MD17G1161100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0014616
Physical Location & Seq
Forward (+)
15817171 .. 15818945
1775 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1161100.v1.1.491

Sequence Viewer

Length: 1005 bp
ATGGGACAAGGCCAAGAAGTTAAGACTAAAGATGATGCCCAAGTTGAAATTCAGGAAGGGGGGGAAATATTTTTCTTCTACCGGCCAAGGGTAAACAAAGAAGAAGCGCGCAGCCCAGACGACGTTCAACGGTTGTACATCGTTTTAAGGCCGGAGACCGGTGAGAGGCCAGTGGAAGAAAAGCAGGACCCCGATTCGGGAAAAGAAGGTGCAATGGCAAAGAAGAAGGGACCGAAAAGTTCTGGTGAAAGCGAGAAGGGTTCGGGTGGTAGCGGAAAAAGTGAAGGTGGTGGGCATGGCAGGCAGGAAGTGAACATTGAGAAGCAGCCATCGCTGAGGTTCATAGTGAAGGGAAGGAAAAGCCTTCCAGATCCAGGAAATAAAGGCAGACCCTACCGGGGTTTTGTTGAGATGGTCACCACGAATATTGATGATGTGAAAACTGCTCTTCAAGGGGTTTTGGACATAATCCAAAAAAGATGGGTAGAGATCAGTGTTCATTCTATGACACAACATACTTCTGAAGCAAGGGCATTAGGAGAAGGCGTTTACCGCATTCTGCGGCACGAGGGGGGGAAGAAACACCACACTCATCTGATTTACAAGCTGGAGTTCCCACCCGAAAATGAGAGCAATGAGCCTCAGGAGTCGCTTAACATTAAACATGAAGGCTCATTTCATATTCAGATAAAGAACCCTAATCAACACGCCAGCAGCAGTACTAGTTCTCGGTCCAGAGGGCTACGGAACAAGCGCACAGCTAATTTTCCTGCCCACCTGCAAGACCTGTTTGGGAAATTACGGCACCACCCAGTTGATCCACCCGACTTCTTGAACTACGAAGGATGTGAGTTCTTGCTCATTTCAGCTTCGGATGATGTAGAAGAGGAGTTGGGGTTGGATCTTCAGACAGAAGGGGAAGCCAATGAATCTTGTTCCGATTTGATCAAGACTTTCGGGGAGACTGCATCAACCAAACCTCTTCTGAAAGGCACTTGGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

335

Amino Acids

37.26

Weight (kDa)

6.14

Isoelectric Point (pI)

