Rh2DG486700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0017116
Physical Location & Seq
Reverse (-)
70253629 .. 70254615
987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG486700.1

Sequence Viewer

Length: 351 bp
ATGGACATGAAGAGGAACTTGGGGGCCGTCAAGGATAAGATACTGGAGAAGCTTGCGGCACACGCACCTACTGTTCCCGCTGATGCTTTGGACAACGTGCGCCACTTCTTGGAGAGTGTTGTCAAGGATGTGACCGACGCTACTGGGGTGGCCCGTGGTGTCACCACGGATGCGTTGAACCGTATCAAAACTCAACTTGGTGACATGCTGCCCAACCTCACTCCAGACGCCACCAAGAAGATGGTGGATGAAGCGGAAAATGAATTATTAGCTACTAATGAAGACGGTGCCAGATGCAAAGATGAAAGAAACCACAAGGAAGGAAATCAAAAACAATCATCGAGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.72

Weight (kDa)

5.9

Isoelectric Point (pI)

26.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16730
fragaria_vesca FvH4_6g36360
malus_domestica MD04G1031600.v1.1
pyrus_communis pycom09g08720
rosa_laevigata RLG00000020343
rosa_multiflora Rmu_co8423113.1_g000001
rosa_roxburghii Rroxscaffold_2G00098830
rosa_rugosa Rorug02G0406100 Rorug02G0406100 Rorug02G0406100
rosa_samantha Rh2BG477800 Rh2DG486700
rosa_wichuraiana Rw2G037910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 287
AccB7I CCANNNNNTGG 1 cut(s) 109
AciI CCGC 3 cut(s) 56, 78, 254
AcyI GRCGYC 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 1 cut(s) 178
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AluBI AGCT 2 cut(s) 52, 272
AluI AGCT 2 cut(s) 52, 272
AoxI GGCC 2 cut(s) 24, 150
ApeKI GCWGC 1 cut(s) 208
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 2 cut(s) 24, 151
AsuHPI GGTGA 2 cut(s) 154, 212
BanI GGYRCC 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 195
BccI CCATC 1 cut(s) 235
BceAI ACGGC 1 cut(s) 11
BisI GCNGC 2 cut(s) 57, 209
BlsI GCNGC 2 cut(s) 58, 210
BmgT120I GGNCC 2 cut(s) 24, 151
BmiI GGNNCC 2 cut(s) 25, 289
BmrI ACTGGG 1 cut(s) 153
BmsI GCATC 3 cut(s) 73, 160, 284
BmuI ACTGGG 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 288
BpmI CTGGAG 2 cut(s) 65, 207
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 154, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse1I ACTGG 2 cut(s) 48, 148
BseDI CCNNGG 2 cut(s) 154, 165
BseGI GGATG 3 cut(s) 133, 175, 253
BseLI CCNNNNNNNGG 1 cut(s) 109
BseNI ACTGG 2 cut(s) 48, 148
BseXI GCAGC 1 cut(s) 195
BshFI GGCC 2 cut(s) 26, 152
BshNI GGYRCC 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 109
BsnI GGCC 2 cut(s) 26, 152
BspACI CCGC 3 cut(s) 56, 78, 254
BspANI GGCC 2 cut(s) 26, 152
BspLI GGNNCC 2 cut(s) 25, 289
BspT107I GGYRCC 1 cut(s) 287
BsrI ACTGG 2 cut(s) 48, 148
BssECI CCNNGG 2 cut(s) 154, 165
BssNI GRCGYC 1 cut(s) 228
Bst4CI ACNGT 3 cut(s) 73, 182, 287
Bst6I CTCTTC 1 cut(s) 5
BstACI GRCGYC 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 54
BstDSI CCRYGG 2 cut(s) 154, 165
BstF5I GGATG 3 cut(s) 133, 175, 253
