Rroxscaffold_2G00098830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017116
Physical Location & Seq
Forward (+)
20275747 .. 20276959
1213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00098830.1

Sequence Viewer

Length: 603 bp
ATGATGGGCACAGATGAAAGCTCGAGGGTCAACCAAGGAGAACTATACTCCCCAGCTCACGCAATCAAAGTGATCAGCAACAAAGAAAACCATGAAAGCTCCGTGGACGTAGGTCAAGGTGAGTTGTACTCCCCGGCTCACGCAATCAAAGTAAGCAGCAAGGAAGAAAATCGAGACAAAAAATCGTGGTCGGAGCAACCAAGGACGACGTCGAATGTGGCGGTGGGAGTGGTGGAAGCAACAAAGGAAGTAGCAATGGACATGAAGAGGAACTTGGGGGCTGTCAAGGATAAGATACTGGAGAAGCTTGCGGCACACTCACCTGCTGTTCCCGCTGATGCTTTGGACAACGTGCGCCACTTCTTGGAGAGTGTTGTCAAGGACGTGACCGACGCGACCGGGGTGGCGCGTGGTGTCACCTCGGATGCGTTGCACCGTATCAAAACTCAACTTGGTGACATGCTGCCCAACCTCTCTCCAGACGCCACCAAGATGGTGGATGAAGCGGAAAAGGAATTATTAGCTACTAATGAAGATGGTGGCAGATGCAAAGATGAAAGAAACCACAAGGAAGGAAATCAAAAACAATCATCGAGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

21.8

Weight (kDa)