53.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014616)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16770 AT1G16770 AT1G16770
fragaria_vesca FvH4_6g36570
malus_domestica MD17G1161100.v1.1
prunus_persica Prupe.3G025300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0149061
rosa_laevigata RLG00000020365
rosa_multiflora Rmu_sc0007360.1_g000002
rosa_roxburghii Rroxscaffold_2G00098510
rosa_rugosa Rorug02G0408900 Rorug02G0409000
rosa_samantha Rh2AG468300 Rh2BG481000 Rh2CG454500 Rh2DG489800
rosa_wichuraiana Rw2G038140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 786
Acc36I ACCTGC 1 cut(s) 786
AccB1I GGYRCC 1 cut(s) 804
AccII CGCG 1 cut(s) 109
AciI CCGC 3 cut(s) 273, 553, 562
AclWI GGATC 3 cut(s) 365, 812, 909
AcoI YGGCCR 1 cut(s) 83
AcsI RAATTY 1 cut(s) 48
AcuI CTGAAG 2 cut(s) 543, 890
AfaI GTAC 2 cut(s) 137, 721
AfiI CCNNNNNNNGG 7 cut(s) 88, 158, 165, 196, 197, 374, 398
AgeI ACCGGT 1 cut(s) 158
AgsI TTSAA 4 cut(s) 47, 128, 452, 835
AhlI ACTAGT 1 cut(s) 722
AjnI CCWGG 1 cut(s) 373
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
AleI CACNNNNGTG 1 cut(s) 998
AluBI AGCT 3 cut(s) 607, 761, 869
AluI AGCT 3 cut(s) 607, 761, 869
Alw26I GTCTC 2 cut(s) 149, 956
AlwI GGATC 3 cut(s) 365, 812, 909
AoxI GGCC 4 cut(s) 10, 83, 149, 167
ApeKI GCWGC 3 cut(s) 111, 325, 714
ApoI RAATTY 1 cut(s) 48
AsiGI ACCGGT 1 cut(s) 158
AspLEI GCGC 3 cut(s) 109, 111, 756
AspS9I GGNCC 3 cut(s) 187, 230, 732
AsuC2I CCSGG 1 cut(s) 398
AsuHPI GGTGA 3 cut(s) 173, 257, 409
AvaII GGWCC 3 cut(s) 187, 230, 732
AxyI CCTNAGG 1 cut(s) 642
BanI GGYRCC 1 cut(s) 804
BauI CACGAG 1 cut(s) 566
BbvCI CCTCAGC 1 cut(s) 335
BbvI GCAGC 3 cut(s) 123, 337, 726
BccI CCATC 3 cut(s) 337, 406, 474
BceAI ACGGC 1 cut(s) 818
BciT130I CCWGG 1 cut(s) 375
BclI TGATCA 1 cut(s) 945
BcnI CCSGG 1 cut(s) 398
BcoDI GTCTC 2 cut(s) 149, 956
BcuI ACTAGT 1 cut(s) 722
BfaI CTAG 1 cut(s) 723
BfuAI ACCTGC 1 cut(s) 786
BisI GCNGC 4 cut(s) 112, 326, 563, 715
BlsI GCNGC 4 cut(s) 113, 327, 564, 716
BmcAI AGTACT 1 cut(s) 721
Bme1390I CCNGG 2 cut(s) 375, 398
Bme18I GGWCC 3 cut(s) 187, 230, 732
BmgT120I GGNCC 3 cut(s) 187, 230, 732
BmiI GGNNCC 3 cut(s) 189, 231, 806
BmrFI CCNGG 2 cut(s) 375, 398
BmrI ACTGGG 1 cut(s) 806
BmsI GCATC 2 cut(s) 25, 977
BmuI ACTGGG 1 cut(s) 806
BpmI CTGGAG 1 cut(s) 629
Bpu10I CCTNAGC 1 cut(s) 335
BpuMI CCSGG 1 cut(s) 398
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 86, 397
BsaWI WCCGGW 1 cut(s) 158
BsaXI ACNNNNNCTCC 4 cut(s) 531, 561, 881, 911
