(s) 67, 165, 364, 374, 385
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse1I ACTGG 1 cut(s) 268
Bse3DI GCAATG 1 cut(s) 226
BseDI CCNNGG 5 cut(s) 67, 165, 364, 374, 385
BseGI GGATG 1 cut(s) 395
BseLI CCNNNNNNNGG 1 cut(s) 329
BseMI GCAATG 1 cut(s) 226
BseNI ACTGG 1 cut(s) 268
BseRI GAGGAG 1 cut(s) 455
BseXI GCAGC 2 cut(s) 133, 415
BseYI CCCAGC 1 cut(s) 98
Bsh1236I CGCG 1 cut(s) 183
BshFI GGCC 2 cut(s) 246, 372
BsiHKCI CYCGRG 1 cut(s) 9
BsiSI CCGG 1 cut(s) 364
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 2 cut(s) 133, 467
BsmBI CGTCTC 1 cut(s) 133
BsnI GGCC 2 cut(s) 246, 372
Bso31I GGTCTC 1 cut(s) 467
BsoBI CYCGRG 1 cut(s) 9
Bsp143I GATC 1 cut(s) 37
BspACI CCGC 4 cut(s) 183, 186, 276, 298
BspANI GGCC 2 cut(s) 246, 372
BspFNI CGCG 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 245
BspMI ACCTGC 1 cut(s) 296
BspTNI GGTCTC 1 cut(s) 467
BsrDI GCAATG 1 cut(s) 226
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 5 cut(s) 67, 165, 364, 374, 385
BssMI GATC 1 cut(s) 37
BssNI GRCGYC 2 cut(s) 174, 448
BssT1I CCWWGG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 402
Bst6I CTCTTC 1 cut(s) 225
BstACI GRCGYC 2 cut(s) 174, 448
BstC8I GCNNGC 1 cut(s) 274
BstDSI CCRYGG 3 cut(s) 67, 374, 385
BstF5I GGATG 1 cut(s) 395
BstFNI CGCG 1 cut(s) 183
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 1 cut(s) 40
BstMAI GTCTC 2 cut(s) 133, 467
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 2 cut(s) 282, 297
BstNSI RCATGY 1 cut(s) 428
BstPAI GACNNNNGTC 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 363
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 2 cut(s) 133, 415
BsuRI GGCC 2 cut(s) 246, 372
BtgI CCRYGG 3 cut(s) 67, 374, 385
BtrI CACGTC 1 cut(s) 350
BtsCI GGATG 1 cut(s) 395
BveI ACCTGC 1 cut(s) 296
Cac8I GCNNGC 1 cut(s) 274
CfoI GCGC 1 cut(s) 322
Cfr13I GGNCC 2 cut(s) 244, 371
CseI GACGC 2 cut(s) 366, 456
Csp6I GTAC 1 cut(s) 92
CviAII CATG 2 cut(s) 227, 425
CviJI RGCY 6 cut(s) 8, 64, 102, 246, 272, 372
CviKI_1 RGCY 6 cut(s) 8, 64, 102, 246, 272, 372
CviQI GTAC 1 cut(s) 92
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco130I CCWWGG 1 cut(s) 165
Eco31I GGTCTC 1 cut(s) 467
Eco88I CYCGRG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 165
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 2 cut(s) 230, 428
FaiI YATR 2 cut(s) 228, 426
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FatI CATG 2 cut(s) 226, 424
FauI CCCGC 1 cut(s) 305
FbaI TGATCA 1 cut(s) 37
Fnu4HI GCNGC 4 cut(s) 122, 184, 277, 429
FokI GGATG 1 cut(s) 402
Fsp4HI GCNGC 4 cut(s) 122, 184, 277, 429
FspBI CTAG 1 cut(s) 473
GlaI GCGC 1 cut(s) 321
GluI GCNGC 4 cut(s) 122, 184, 277, 429
GsaI CCCAGC 1 cut(s) 102
GsuI CTGGAG 2 cut(s) 285, 427
HaeIII GGCC 2 cut(s) 246, 372
HapII CCGG 1 cut(s) 364