5.83

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16730
fragaria_vesca FvH4_6g36360
malus_domestica MD04G1031600.v1.1
pyrus_communis pycom09g08720
rosa_laevigata RLG00000020343
rosa_multiflora Rmu_co8423113.1_g000001
rosa_roxburghii Rroxscaffold_2G00098830
rosa_rugosa Rorug02G0406100 Rorug02G0406100 Rorug02G0406100
rosa_samantha Rh2BG477800 Rh2DG486700
rosa_wichuraiana Rw2G037910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 331
AatII GACGTC 1 cut(s) 212
Acc36I ACCTGC 1 cut(s) 331
AccB7I CCANNNNNTGG 1 cut(s) 364
AccII CGCG 2 cut(s) 395, 409
AciI CCGC 4 cut(s) 221, 311, 333, 506
AcyI GRCGYC 2 cut(s) 209, 483
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 364
AjiI CACGTC 1 cut(s) 385
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AluBI AGCT 5 cut(s) 21, 56, 99, 307, 524
AluI AGCT 5 cut(s) 21, 56, 99, 307, 524
Alw26I GTCTC 1 cut(s) 168
Ama87I CYCGRG 1 cut(s) 22
ApeKI GCWGC 2 cut(s) 156, 463
AspLEI GCGC 2 cut(s) 357, 409
AsuC2I CCSGG 2 cut(s) 134, 400
AsuHPI GGTGA 4 cut(s) 131, 312, 409, 467
AvaI CYCGRG 1 cut(s) 22
BaeGI GKGCMC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 168, 450
BccI CCATC 2 cut(s) 487, 530
BclI TGATCA 1 cut(s) 72
BcnI CCSGG 2 cut(s) 134, 400
BcoDI GTCTC 1 cut(s) 168
BfuAI ACCTGC 1 cut(s) 331
BisI GCNGC 3 cut(s) 157, 312, 464
BlsI GCNGC 3 cut(s) 158, 313, 465
Bme1390I CCNGG 2 cut(s) 134, 400
BmeT110I CYCGRG 1 cut(s) 22
BmgBI CACGTC 1 cut(s) 385
BmrFI CCNGG 2 cut(s) 134, 400
BmsI GCATC 3 cut(s) 328, 415, 536
BoxI GACNNNNGTC 1 cut(s) 111
BplI GAGNNNNNCTC 2 cut(s) 113, 145
BpmI CTGGAG 2 cut(s) 320, 462
BpuMI CCSGG 2 cut(s) 134, 400
BsaHI GRCGYC 2 cut(s) 209, 483
BsaJI CCNNGG 6 cut(s) 34, 102, 132, 200, 399, 420
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 303
Bse3DI GCAATG 1 cut(s) 261
BseDI CCNNGG 6 cut(s) 34, 102, 132, 200, 399, 420
BseGI GGATG 2 cut(s) 430, 505
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMI GCAATG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 303
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 2 cut(s) 168, 450
BseYI CCCAGC 1 cut(s) 52
Bsh1236I CGCG 2 cut(s) 395, 409
Bsh1285I CGRYCG 1 cut(s) 399
BsiEI CGRYCG 1 cut(s) 399
BsiHKCI CYCGRG 1 cut(s) 22
BsiSI CCGG 2 cut(s) 134, 399
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 1 cut(s) 168
BsoBI CYCGRG 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 1 cut(s) 72
BspACI CCGC 4 cut(s) 221, 311, 333, 506
BspFNI CGCG 2 cut(s) 395, 409
BspMI ACCTGC 1 cut(s) 331
BsrDI GCAATG 1 cut(s) 261
BsrI ACTGG 1 cut(s) 303
BssECI CCNNGG 6 cut(s) 34, 102, 132, 200, 399, 420
BssMI GATC 1 cut(s) 72
BssNI GRCGYC 2 cut(s) 209, 483
BssT1I CCWWGG 2 cut(s) 34, 200
Bst4CI ACNGT 1 cut(s) 437
Bst6I CTCTTC 1 cut(s) 260
BstACI GRCGYC 2 cut(s) 209, 483
BstC8I GCNNGC 1 cut(s) 309
BstDSI CCRYGG 1 cut(s) 102
BstF5I GGATG 2 cut(s) 430, 505
BstFNI CGCG 2 cut(s) 395, 409
BstHHI GCGC 2 cut(s) 357, 409
BstKTI GATC 1 cut(s) 75
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 1 cut(s) 72
BstMCI CGRYCG 1 cut(s) 399
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstNSI RCATGY 1 cut(s) 463
BstPAI GACNNNNGTC 1 cut(s) 111
BstSCI CCNGG 2 cut(s) 132, 398
BstSLI GKGCMC 1 cut(s) 11
BstUI CGCG 2 cut(s) 395, 409
BstV1I GCAGC 2 cut(s) 168, 450
BstXI CCANNNNNNTGG 2 cut(s) 493, 496
BtgI CCRYGG 1 cut(s) 102
BtrI CACGTC 1 cut(s) 385
BtsCI GGATG 2 cut(s) 430, 505
BveI ACCTGC 1 cut(s) 331
Cac8I GCNNGC 1 cut(s) 309
CfoI GCGC 2 cut(s) 357, 409
CseI GACGC 2 cut(s) 401, 491
Csp6I GTAC 1 cut(s) 127
CviAII CATG 3 cut(s) 92, 262, 460
CviJI RGCY 8 cut(s) 21, 56, 99, 137, 281, 307, 524, 598
CviKI_1 RGCY 8 cut(s) 21, 56, 99, 137, 281, 307, 524, 598