Bsc4I CCNNNNNNNGG 7 cut(s) 88, 158, 165, 196, 197, 374, 398
Bse118I RCCGGY 2 cut(s) 81, 158
Bse1I ACTGG 2 cut(s) 170, 812
Bse21I CCTNAGG 1 cut(s) 642
Bse3DI GCAATG 2 cut(s) 219, 640
BseBI CCWGG 1 cut(s) 375
BseDI CCNNGG 2 cut(s) 86, 397
BseGI GGATG 2 cut(s) 851, 880
BseLI CCNNNNNNNGG 7 cut(s) 88, 158, 165, 196, 197, 374, 398
BseMI GCAATG 2 cut(s) 219, 640
BseMII CTCAG 2 cut(s) 326, 656
BseNI ACTGG 2 cut(s) 170, 812
BsePI GCGCGC 1 cut(s) 107
BseRI GAGGAG 1 cut(s) 902
BseXI GCAGC 3 cut(s) 123, 337, 726
Bsh1236I CGCG 1 cut(s) 109
BshFI GGCC 4 cut(s) 12, 85, 151, 169
BshNI GGYRCC 1 cut(s) 804
BshTI ACCGGT 1 cut(s) 158
BsiSI CCGG 4 cut(s) 82, 152, 159, 397
BslFI GGGAC 2 cut(s) 18, 243
BslI CCNNNNNNNGG 7 cut(s) 88, 158, 165, 196, 197, 374, 398
BsmAI GTCTC 2 cut(s) 149, 956
BsmFI GGGAC 2 cut(s) 18, 243
BsmI GAATGC 1 cut(s) 555
BsnI GGCC 4 cut(s) 12, 85, 151, 169
Bso31I GGTCTC 1 cut(s) 149
Bsp1407I TGTACA 1 cut(s) 135
Bsp143I GATC 5 cut(s) 370, 489, 817, 901, 945
BspACI CCGC 3 cut(s) 273, 553, 562
BspANI GGCC 4 cut(s) 12, 85, 151, 169
BspCNI CTCAG 2 cut(s) 327, 655
BspFNI CGCG 1 cut(s) 109
BspLI GGNNCC 3 cut(s) 189, 231, 806
BspMI ACCTGC 1 cut(s) 786
BspPI GGATC 3 cut(s) 365, 812, 909
BspQI GCTCTTC 1 cut(s) 453
BspT107I GGYRCC 1 cut(s) 804
BspTNI GGTCTC 1 cut(s) 149
BsrDI GCAATG 2 cut(s) 219, 640
BsrFI RCCGGY 2 cut(s) 81, 158
BsrGI TGTACA 1 cut(s) 135
BsrI ACTGG 2 cut(s) 170, 812
BssAI RCCGGY 2 cut(s) 81, 158
BssECI CCNNGG 2 cut(s) 86, 397
BssHII GCGCGC 1 cut(s) 107
BssMI GATC 5 cut(s) 370, 489, 817, 901, 945
BssSI CACGAG 1 cut(s) 566
BssT1I CCWWGG 1 cut(s) 86
Bst2BI CACGAG 1 cut(s) 566
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 1 cut(s) 132
Bst6I CTCTTC 3 cut(s) 453, 879, 987
BstAUI TGTACA 1 cut(s) 135
BstC8I GCNNGC 3 cut(s) 109, 302, 712
BstDEI CTNAG 2 cut(s) 335, 642
BstEII GGTNACC 1 cut(s) 415
BstF5I GGATG 2 cut(s) 851, 880
BstFNI CGCG 1 cut(s) 109
BstHHI GCGC 3 cut(s) 109, 111, 756
BstKTI GATC 5 cut(s) 373, 492, 820, 904, 948
BstMAI GTCTC 2 cut(s) 149, 956
BstMBI GATC 5 cut(s) 370, 489, 817, 901, 945
BstMWI GCNNNNNNNGC 3 cut(s) 301, 331, 552
BstNI CCWGG 1 cut(s) 375
BstPI GGTNACC 1 cut(s) 415
BstSCI CCNGG 2 cut(s) 373, 396
BstUI CGCG 1 cut(s) 109
BstV1I GCAGC 3 cut(s) 123, 337, 726
BstX2I RGATCY 2 cut(s) 370, 901
BstYI RGATCY 2 cut(s) 370, 901
Bsu36I CCTNAGG 1 cut(s) 642
BsuRI GGCC 4 cut(s) 12, 85, 151, 169
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 2 cut(s) 851, 880
BtsIMutI CAGTG 2 cut(s) 177, 499
