pycom09g08720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0017116
Physical Location & Seq
Forward (+)
6823663 .. 6824971
1309 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g08720.2

Sequence Viewer

Length: 708 bp
ATGCAACCTCATCTCTGTCAGCCTTCTCTTCTCTCTAAACACAGTGAGTATAATAAGGTGAAAAAACCTAAACCAAATTCATGGAAGAGAGTAGAAAGAAGCAAAGATGGGTCAAAGGGATTAAGTGACGATGATGATGTGGGTCAAGGAGAACTGTACTCTCCTGCTTATTCCATCAACGTGAGAAACAACAAAGCAAACCTTGATGCTAAAGTGGGTCAAGGAGAATTGTACTCTCCTTCCCATGCCATCAAAGTGAGCAATAACAAAGCAAACCAAGAACCATCGTCGCTGCTTCCGTCGTCGATGGGATTGGGTGTGGCTGCAGACCATATAAGGTGGAACTTGGAGGCCATCAAGGACAGACTGTTGGAGAAGCTGGCAGCTGCTGCTGTTCCTGCTGATGCTTTGGACAGTGCACGCCACTTCTTAGAGAGTGTCGTCAAAGATGTCACTGGGGCTGCGCATGGAATCACCAAGGATGCCTTGCACCGGATCAGAACTCATCTTGTTGACATTCTACCCTCCCTGTCTCCTAAAACCACTAACAAGATGGTGGATGAGGCAGAAAGGGAAGCTAATAATATTGGTGGAGGTCGTGGGAGAGAAGATGAGAGGAAGAACGAGGAAGGACGCCATAGAAGTATATGCCTCGCCCACTTCCTCTGTGTTTTCTACATCAAGGCTTTGATGCCTCTTTGTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

25.88

Weight (kDa)

8.8

Isoelectric Point (pI)

