AT1G16770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014616
Physical Location & Seq
Forward (+)
5737839 .. 5739377
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G16770.2

Sequence Viewer

Length: 975 bp
ATGGGACAAGGTAAAGAAGTTAAGACGAGACCAGATCCTCAAGTTGAGATTCAGGAAAGAGGAGAAATATTCTTCTTTTATAGACCAAAGGTTAACAAAGAAGAAGCTCACAGTGTGGACGATGTTCAAAGGCTATACATAGTGATGCGTCCTGAGTCTGGTGAGAATCCCACCGAAGAGAAACAAGACCCTCTTTCAGGTAAAGAAGGCTCCGATAAAGATTCCGGTGACGGAGAGGCGAGTGGTAGCTCCTCCGGCGCCAAGAACCAAGGTGAAGGAGGACACGGCGTCGAGAAAGTGAACATCGAGAAACAGCTTCTGCTACGATTCATTGTGATGGGTAAGAAAAGTCTTCCTGATCCGAGCAAGAAGTCGCAACCTTTTTGGGGTTTCGTGGAAATGGTGACGACCAATGTTGAAGATGTTAAAAATGCTCTCAAAGGAGAGGAGTATGAGACGAAGACTCGAGGACATAGACACAAACCTCCGGCGAGAGCTGTCGGAGAAGGAATATACAGAATTCTCCGACATAAACCTAATCCGACAAGAAAGCACCACACACATCTTGTCTACAAACTCGAATTCCCATCGGTTTCGCAGACCAGAGAACACGAGCCACAAGAGTCGCTGAACATTGAGCCAGAAGGATCCTTCTTGATCCAAATACGAAATCCAGAGCAAGGAGGAGGAGGTAGGTCAGGGTTTGGTGGGCTACAGAGAAAGAGAAAGGCCCAGTTTCCGGTCCATATTCAGGCTCATTTAGGTCATACCCGGTTTGGGCCAGCCGACCCACCTGATTTCCTGAATTATGAAGGATGTGAGTTGTTACTGATCTCTGCTTCCGACGATATAGAGGAAGAGTTAGGGATGGAGTTGGAGCCTGAGGGTGACGGTGAAGAATCGACATGCGATCTTTTGAAGACTTTCGGGGACGATGTTGAAGCTACTCCGTTGCTTCGTGGTACATGGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

324

Amino Acids

36.22

Weight (kDa)