BveI ACCTGC 1 cut(s) 786
Cac8I GCNNGC 3 cut(s) 109, 302, 712
CfoI GCGC 3 cut(s) 109, 111, 756
Cfr10I RCCGGY 2 cut(s) 81, 158
Cfr13I GGNCC 3 cut(s) 187, 230, 732
Csp6I GTAC 2 cut(s) 136, 720
CspAI ACCGGT 1 cut(s) 158
CspCI CAANNNNNGTGG 2 cut(s) 409, 444
CviAII CATG 2 cut(s) 296, 665
CviQI GTAC 2 cut(s) 136, 720
DdeI CTNAG 2 cut(s) 335, 642
DpnI GATC 5 cut(s) 372, 491, 819, 903, 947
DpnII GATC 5 cut(s) 370, 489, 817, 901, 945
EaeI YGGCCR 1 cut(s) 83
Eam1104I CTCTTC 3 cut(s) 453, 879, 987
EarI CTCTTC 3 cut(s) 453, 879, 987
Eco130I CCWWGG 1 cut(s) 86
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 3 cut(s) 187, 230, 732
Eco57I CTGAAG 2 cut(s) 543, 890
Eco81I CCTNAGG 1 cut(s) 642
Eco91I GGTNACC 1 cut(s) 415
EcoO109I RGGNCCY 1 cut(s) 187
EcoO65I GGTNACC 1 cut(s) 415
EcoRII CCWGG 1 cut(s) 373
EcoT14I CCWWGG 1 cut(s) 86
ErhI CCWWGG 1 cut(s) 86
FaeI CATG 2 cut(s) 299, 668
FaiI YATR 7 cut(s) 297, 344, 467, 506, 516, 666, 681
FaqI GGGAC 2 cut(s) 18, 243
FatI CATG 2 cut(s) 295, 664
FbaI TGATCA 1 cut(s) 945
Fnu4HI GCNGC 4 cut(s) 112, 326, 563, 715
FokI GGATG 2 cut(s) 858, 887
Fsp4HI GCNGC 4 cut(s) 112, 326, 563, 715
FspBI CTAG 1 cut(s) 723
GlaI GCGC 3 cut(s) 108, 110, 755
GluI GCNGC 4 cut(s) 112, 326, 563, 715
GsuI CTGGAG 1 cut(s) 629
HaeIII GGCC 4 cut(s) 12, 85, 151, 169
HapII CCGG 4 cut(s) 82, 152, 159, 397
HhaI GCGC 3 cut(s) 109, 111, 756
Hin1II CATG 2 cut(s) 299, 668
Hin6I GCGC 3 cut(s) 107, 109, 754
HinP1I GCGC 3 cut(s) 107, 109, 754
HinfI GANTC 3 cut(s) 194, 647, 929
HpaII CCGG 4 cut(s) 82, 152, 159, 397
HphI GGTGA 3 cut(s) 173, 257, 409
Hpy166II GTNNAC 3 cut(s) 94, 313, 550
Hpy188I TCNGA 7 cut(s) 523, 597, 687, 874, 909, 940, 987
Hpy188III TCNNGA 7 cut(s) 53, 198, 368, 644, 735, 832, 949
Hpy8I GTNNAC 3 cut(s) 94, 313, 550
Hpy99I CGWCG 1 cut(s) 125
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 3 cut(s) 212, 781, 968
HpyF10VI GCNNNNNNNGC 3 cut(s) 301, 331, 552
HpyF3I CTNAG 2 cut(s) 335, 642
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 2 cut(s) 299, 668
HspAI GCGC 3 cut(s) 107, 109, 754
Ksp22I TGATCA 1 cut(s) 945
Kzo9I GATC 5 cut(s) 370, 489, 817, 901, 945
LguI GCTCTTC 1 cut(s) 453
Lsp1109I GCAGC 3 cut(s) 123, 337, 726
LweI GCATC 2 cut(s) 25, 977
MaeI CTAG 1 cut(s) 723
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 415
MalI GATC 5 cut(s) 372, 491, 819, 903, 947
MboI GATC 5 cut(s) 370, 489, 817, 901, 945
MboII GAAGA 9 cut(s) 67, 113, 188, 235, 440, 589, 896, 896, 974
MflI RGATCY 2 cut(s) 370, 901
