FvH4_6g36360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017116
Physical Location & Seq
Reverse (-)
28598859 .. 28600487
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36360.t1

Sequence Viewer

Length: 582 bp
ATGGGCAAATATGAAAGCTCGAGGGTCGGTCAAGGAGAACTATACTCCCCAGCTCACGCAACCAAAGTGAACATCAGCAACAAAGAAAAACAAGACAGCTCCATGGACGTAGGTCAAGGAGAGTTGTACTCCCCGGCTCACGCAATCAAAGTGAGCAGCAACGAAGAGAATCAACCAAAGACGACGTCGAATGCGGCGGTGGGAGTGGTGGAAGCAACAAAGGAAGTGGCTATGGACGTGAAGAGGAACTTGGGGGCCGTTAAGGATATGATACTTGAGAAGCTTGGGGCACACGCACCTGCTGTTCCTGCTGATGCTTTGGACAACGTGGGGCACTTCTTGGAGAGCGTTGTCAAGGACGTGACCGACACGACTGGGGCGGAGCATGGTGTCACCATGGAGGTGTTGCACCGCATCAAAACTCAACTTGGTGACATGCTACCCAACCTCTCTCCAGACGCCACCAAGAAGATGGTGGATGAAGTACAGAAGGAATTATCAGCTACTAATGAAGAGGGTGGTAGATGCAAAGCTGAAAGAAATCAAGAGCAAGGACATCTAAAACAATCATCGAGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

20.79

Weight (kDa)