5.43

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014616)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16770 AT1G16770 AT1G16770
fragaria_vesca FvH4_6g36570
malus_domestica MD17G1161100.v1.1
prunus_persica Prupe.3G025300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0149061
rosa_laevigata RLG00000020365
rosa_multiflora Rmu_sc0007360.1_g000002
rosa_roxburghii Rroxscaffold_2G00098510
rosa_rugosa Rorug02G0408900 Rorug02G0409000
rosa_samantha Rh2AG468300 Rh2BG481000 Rh2CG454500 Rh2DG489800
rosa_wichuraiana Rw2G038140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 257
AccI GTMKAC 1 cut(s) 570
AclWI GGATC 5 cut(s) 29, 353, 642, 652, 655
AcsI RAATTY 2 cut(s) 519, 581
AcyI GRCGYC 2 cut(s) 258, 288
AdeI CACNNNGTG 1 cut(s) 115
AfaI GTAC 1 cut(s) 964
AfiI CCNNNNNNNGG 7 cut(s) 158, 197, 386, 680, 739, 751, 777
AgsI TTSAA 4 cut(s) 128, 419, 919, 941
AhdI GACNNNNNGTC 1 cut(s) 287
AluBI AGCT 5 cut(s) 107, 249, 316, 497, 944
AluI AGCT 5 cut(s) 107, 249, 316, 497, 944
Alw26I GTCTC 2 cut(s) 22, 449
AlwI GGATC 5 cut(s) 29, 353, 642, 652, 655
AlwNI CAGNNNCTG 1 cut(s) 319
Ama87I CYCGRG 1 cut(s) 465
AoxI GGCC 2 cut(s) 729, 779
ApoI RAATTY 2 cut(s) 519, 581
Asp700I GAANNNNTTC 1 cut(s) 923
AspLEI GCGC 1 cut(s) 260
AspS9I GGNCC 3 cut(s) 730, 742, 779
AsuC2I CCSGG 1 cut(s) 772
AsuHPI GGTGA 6 cut(s) 173, 239, 284, 415, 899, 905
AvaI CYCGRG 1 cut(s) 465
AvaII GGWCC 1 cut(s) 742
AxyI CCTNAGG 1 cut(s) 882
BamHI GGATCC 1 cut(s) 647
BanI GGYRCC 1 cut(s) 257
BauI CACGAG 1 cut(s) 611
BbsI GAAGAC 3 cut(s) 344, 467, 926
BccI CCATC 3 cut(s) 331, 595, 862
BceAI ACGGC 1 cut(s) 301
BcnI CCSGG 1 cut(s) 772
BcoDI GTCTC 2 cut(s) 22, 449
BfmI CTRYAG 1 cut(s) 713
BfoI RGCGCY 1 cut(s) 261
Bme1390I CCNGG 1 cut(s) 772
Bme18I GGWCC 1 cut(s) 742
BmeRI GACNNNNNGTC 1 cut(s) 287
BmeT110I CYCGRG 1 cut(s) 465
BmgT120I GGNCC 3 cut(s) 730, 742, 779
BmiI GGNNCC 4 cut(s) 211, 259, 649, 879
BmrFI CCNGG 1 cut(s) 772
BmrI ACTGGG 1 cut(s) 727
BmsI GCATC 1 cut(s) 135
BmuI ACTGGG 1 cut(s) 727
BpiI GAAGAC 3 cut(s) 344, 467, 926
BpuEI CTTGAG 1 cut(s) 24
BpuMI CCSGG 1 cut(s) 772
BsaHI GRCGYC 2 cut(s) 258, 288
BsaI GGTCTC 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 268
BsaWI WCCGGW 2 cut(s) 224, 739
Bsc4I CCNNNNNNNGG 7 cut(s) 158, 197, 386, 680, 739, 751, 777
Bse1I ACTGG 1 cut(s) 733
Bse21I CCTNAGG 1 cut(s) 882
BseDI CCNNGG 1 cut(s) 268
BseGI GGATG 2 cut(s) 821, 873
BseLI CCNNNNNNNGG 7 cut(s) 158, 197, 386, 680, 739, 751, 777
BseMII CTCAG 2 cut(s) 144, 873
BseNI ACTGG 1 cut(s) 733
BseRI GAGGAG 5 cut(s) 75, 241, 461, 699, 702
BshFI GGCC 2 cut(s) 731, 781
BshNI GGYRCC 1 cut(s) 257
BsiHKCI CYCGRG 1 cut(s) 465
BsiSI CCGG 5 cut(s) 225, 255, 488, 740, 772
BslFI GGGAC 2 cut(s) 18, 944
BslI CCNNNNNNNGG 7 cut(s) 158, 197, 386, 680, 739, 751, 777
BsmAI GTCTC 2 cut(s) 22, 449
BsmBI CGTCTC 1 cut(s) 449
BsmFI GGGAC 2 cut(s) 18, 944
BsnI GGCC 2 cut(s) 731, 781
Bso31I GGTCTC 1 cut(s) 22
BsoBI CYCGRG 1 cut(s) 465