45.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16730
fragaria_vesca FvH4_6g36360
malus_domestica MD04G1031600.v1.1
pyrus_communis pycom09g08720
rosa_laevigata RLG00000020343
rosa_multiflora Rmu_co8423113.1_g000001
rosa_roxburghii Rroxscaffold_2G00098830
rosa_rugosa Rorug02G0406100 Rorug02G0406100 Rorug02G0406100
rosa_samantha Rh2BG477800 Rh2DG486700
rosa_wichuraiana Rw2G037910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 465
AclWI GGATC 1 cut(s) 503
AcsI RAATTY 1 cut(s) 76
AcyI GRCGYC 1 cut(s) 634
AfaI GTAC 2 cut(s) 158, 233
AfiI CCNNNNNNNGG 1 cut(s) 492
AluBI AGCT 3 cut(s) 379, 386, 578
AluI AGCT 3 cut(s) 379, 386, 578
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 1 cut(s) 537
Alw44I GTGCAC 1 cut(s) 417
AlwI GGATC 1 cut(s) 503
AlwNI CAGNNNCTG 1 cut(s) 389
AoxI GGCC 1 cut(s) 351
ApaLI GTGCAC 1 cut(s) 417
ApeKI GCWGC 6 cut(s) 292, 323, 383, 386, 389, 461
ApoI RAATTY 1 cut(s) 76
AspLEI GCGC 1 cut(s) 466
AsuHPI GGTGA 2 cut(s) 70, 466
BaeGI GKGCMC 1 cut(s) 421
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 6 cut(s) 279, 310, 373, 376, 395, 448
BccI CCATC 7 cut(s) 101, 182, 257, 292, 301, 362, 547
BcoDI GTCTC 1 cut(s) 537
BfmI CTRYAG 1 cut(s) 324
BisI GCNGC 6 cut(s) 293, 324, 384, 387, 390, 462
BlsI GCNGC 6 cut(s) 294, 325, 385, 388, 391, 463
BmrI ACTGGG 1 cut(s) 465
BmsI GCATC 4 cut(s) 196, 394, 472, 681
BmuI ACTGGG 1 cut(s) 465
BsaHI GRCGYC 1 cut(s) 634
BsaJI CCNNGG 1 cut(s) 477
BsaWI WCCGGW 1 cut(s) 492
Bsc4I CCNNNNNNNGG 1 cut(s) 492
Bse1I ACTGG 1 cut(s) 460
BseDI CCNNGG 1 cut(s) 477
BseGI GGATG 2 cut(s) 487, 565
BseLI CCNNNNNNNGG 1 cut(s) 492
BseNI ACTGG 1 cut(s) 460
BseSI GKGCMC 1 cut(s) 421
BseXI GCAGC 6 cut(s) 279, 310, 373, 376, 395, 448
BshFI GGCC 1 cut(s) 353
BsiHKAI GWGCWC 1 cut(s) 421
BsiSI CCGG 1 cut(s) 493
BslI CCNNNNNNNGG 1 cut(s) 492
BsmAI GTCTC 1 cut(s) 537
BsnI GGCC 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 1 cut(s) 495
BspANI GGCC 1 cut(s) 353
BspMAI CTGCAG 1 cut(s) 328
BspPI GGATC 1 cut(s) 503
BsrI ACTGG 1 cut(s) 460
BssECI CCNNGG 1 cut(s) 477
BssMI GATC 1 cut(s) 495
BssNI GRCGYC 1 cut(s) 634
BssT1I CCWWGG 1 cut(s) 477
Bst4CI ACNGT 4 cut(s) 44, 156, 369, 416
Bst6I CTCTTC 2 cut(s) 33, 80
BstACI GRCGYC 1 cut(s) 634
BstAPI GCANNNNNTGC 1 cut(s) 389
BstC8I GCNNGC 2 cut(s) 381, 421
BstDEI CTNAG 1 cut(s) 430
BstF5I GGATG 2 cut(s) 487, 565
BstHHI GCGC 1 cut(s) 466
BstKTI GATC 1 cut(s) 498
BstMAI GTCTC 1 cut(s) 537
BstMBI GATC 1 cut(s) 495
BstMWI GCNNNNNNNGC 2 cut(s) 389, 398
BstSFI CTRYAG 1 cut(s) 324
BstSLI GKGCMC 1 cut(s) 421
BstV1I GCAGC 6 cut(s) 279, 310, 373, 376, 395, 448
BstXI CCANNNNNNTGG 1 cut(s) 81
BsuRI GGCC 1 cut(s) 353
BtsCI GGATG 2 cut(s) 487, 565
BtsIMutI CAGTG 3 cut(s) 49, 421, 453
Cac8I GCNNGC 2 cut(s) 381, 421
CaiI CAGNNNCTG 1 cut(s) 389
CfoI GCGC 1 cut(s) 466
CseI GACGC 1 cut(s) 642
Csp6I GTAC 2 cut(s) 157, 232
CviAII CATG 3 cut(s) 81, 245, 467
CviJI RGCY 8 cut(s) 22, 323, 353, 379, 386, 461, 578, 686
CviKI_1 RGCY 8 cut(s) 22, 323, 353, 379, 386, 461, 578, 686
CviQI GTAC 2 cut(s) 157, 232
DdeI CTNAG 1 cut(s) 430
DpnI GATC 1 cut(s) 497
DpnII GATC 1 cut(s) 495
Eam1104I CTCTTC 2 cut(s) 33, 80
EarI CTCTTC 2 cut(s) 33, 80