5.66

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16730
fragaria_vesca FvH4_6g36360
malus_domestica MD04G1031600.v1.1
pyrus_communis pycom09g08720
rosa_laevigata RLG00000020343
rosa_multiflora Rmu_co8423113.1_g000001
rosa_roxburghii Rroxscaffold_2G00098830
rosa_rugosa Rorug02G0406100 Rorug02G0406100 Rorug02G0406100
rosa_samantha Rh2BG477800 Rh2DG486700
rosa_wichuraiana Rw2G037910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 307
AatII GACGTC 1 cut(s) 188
Acc36I ACCTGC 1 cut(s) 307
AciI CCGC 4 cut(s) 194, 197, 380, 412
AcyI GRCGYC 2 cut(s) 185, 459
AfaI GTAC 2 cut(s) 128, 486
AjiI CACGTC 2 cut(s) 238, 361
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 6 cut(s) 18, 53, 99, 283, 503, 533
AluI AGCT 6 cut(s) 18, 53, 99, 283, 503, 533
Ama87I CYCGRG 1 cut(s) 19
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 156
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AspS9I GGNCC 1 cut(s) 255
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 2 cut(s) 385, 443
AvaI CYCGRG 1 cut(s) 19
BaeGI GKGCMC 2 cut(s) 292, 336
BbvI GCAGC 1 cut(s) 168
BccI CCATC 1 cut(s) 466
BceAI ACGGC 1 cut(s) 242
BcnI CCSGG 1 cut(s) 134
BfuAI ACCTGC 1 cut(s) 307
BisI GCNGC 2 cut(s) 157, 195
BlsI GCNGC 2 cut(s) 158, 196
Bme1390I CCNGG 1 cut(s) 134
BmeT110I CYCGRG 1 cut(s) 19
BmgBI CACGTC 2 cut(s) 238, 361
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 134
BmrI ACTGGG 1 cut(s) 384
BmsI GCATC 3 cut(s) 304, 423, 515
BmuI ACTGGG 1 cut(s) 384
BoxI GACNNNNGTC 1 cut(s) 111
BplI GAGNNNNNCTC 2 cut(s) 113, 145
BpmI CTGGAG 1 cut(s) 438
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 1 cut(s) 134
BsaHI GRCGYC 2 cut(s) 185, 459
BsaJI CCNNGG 3 cut(s) 102, 132, 396
Bse1I ACTGG 1 cut(s) 379
BseDI CCNNGG 3 cut(s) 102, 132, 396
BseGI GGATG 1 cut(s) 484
BseNI ACTGG 1 cut(s) 379
BseSI GKGCMC 2 cut(s) 292, 336
BseXI GCAGC 1 cut(s) 168
BseYI CCCAGC 1 cut(s) 49
BshFI GGCC 1 cut(s) 257
BsiHKCI CYCGRG 1 cut(s) 19
BsiSI CCGG 1 cut(s) 134
BsmI GAATGC 1 cut(s) 196
BsnI GGCC 1 cut(s) 257
BsoBI CYCGRG 1 cut(s) 19
Bsp1286I GDGCHC 2 cut(s) 292, 336
Bsp19I CCATGG 2 cut(s) 102, 396
BspACI CCGC 4 cut(s) 194, 197, 380, 412
BspANI GGCC 1 cut(s) 257
BspLI GGNNCC 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 307
BsrI ACTGG 1 cut(s) 379
BssECI CCNNGG 3 cut(s) 102, 132, 396
BssNI GRCGYC 2 cut(s) 185, 459
BssT1I CCWWGG 2 cut(s) 102, 396
Bst6I CTCTTC 3 cut(s) 159, 236, 507
BstACI GRCGYC 2 cut(s) 185, 459
BstDSI CCRYGG 2 cut(s) 102, 396
BstF5I GGATG 1 cut(s) 484
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstNSI RCATGY 1 cut(s) 439
BstPAI GACNNNNGTC 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 132
BstSLI GKGCMC 2 cut(s) 292, 336
BstV1I GCAGC 1 cut(s) 168
BstXI CCANNNNNNTGG 1 cut(s) 472
BsuRI GGCC 1 cut(s) 257
BtgI CCRYGG 2 cut(s) 102, 396
BtrI CACGTC 2 cut(s) 238, 361
BtsCI GGATG 1 cut(s) 484
BveI ACCTGC 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 255
CseI GACGC 1 cut(s) 467
Csp6I GTAC 2 cut(s) 127, 485
CspCI CAANNNNNGTGG 2 cut(s) 207, 242
CviAII CATG 4 cut(s) 103, 386, 397, 436
CviQI GTAC 2 cut(s) 127, 485
Eam1104I CTCTTC 3 cut(s) 159, 236, 507
EarI CTCTTC 3 cut(s) 159, 236, 507
EciI GGCGGA 1 cut(s) 395
Eco130I CCWWGG 2 cut(s) 102, 396