Bsp143I GATC 6 cut(s) 34, 358, 647, 657, 831, 910
BspANI GGCC 2 cut(s) 731, 781
BspCNI CTCAG 2 cut(s) 145, 874
BspLI GGNNCC 4 cut(s) 211, 259, 649, 879
BspPI GGATC 5 cut(s) 29, 353, 642, 652, 655
BspT107I GGYRCC 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 22
BsrI ACTGG 1 cut(s) 733
BssECI CCNNGG 1 cut(s) 268
BssMI GATC 6 cut(s) 34, 358, 647, 657, 831, 910
BssNI GRCGYC 2 cut(s) 258, 288
BssSI CACGAG 1 cut(s) 611
BssT1I CCWWGG 1 cut(s) 268
Bst2BI CACGAG 1 cut(s) 611
Bst4CI ACNGT 2 cut(s) 113, 893
Bst6I CTCTTC 2 cut(s) 171, 852
BstACI GRCGYC 2 cut(s) 258, 288
BstC8I GCNNGC 1 cut(s) 783
BstDEI CTNAG 2 cut(s) 153, 882
BstENI CCTNNNNNAGG 1 cut(s) 195
BstF5I GGATG 2 cut(s) 821, 873
BstH2I RGCGCY 1 cut(s) 261
BstHHI GCGC 1 cut(s) 260
BstKTI GATC 6 cut(s) 37, 361, 650, 660, 834, 913
BstMAI GTCTC 2 cut(s) 22, 449
BstMBI GATC 6 cut(s) 34, 358, 647, 657, 831, 910
BstMWI GCNNNNNNNGC 1 cut(s) 255
BstNSI RCATGY 1 cut(s) 909
BstSCI CCNGG 1 cut(s) 770
BstSFI CTRYAG 1 cut(s) 713
BstV2I GAAGAC 3 cut(s) 344, 467, 926
BstX2I RGATCY 2 cut(s) 34, 647
BstYI RGATCY 2 cut(s) 34, 647
Bsu36I CCTNAGG 1 cut(s) 882
BsuRI GGCC 2 cut(s) 731, 781
BtsCI GGATG 2 cut(s) 821, 873
BtsIMutI CAGTG 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 783
CaiI CAGNNNCTG 1 cut(s) 319
CfoI GCGC 1 cut(s) 260
Cfr13I GGNCC 3 cut(s) 730, 742, 779
CseI GACGC 2 cut(s) 137, 277
Csp6I GTAC 1 cut(s) 963
CviAII CATG 2 cut(s) 906, 966
CviQI GTAC 1 cut(s) 963
DdeI CTNAG 2 cut(s) 153, 882
DinI GGCGCC 1 cut(s) 259
DpnI GATC 6 cut(s) 36, 360, 649, 659, 833, 912
DpnII GATC 6 cut(s) 34, 358, 647, 657, 831, 910
DraIII CACNNNGTG 1 cut(s) 115
DriI GACNNNNNGTC 1 cut(s) 287
Eam1104I CTCTTC 2 cut(s) 171, 852
Eam1105I GACNNNNNGTC 1 cut(s) 287
EarI CTCTTC 2 cut(s) 171, 852
Eco130I CCWWGG 1 cut(s) 268
Eco31I GGTCTC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 742
Eco81I CCTNAGG 1 cut(s) 882
Eco88I CYCGRG 1 cut(s) 465
EcoNI CCTNNNNNAGG 1 cut(s) 195
EcoRI GAATTC 2 cut(s) 519, 581
EcoT14I CCWWGG 1 cut(s) 268
EgeI GGCGCC 1 cut(s) 259
EheI GGCGCC 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 268
Esp3I CGTCTC 1 cut(s) 449
FaeI CATG 2 cut(s) 909, 969
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FaqI GGGAC 2 cut(s) 18, 944
FatI CATG 2 cut(s) 905, 965
FblI GTMKAC 1 cut(s) 570
FokI GGATG 2 cut(s) 828, 880
GlaI GCGC 1 cut(s) 259
HaeII RGCGCY 1 cut(s) 261
HaeIII GGCC 2 cut(s) 731, 781
HapII CCGG 5 cut(s) 225, 255, 488, 740, 772
HgaI GACGC 2 cut(s) 137, 277
HhaI GCGC 1 cut(s) 260
Hin1I GRCGYC 2 cut(s) 258, 288
Hin1II CATG 2 cut(s) 909, 969
Hin6I GCGC 1 cut(s) 258
HinP1I GCGC 1 cut(s) 258
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 8 cut(s) 49, 155, 166, 221, 327, 463, 623, 899
HpaI GTTAAC 1 cut(s) 94
HpaII CCGG 5 cut(s) 225, 255, 488, 740, 772
HphI GGTGA 6 cut(s) 173, 239, 284, 415, 899, 905
Hpy166II GTNNAC 4 cut(s) 94, 118, 301, 571
Hpy188I TCNGA 6 cut(s) 214, 363, 503, 527, 543, 844
Hpy188III TCNNGA 8 cut(s) 53, 152, 292, 307, 356, 655, 674, 802