CviQI GTAC 1 cut(s) 127
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Eco130I CCWWGG 2 cut(s) 34, 200
Eco88I CYCGRG 1 cut(s) 22
EcoT14I CCWWGG 2 cut(s) 34, 200
ErhI CCWWGG 2 cut(s) 34, 200
FaeI CATG 3 cut(s) 95, 265, 463
FaiI YATR 4 cut(s) 46, 93, 263, 461
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FatI CATG 3 cut(s) 91, 261, 459
FauI CCCGC 1 cut(s) 340
FbaI TGATCA 1 cut(s) 72
Fnu4HI GCNGC 3 cut(s) 157, 312, 464
FokI GGATG 2 cut(s) 437, 512
Fsp4HI GCNGC 3 cut(s) 157, 312, 464
GlaI GCGC 2 cut(s) 356, 408
GluI GCNGC 3 cut(s) 157, 312, 464
GsaI CCCAGC 1 cut(s) 56
GsuI CTGGAG 2 cut(s) 320, 462
HapII CCGG 2 cut(s) 134, 399
HgaI GACGC 2 cut(s) 401, 491
HhaI GCGC 2 cut(s) 357, 409
Hin1I GRCGYC 2 cut(s) 209, 483
Hin1II CATG 3 cut(s) 95, 265, 463
Hin6I GCGC 2 cut(s) 355, 407
HinP1I GCGC 2 cut(s) 355, 407
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HindIII AAGCTT 1 cut(s) 305
HpaII CCGG 2 cut(s) 134, 399
HphI GGTGA 4 cut(s) 131, 312, 409, 467
Hpy166II GTNNAC 2 cut(s) 31, 106
Hpy188I TCNGA 2 cut(s) 193, 424
Hpy188III TCNNGA 2 cut(s) 173, 479
Hpy8I GTNNAC 2 cut(s) 31, 106
Hpy99I CGWCG 3 cut(s) 211, 214, 395
HpyAV CCTTC 1 cut(s) 566
HpyCH4III ACNGT 1 cut(s) 437
HpyCH4IV ACGT 4 cut(s) 108, 209, 351, 384
HpyCH4V TGCA 2 cut(s) 433, 549
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpySE526I ACGT 4 cut(s) 108, 209, 351, 384
Hsp92I GRCGYC 2 cut(s) 209, 483
Hsp92II CATG 3 cut(s) 95, 265, 463
HspAI GCGC 2 cut(s) 355, 407
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 1 cut(s) 72
LmnI GCTCC 2 cut(s) 104, 193
LpnPI CCDG 6 cut(s) 66, 147, 284, 336, 412, 492
Lsp1109I GCAGC 2 cut(s) 168, 450
LweI GCATC 3 cut(s) 328, 415, 536
MaeII ACGT 4 cut(s) 108, 209, 351, 384
MaeIII GTNAC 3 cut(s) 385, 415, 455
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
MboII GAAGA 3 cut(s) 176, 277, 545
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 1 cut(s) 515
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 5 cut(s) 18, 261, 430, 482, 588
MslI CAYNNNNRTG 1 cut(s) 491
MspA1I CMGCKG 1 cut(s) 335
MspI CCGG 2 cut(s) 134, 399
MspR9I CCNGG 2 cut(s) 134, 400
MvnI CGCG 2 cut(s) 395, 409
MwoI GCNNNNNNNGC 1 cut(s) 332
NciI CCSGG 2 cut(s) 134, 400
NdeII GATC 1 cut(s) 72
NlaIII CATG 3 cut(s) 95, 265, 463
NmuCI GTSAC 3 cut(s) 385, 415, 455
NspI RCATGY 1 cut(s) 463
PaeR7I CTCGAG 1 cut(s) 22
PaqCI CACCTGC 1 cut(s) 331
PflFI GACNNNGTC 1 cut(s) 208
PflMI CCANNNNNTGG 1 cut(s) 364
PkrI GCNGC 3 cut(s) 158, 313, 465
PshAI GACNNNNGTC 1 cut(s) 111
PspFI CCCAGC 1 cut(s) 52
PspXI VCTCGAGB 1 cut(s) 22
PsyI GACNNNGTC 1 cut(s) 208
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
RseI CAYNNNNRTG 1 cut(s) 491
SatI GCNGC 3 cut(s) 157, 312, 464
Sau3AI GATC 1 cut(s) 72
ScrFI CCNGG 2 cut(s) 134, 400
SduI GDGCHC 1 cut(s) 11
SfaNI GCATC 3 cut(s) 328, 415, 536
Sfr274I CTCGAG 1 cut(s) 22
SlaI CTCGAG 1 cut(s) 22
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
Sse9I AATT 1 cut(s) 515
SsiI CCGC 4 cut(s) 221, 311, 333, 506
StyD4I CCNGG 2 cut(s) 132, 398
StyI CCWWGG 2 cut(s) 34, 200
TaaI ACNGT 1 cut(s) 437
TaiI ACGT 4 cut(s) 111, 212, 354, 387
TaqI TCGA 4 cut(s) 23, 172, 212, 593
TaqII GACCGA 1 cut(s) 404
TasI AATT 1 cut(s) 515
TatI WGTACW 1 cut(s) 126
TauI GCSGC 1 cut(s) 314
TseFI GTSAC 3 cut(s) 385, 415, 455
TseI GCWGC 2 cut(s) 156, 463
Tsp45I GTSAC 3 cut(s) 385, 415, 455
TspDTI ATGAA 6 cut(s) 30, 108, 278, 516, 546, 570
TspGWI ACGGA 1 cut(s) 91
Tth111I GACNNNGTC 1 cut(s) 208
Van91I CCANNNNNTGG 1 cut(s) 364
XceI RCATGY 1 cut(s) 463
XcmI CCANNNNNNNNNTGG 1 cut(s) 493
XhoI CTCGAG 1 cut(s) 22
ZraI GACGTC 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.