MluCI AATT 3 cut(s) 48, 763, 797
MlyI GAGTC 1 cut(s) 656
MmeI TCCRAC 1 cut(s) 879
MnlI CCTC 7 cut(s) 159, 330, 562, 651, 731, 880, 990
MseI TTAA 4 cut(s) 21, 146, 654, 660
MslI CAYNNNNRTG 1 cut(s) 998
MspI CCGG 4 cut(s) 82, 152, 159, 397
MspR9I CCNGG 2 cut(s) 375, 398
Mva1269I GAATGC 1 cut(s) 555
MvaI CCWGG 1 cut(s) 375
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 3 cut(s) 301, 331, 552
NciI CCSGG 1 cut(s) 398
NdeII GATC 5 cut(s) 370, 489, 817, 901, 945
NlaIII CATG 2 cut(s) 299, 668
NlaIV GGNNCC 3 cut(s) 189, 231, 806
NmuCI GTSAC 1 cut(s) 415
OliI CACNNNNGTG 1 cut(s) 998
PaqCI CACCTGC 1 cut(s) 786
PauI GCGCGC 1 cut(s) 107
PciSI GCTCTTC 1 cut(s) 453
PctI GAATGC 1 cut(s) 555
PfeI GAWTC 2 cut(s) 194, 929
PfoI TCCNGGA 1 cut(s) 373
PinAI ACCGGT 1 cut(s) 158
PkrI GCNGC 4 cut(s) 113, 327, 564, 716
PleI GAGTC 1 cut(s) 655
PpsI GAGTC 1 cut(s) 655
PpuMI RGGWCCY 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 373
PspEI GGTNACC 1 cut(s) 415
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 3 cut(s) 189, 231, 806
PspPI GGNCC 3 cut(s) 187, 230, 732
PspPPI RGGWCCY 1 cut(s) 187
PsuI RGATCY 2 cut(s) 370, 901
PteI GCGCGC 1 cut(s) 107
RsaI GTAC 2 cut(s) 137, 721
RsaNI GTAC 2 cut(s) 136, 720
RseI CAYNNNNRTG 1 cut(s) 998
SapI GCTCTTC 1 cut(s) 453
SaqAI TTAA 4 cut(s) 21, 146, 654, 660
SatI GCNGC 4 cut(s) 112, 326, 563, 715
Sau3AI GATC 5 cut(s) 370, 489, 817, 901, 945
Sau96I GGNCC 3 cut(s) 187, 230, 732
ScaI AGTACT 1 cut(s) 721
SchI GAGTC 1 cut(s) 656
ScrFI CCNGG 2 cut(s) 375, 398
SfaNI GCATC 2 cut(s) 25, 977
SinI GGWCC 3 cut(s) 187, 230, 732
SmiMI CAYNNNNRTG 1 cut(s) 998
SpeI ACTAGT 1 cut(s) 722
Sse9I AATT 3 cut(s) 48, 763, 797
SsiI CCGC 3 cut(s) 273, 553, 562
SspI AATATT 2 cut(s) 69, 427
SspMI CTAG 1 cut(s) 723
StyD4I CCNGG 2 cut(s) 373, 396
StyI CCWWGG 1 cut(s) 86
TaaI ACNGT 1 cut(s) 132
TaiI ACGT 1 cut(s) 126
TaqII GACCGA 2 cut(s) 247, 720
TasI AATT 3 cut(s) 48, 763, 797
TatI WGTACW 2 cut(s) 135, 719
TauI GCSGC 1 cut(s) 565
TfiI GAWTC 2 cut(s) 194, 929
Tru1I TTAA 4 cut(s) 21, 146, 654, 660
Tru9I TTAA 4 cut(s) 21, 146, 654, 660
TscAI CASTG 2 cut(s) 177, 499
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 3 cut(s) 111, 325, 714
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 5 cut(s) 331, 488, 668, 681, 942
TspGWI ACGGA 1 cut(s) 760
TspRI CASTG 2 cut(s) 177, 499
VpaK11BI GGWCC 3 cut(s) 187, 230, 732
XapI RAATTY 1 cut(s) 48
XspI CTAG 1 cut(s) 723
ZrmI AGTACT 1 cut(s) 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.