Hpy8I GTNNAC 4 cut(s) 94, 118, 301, 571
Hpy99I CGWCG 2 cut(s) 293, 848
HpyAV CCTTC 6 cut(s) 200, 269, 500, 638, 661, 806
HpyCH4III ACNGT 2 cut(s) 113, 893
HpyF10VI GCNNNNNNNGC 1 cut(s) 255
HpyF3I CTNAG 2 cut(s) 153, 882
Hsp92I GRCGYC 2 cut(s) 258, 288
Hsp92II CATG 2 cut(s) 909, 969
HspAI GCGC 1 cut(s) 258
KasI GGCGCC 1 cut(s) 257
KspAI GTTAAC 1 cut(s) 94
Kzo9I GATC 6 cut(s) 34, 358, 647, 657, 831, 910
LmnI GCTCC 3 cut(s) 215, 254, 877
LweI GCATC 1 cut(s) 135
MaeIII GTNAC 4 cut(s) 227, 403, 825, 887
MalI GATC 6 cut(s) 36, 360, 649, 659, 833, 912
MboI GATC 6 cut(s) 34, 358, 647, 657, 831, 910
MboII GAAGA 9 cut(s) 64, 113, 188, 344, 431, 472, 869, 908, 931
MflI RGATCY 2 cut(s) 34, 647
MluCI AATT 3 cut(s) 519, 581, 805
Mly113I GGCGCC 1 cut(s) 258
MlyI GAGTC 3 cut(s) 164, 457, 632
MmeI TCCRAC 5 cut(s) 481, 550, 566, 855, 867
MroXI GAANNNNTTC 1 cut(s) 923
MseI TTAA 3 cut(s) 21, 93, 426
MslI CAYNNNNRTG 2 cut(s) 143, 335
MspI CCGG 5 cut(s) 225, 255, 488, 740, 772
MspR9I CCNGG 1 cut(s) 772
MwoI GCNNNNNNNGC 1 cut(s) 255
NarI GGCGCC 1 cut(s) 258
NciI CCSGG 1 cut(s) 772
NdeII GATC 6 cut(s) 34, 358, 647, 657, 831, 910
NlaIII CATG 2 cut(s) 909, 969
NlaIV GGNNCC 4 cut(s) 211, 259, 649, 879
NmuCI GTSAC 3 cut(s) 227, 403, 887
NspI RCATGY 1 cut(s) 909
PaeR7I CTCGAG 1 cut(s) 465
PdmI GAANNNNTTC 1 cut(s) 923
PfeI GAWTC 5 cut(s) 49, 166, 221, 327, 899
PleI GAGTC 3 cut(s) 163, 457, 631
PluTI GGCGCC 1 cut(s) 261
PpsI GAGTC 3 cut(s) 163, 457, 631
PspN4I GGNNCC 4 cut(s) 211, 259, 649, 879
PspPI GGNCC 3 cut(s) 730, 742, 779
PspXI VCTCGAGB 1 cut(s) 465
PstNI CAGNNNCTG 1 cut(s) 319
PsuI RGATCY 2 cut(s) 34, 647
RsaI GTAC 1 cut(s) 964
RsaNI GTAC 1 cut(s) 963
RseI CAYNNNNRTG 2 cut(s) 143, 335
SaqAI TTAA 3 cut(s) 21, 93, 426
Sau3AI GATC 6 cut(s) 34, 358, 647, 657, 831, 910
Sau96I GGNCC 3 cut(s) 730, 742, 779
SchI GAGTC 3 cut(s) 164, 457, 632
ScrFI CCNGG 1 cut(s) 772
SfaNI GCATC 1 cut(s) 135
SfcI CTRYAG 1 cut(s) 713
SfoI GGCGCC 1 cut(s) 259
Sfr274I CTCGAG 1 cut(s) 465
SinI GGWCC 1 cut(s) 742
SlaI CTCGAG 1 cut(s) 465
SmiMI CAYNNNNRTG 2 cut(s) 143, 335
SmlI CTYRAG 2 cut(s) 39, 465
SmoI CTYRAG 2 cut(s) 39, 465
Sse9I AATT 3 cut(s) 519, 581, 805
SspDI GGCGCC 1 cut(s) 257
SspI AATATT 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 770
StyI CCWWGG 1 cut(s) 268
TaaI ACNGT 2 cut(s) 113, 893
TaqI TCGA 5 cut(s) 291, 306, 466, 579, 902
TasI AATT 3 cut(s) 519, 581, 805
TfiI GAWTC 5 cut(s) 49, 166, 221, 327, 899
Tru1I TTAA 3 cut(s) 21, 93, 426
Tru9I TTAA 3 cut(s) 21, 93, 426
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 3 cut(s) 227, 403, 887
Tsp45I GTSAC 3 cut(s) 227, 403, 887
TspDTI ATGAA 2 cut(s) 319, 825
TspGWI ACGGA 2 cut(s) 246, 939
TspRI CASTG 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 742
XagI CCTNNNNNAGG 1 cut(s) 195
XapI RAATTY 2 cut(s) 519, 581
XceI RCATGY 1 cut(s) 909
XhoI CTCGAG 1 cut(s) 465
XmiI GTMKAC 1 cut(s) 570
XmnI GAANNNNTTC 1 cut(s) 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.