Eco130I CCWWGG 1 cut(s) 477
EcoT14I CCWWGG 1 cut(s) 477
ErhI CCWWGG 1 cut(s) 477
FaeI CATG 3 cut(s) 84, 248, 470
FaiI YATR 9 cut(s) 51, 82, 246, 333, 335, 468, 639, 647, 649
FalI AAGNNNNNCTT 4 cut(s) 186, 218, 470, 502
FatI CATG 3 cut(s) 80, 244, 466
Fnu4HI GCNGC 6 cut(s) 293, 324, 384, 387, 390, 462
FokI GGATG 2 cut(s) 494, 572
Fsp4HI GCNGC 6 cut(s) 293, 324, 384, 387, 390, 462
FspI TGCGCA 1 cut(s) 465
GlaI GCGC 1 cut(s) 465
GluI GCNGC 6 cut(s) 293, 324, 384, 387, 390, 462
HaeIII GGCC 1 cut(s) 353
HapII CCGG 1 cut(s) 493
HgaI GACGC 1 cut(s) 642
HhaI GCGC 1 cut(s) 466
Hin1I GRCGYC 1 cut(s) 634
Hin1II CATG 3 cut(s) 84, 248, 470
Hin6I GCGC 1 cut(s) 464
HinP1I GCGC 1 cut(s) 464
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HinfI GANTC 1 cut(s) 471
HpaII CCGG 1 cut(s) 493
HphI GGTGA 2 cut(s) 70, 466
Hpy166II GTNNAC 2 cut(s) 419, 514
Hpy188I TCNGA 1 cut(s) 500
Hpy8I GTNNAC 2 cut(s) 419, 514
Hpy99I CGWCG 3 cut(s) 292, 304, 307
HpyAV CCTTC 3 cut(s) 33, 249, 623
HpyCH4III ACNGT 4 cut(s) 44, 156, 369, 416
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 4 cut(s) 4, 326, 419, 490
HpyF10VI GCNNNNNNNGC 2 cut(s) 389, 398
HpyF3I CTNAG 1 cut(s) 430
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 634
Hsp92II CATG 3 cut(s) 84, 248, 470
HspAI GCGC 1 cut(s) 464
Kzo9I GATC 1 cut(s) 495
LpnPI CCDG 6 cut(s) 177, 365, 411, 441, 506, 542
Lsp1109I GCAGC 6 cut(s) 279, 310, 373, 376, 395, 448
LweI GCATC 4 cut(s) 196, 394, 472, 681
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 125, 451
MalI GATC 1 cut(s) 497
MboI GATC 1 cut(s) 495
MboII GAAGA 4 cut(s) 20, 97, 620, 631
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 2 cut(s) 76, 227
MmeI TCCRAC 1 cut(s) 351
MseI TTAA 1 cut(s) 122
MslI CAYNNNNRTG 2 cut(s) 179, 254
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 1 cut(s) 493
MwoI GCNNNNNNNGC 2 cut(s) 389, 398
NdeII GATC 1 cut(s) 495
NlaIII CATG 3 cut(s) 84, 248, 470
NmuCI GTSAC 2 cut(s) 125, 451
NsbI TGCGCA 1 cut(s) 465
PcsI WCGNNNNNNNCGW 1 cut(s) 296
PfeI GAWTC 1 cut(s) 471
PkrI GCNGC 6 cut(s) 294, 325, 385, 388, 391, 463
PstI CTGCAG 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 389
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 2 cut(s) 158, 233
RsaNI GTAC 2 cut(s) 157, 232
RseI CAYNNNNRTG 2 cut(s) 179, 254
SaqAI TTAA 1 cut(s) 122
SatI GCNGC 6 cut(s) 293, 324, 384, 387, 390, 462
Sau3AI GATC 1 cut(s) 495
SduI GDGCHC 1 cut(s) 421
SfaNI GCATC 4 cut(s) 196, 394, 472, 681
SfcI CTRYAG 1 cut(s) 324
SmiMI CAYNNNNRTG 2 cut(s) 179, 254
Sse9I AATT 2 cut(s) 76, 227
SspI AATATT 1 cut(s) 586
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 4 cut(s) 44, 156, 369, 416
TaiI ACGT 1 cut(s) 183
TaqI TCGA 1 cut(s) 305
TasI AATT 2 cut(s) 76, 227
TatI WGTACW 2 cut(s) 156, 231
TfiI GAWTC 1 cut(s) 471
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TscAI CASTG 3 cut(s) 49, 421, 460
TseFI GTSAC 2 cut(s) 125, 451
TseI GCWGC 6 cut(s) 292, 323, 383, 386, 389, 461
Tsp45I GTSAC 2 cut(s) 125, 451
TspDTI ATGAA 1 cut(s) 69
TspGWI ACGGA 1 cut(s) 288
TspRI CASTG 3 cut(s) 49, 421, 460
VneI GTGCAC 1 cut(s) 417
XapI RAATTY 1 cut(s) 76
XcmI CCANNNNNNNNNTGG 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.