BstHHI GCGC 1 cut(s) 102
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNSI RCATGY 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 195
BstV2I GAAGAC 1 cut(s) 288
BstXI CCANNNNNNTGG 1 cut(s) 241
BsuRI GGCC 2 cut(s) 26, 152
BtgI CCRYGG 2 cut(s) 154, 165
BtsCI GGATG 3 cut(s) 133, 175, 253
Cac8I GCNNGC 1 cut(s) 54
CfoI GCGC 1 cut(s) 102
Cfr13I GGNCC 2 cut(s) 24, 151
CseI GACGC 2 cut(s) 146, 236
CviAII CATG 2 cut(s) 7, 205
CviJI RGCY 5 cut(s) 26, 52, 152, 272, 346
CviKI_1 RGCY 5 cut(s) 26, 52, 152, 272, 346
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
FaeI CATG 2 cut(s) 10, 208
FaiI YATR 2 cut(s) 8, 206
FalI AAGNNNNNCTT 1 cut(s) 34
FatI CATG 2 cut(s) 6, 204
FauI CCCGC 1 cut(s) 85
Fnu4HI GCNGC 2 cut(s) 57, 209
FokI GGATG 3 cut(s) 140, 182, 260
Fsp4HI GCNGC 2 cut(s) 57, 209
GlaI GCGC 1 cut(s) 101
GluI GCNGC 2 cut(s) 57, 209
GsuI CTGGAG 2 cut(s) 65, 207
HaeIII GGCC 2 cut(s) 26, 152
HgaI GACGC 2 cut(s) 146, 236
HhaI GCGC 1 cut(s) 102
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 2 cut(s) 10, 208
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HindIII AAGCTT 1 cut(s) 50
HphI GGTGA 2 cut(s) 154, 212
Hpy188III TCNNGA 1 cut(s) 224
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 314
HpyCH4III ACNGT 3 cut(s) 73, 182, 287
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 1 cut(s) 297
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpySE526I ACGT 1 cut(s) 96
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 2 cut(s) 10, 208
HspAI GCGC 1 cut(s) 100
LpnPI CCDG 4 cut(s) 29, 129, 237, 304
Lsp1109I GCAGC 1 cut(s) 195
LweI GCATC 3 cut(s) 73, 160, 284
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 3 cut(s) 130, 160, 200
MboII GAAGA 3 cut(s) 22, 250, 293
MluCI AATT 1 cut(s) 263
MnlI CCTC 3 cut(s) 6, 227, 336
MspA1I CMGCKG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 62
NlaIII CATG 2 cut(s) 10, 208
NlaIV GGNNCC 2 cut(s) 25, 289
NmuCI GTSAC 3 cut(s) 130, 160, 200
NspI RCATGY 1 cut(s) 208
PflMI CCANNNNNTGG 1 cut(s) 109
PkrI GCNGC 2 cut(s) 58, 210
PspN4I GGNNCC 2 cut(s) 25, 289
PspPI GGNCC 2 cut(s) 24, 151
SatI GCNGC 2 cut(s) 57, 209
Sau96I GGNCC 2 cut(s) 24, 151
SetI ASST 5 cut(s) 54, 70, 99, 219, 274
SfaNI GCATC 3 cut(s) 73, 160, 284
Sse9I AATT 1 cut(s) 263
SsiI CCGC 3 cut(s) 56, 78, 254
TaaI ACNGT 3 cut(s) 73, 182, 287
TaiI ACGT 1 cut(s) 99
TaqI TCGA 1 cut(s) 341
TaqII GACCGA 1 cut(s) 149
TasI AATT 1 cut(s) 263
TauI GCSGC 1 cut(s) 59
TseFI GTSAC 3 cut(s) 130, 160, 200
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 3 cut(s) 130, 160, 200
TspDTI ATGAA 5 cut(s) 23, 264, 276, 294, 318
TspGWI ACGGA 1 cut(s) 182
Van91I CCANNNNNTGG 1 cut(s) 109
XceI RCATGY 1 cut(s) 208
XcmI CCANNNNNNNNNTGG 2 cut(s) 238, 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.