HgaI GACGC 2 cut(s) 366, 456
HhaI GCGC 1 cut(s) 322
Hin1I GRCGYC 2 cut(s) 174, 448
Hin1II CATG 2 cut(s) 230, 428
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HindIII AAGCTT 1 cut(s) 270
HpaII CCGG 1 cut(s) 364
HphI GGTGA 2 cut(s) 374, 432
Hpy166II GTNNAC 1 cut(s) 71
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 1 cut(s) 444
Hpy8I GTNNAC 1 cut(s) 71
Hpy99I CGWCG 5 cut(s) 155, 158, 176, 179, 360
HpyAV CCTTC 1 cut(s) 452
HpyCH4III ACNGT 1 cut(s) 402
HpyCH4IV ACGT 4 cut(s) 73, 174, 316, 349
HpyCH4V TGCA 1 cut(s) 398
HpyF10VI GCNNNNNNNGC 2 cut(s) 282, 297
HpySE526I ACGT 4 cut(s) 73, 174, 316, 349
Hsp92I GRCGYC 2 cut(s) 174, 448
Hsp92II CATG 2 cut(s) 230, 428
HspAI GCGC 1 cut(s) 320
Ksp22I TGATCA 1 cut(s) 37
Kzo9I GATC 1 cut(s) 37
LmnI GCTCC 2 cut(s) 69, 158
LpnPI CCDG 5 cut(s) 112, 249, 301, 377, 457
Lsp1109I GCAGC 2 cut(s) 133, 415
LweI GCATC 2 cut(s) 293, 380
MaeI CTAG 1 cut(s) 473
MaeII ACGT 4 cut(s) 73, 174, 316, 349
MaeIII GTNAC 3 cut(s) 350, 380, 420
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 2 cut(s) 141, 242
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 3 cut(s) 5, 226, 447
MspA1I CMGCKG 1 cut(s) 300
MspI CCGG 1 cut(s) 364
MspR9I CCNGG 1 cut(s) 365
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 2 cut(s) 282, 297
NciI CCSGG 1 cut(s) 365
NdeII GATC 1 cut(s) 37
NlaIII CATG 2 cut(s) 230, 428
NlaIV GGNNCC 1 cut(s) 245
NmuCI GTSAC 3 cut(s) 350, 380, 420
NspI RCATGY 1 cut(s) 428
PaeR7I CTCGAG 1 cut(s) 9
PaqCI CACCTGC 1 cut(s) 296
PcsI WCGNNNNNNNCGW 1 cut(s) 64
PflFI GACNNNGTC 1 cut(s) 173
PflMI CCANNNNNTGG 1 cut(s) 329
PkrI GCNGC 4 cut(s) 123, 185, 278, 430
PshAI GACNNNNGTC 1 cut(s) 76
PspFI CCCAGC 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 245
PspPI GGNCC 2 cut(s) 244, 371
PspXI VCTCGAGB 1 cut(s) 9
PsyI GACNNNGTC 1 cut(s) 173
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
SatI GCNGC 4 cut(s) 122, 184, 277, 429
Sau3AI GATC 1 cut(s) 37
Sau96I GGNCC 2 cut(s) 244, 371
ScrFI CCNGG 1 cut(s) 365
SfaNI GCATC 2 cut(s) 293, 380
Sfr274I CTCGAG 1 cut(s) 9
SlaI CTCGAG 1 cut(s) 9
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
SsiI CCGC 4 cut(s) 183, 186, 276, 298
SspMI CTAG 1 cut(s) 473
StyD4I CCNGG 1 cut(s) 363
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 402
TaiI ACGT 4 cut(s) 76, 177, 319, 352
TaqI TCGA 3 cut(s) 10, 112, 177
TaqII GACCGA 1 cut(s) 369
TatI WGTACW 1 cut(s) 91
TauI GCSGC 2 cut(s) 186, 279
TseFI GTSAC 3 cut(s) 350, 380, 420
TseI GCWGC 2 cut(s) 121, 428
Tsp45I GTSAC 3 cut(s) 350, 380, 420
TspDTI ATGAA 1 cut(s) 243
TspGWI ACGGA 2 cut(s) 56, 402
Tth111I GACNNNGTC 1 cut(s) 173
Van91I CCANNNNNTGG 1 cut(s) 329
XceI RCATGY 1 cut(s) 428
XhoI CTCGAG 1 cut(s) 9
XspI CTAG 1 cut(s) 473
ZraI GACGTC 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.