Eco88I CYCGRG 1 cut(s) 19
EcoT14I CCWWGG 2 cut(s) 102, 396
ErhI CCWWGG 2 cut(s) 102, 396
FaeI CATG 4 cut(s) 106, 389, 400, 439
FaiI YATR 8 cut(s) 12, 43, 104, 233, 269, 387, 398, 437
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FatI CATG 4 cut(s) 102, 385, 396, 435
Fnu4HI GCNGC 2 cut(s) 157, 195
FokI GGATG 1 cut(s) 491
Fsp4HI GCNGC 2 cut(s) 157, 195
GluI GCNGC 2 cut(s) 157, 195
GsaI CCCAGC 1 cut(s) 53
GsuI CTGGAG 1 cut(s) 438
HaeIII GGCC 1 cut(s) 257
HapII CCGG 1 cut(s) 134
HgaI GACGC 1 cut(s) 467
Hin1I GRCGYC 2 cut(s) 185, 459
Hin1II CATG 4 cut(s) 106, 389, 400, 439
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 1 cut(s) 169
HpaII CCGG 1 cut(s) 134
HphI GGTGA 2 cut(s) 385, 443
Hpy166II GTNNAC 1 cut(s) 70
Hpy188III TCNNGA 2 cut(s) 455, 545
Hpy8I GTNNAC 1 cut(s) 70
Hpy99I CGWCG 2 cut(s) 187, 190
HpyAV CCTTC 1 cut(s) 484
HpyCH4IV ACGT 5 cut(s) 108, 185, 237, 327, 360
HpyCH4V TGCA 2 cut(s) 409, 528
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpySE526I ACGT 5 cut(s) 108, 185, 237, 327, 360
Hsp92I GRCGYC 2 cut(s) 185, 459
Hsp92II CATG 4 cut(s) 106, 389, 400, 439
LmnI GCTCC 2 cut(s) 104, 382
LpnPI CCDG 6 cut(s) 63, 147, 312, 321, 360, 468
Lsp1109I GCAGC 1 cut(s) 168
LweI GCATC 3 cut(s) 304, 423, 515
MaeII ACGT 5 cut(s) 108, 185, 237, 327, 360
MaeIII GTNAC 3 cut(s) 361, 391, 431
MboII GAAGA 4 cut(s) 176, 253, 481, 524
MhlI GDGCHC 2 cut(s) 292, 336
MluCI AATT 1 cut(s) 494
MnlI CCTC 6 cut(s) 15, 237, 394, 458, 508, 567
MseI TTAA 1 cut(s) 261
MslI CAYNNNNRTG 1 cut(s) 401
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 134
Mva1269I GAATGC 1 cut(s) 196
MwoI GCNNNNNNNGC 1 cut(s) 308
NciI CCSGG 1 cut(s) 134
NcoI CCATGG 2 cut(s) 102, 396
NlaIII CATG 4 cut(s) 106, 389, 400, 439
NlaIV GGNNCC 1 cut(s) 256
NmuCI GTSAC 3 cut(s) 361, 391, 431
NspI RCATGY 1 cut(s) 439
PaeR7I CTCGAG 1 cut(s) 19
PaqCI CACCTGC 1 cut(s) 307
PctI GAATGC 1 cut(s) 196
PfeI GAWTC 1 cut(s) 169
PflFI GACNNNGTC 1 cut(s) 184
PkrI GCNGC 2 cut(s) 158, 196
PshAI GACNNNNGTC 1 cut(s) 111
PspFI CCCAGC 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 255
PspXI VCTCGAGB 1 cut(s) 19
PsyI GACNNNGTC 1 cut(s) 184
RsaI GTAC 2 cut(s) 128, 486
RsaNI GTAC 2 cut(s) 127, 485
RseI CAYNNNNRTG 1 cut(s) 401
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 2 cut(s) 157, 195
Sau96I GGNCC 1 cut(s) 255
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 2 cut(s) 292, 336
SfaNI GCATC 3 cut(s) 304, 423, 515
Sfr274I CTCGAG 1 cut(s) 19
SlaI CTCGAG 1 cut(s) 19
SmiMI CAYNNNNRTG 1 cut(s) 401
SmlI CTYRAG 2 cut(s) 19, 275
SmoI CTYRAG 2 cut(s) 19, 275
Sse9I AATT 1 cut(s) 494
SsiI CCGC 4 cut(s) 194, 197, 380, 412
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 2 cut(s) 102, 396
TaiI ACGT 5 cut(s) 111, 188, 240, 330, 363
TaqI TCGA 3 cut(s) 20, 188, 572
TaqII GACCGA 2 cut(s) 17, 380
TasI AATT 1 cut(s) 494
TatI WGTACW 2 cut(s) 126, 484
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TseFI GTSAC 3 cut(s) 361, 391, 431
TseI GCWGC 1 cut(s) 156
Tsp45I GTSAC 3 cut(s) 361, 391, 431
TspDTI ATGAA 3 cut(s) 27, 495, 525
Tth111I GACNNNGTC 1 cut(s) 184
XceI RCATGY 1 cut(s) 439
XcmI CCANNNNNNNNNTGG 2 cut(s) 469, 472
XhoI CTCGAG 1 cut(s) 19
ZraI GACGTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.