FvH4_6g36570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014616
Physical Location & Seq
Forward (+)
28800871 .. 28802750
1880 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36570.t1

Sequence Viewer

Length: 969 bp
ATGGGACAAGGCAAAGAAGTACTAAAGACCAAAACTGAGGATGCCCAAGTTGAAATCCAGGAGAGAGGGGAGATATTCTTCTTTTACAGGCCAAAGGTGAATAAAGAAGAAGCTCACAGTCCAGACGATGTGCAACGTTTGTACGTTGTTTTGAGGCCAGAGTCTGGTGAGAGGTCAATCGAAGAGAAGCAAGACGCGGATTCAGGAAAGGAAGGGGCAAAGAGGAAGGGGTCAGATATTGGGGATGAAGGAGGTTCTGGTGGTAGTGAAGGGGAAGGTGGACATGGGAAGCAGGAGGTGAATATCGAGAAGCAACCATTGCTGAGGTTCATAGTGATGGGAAGGAAAAGCCTTCCTGATCCAGGCAAGAAGAGTAGACCTTACTGGGGTTTCGTGGAGTTGGTCACAACAAATATAGATGATGTCAAGTCTTCCCTTCAGGAAGAGGAGTATGATACTAAAACCAAAGGACACAGACATACATCAGCAGCAAGGGCACTTGGAGAAGGCATTTATCGTATCTTGAGGCATAAAGAGGGGAAGAAGAAACCACACTCTCATTTGATCTACAAGCTTGAGTTTCCACCTGAAGATGAGTACAATGAGCCTCAGGAATCGCTAAACATTAAACATGAAGGCTCATTTCATATTCAAATAAAAAACCCAGAGCAACATGGCAGCAGTACTTCACAGTACAGAGGGCTGCAGAGCAAGCGGAAGGCAGTGTTTCCTGCTCACTTACAAGGCCAGTTTGGGAAGCTACGGTATCACCCGGCTGATCCACCTGATTTTTTGAACTACGAAGGATGCGAGTTCTTGCTCATATCAGCTTCGGATAATATAGAAGAGGAATTGGGCTTGGAGCTTCAGACCGAGGAGGTAGAAGCTGATGAGTCTTGTTCTGATTTGGTCAAGACTTTTGGGGAGACTGCATCTACTACCCCTCTTCTGAAAGGCGCTTGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

323

Amino Acids

36.22

Weight (kDa)

5.49

Isoelectric Point (pI)

57.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014616)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16770 AT1G16770 AT1G16770
fragaria_vesca FvH4_6g36570
malus_domestica MD17G1161100.v1.1
prunus_persica Prupe.3G025300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0149061
rosa_laevigata RLG00000020365
rosa_multiflora Rmu_sc0007360.1_g000002
rosa_roxburghii Rroxscaffold_2G00098510
rosa_rugosa Rorug02G0408900 Rorug02G0409000
rosa_samantha Rh2AG468300 Rh2BG481000 Rh2CG454500 Rh2DG489800
rosa_wichuraiana Rw2G038140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 164
AccI GTMKAC 1 cut(s) 376
AccII CGCG 1 cut(s) 197
AciI CCGC 2 cut(s) 197, 715
AclI AACGTT 1 cut(s) 136
AclWI GGATC 2 cut(s) 353, 773
AcuI CTGAAG 3 cut(s) 422, 609, 851
AfaI GTAC 5 cut(s) 21, 143, 599, 685, 695
AfiI CCNNNNNNNGG 3 cut(s) 164, 362, 386
AgsI TTSAA 3 cut(s) 53, 653, 796
AjnI CCWGG 2 cut(s) 57, 361
AluBI AGCT 6 cut(s) 113, 574, 760, 830, 865, 887
AluI AGCT 6 cut(s) 113, 574, 760, 830, 865, 887
Alw26I GTCTC 1 cut(s) 920
AlwI GGATC 2 cut(s) 353, 773
AlwNI CAGNNNCTG 1 cut(s) 164
AoxI GGCC 3 cut(s) 89, 155, 745
ApeKI GCWGC 3 cut(s) 488, 678, 703
AspLEI GCGC 1 cut(s) 959
AsuC2I CCSGG 1 cut(s) 773
AsuHPI GGTGA 4 cut(s) 109, 179, 310, 761
AxyI CCTNAGG 1 cut(s) 609
BaeGI GKGCMC 1 cut(s) 499
BbsI GAAGAC 1 cut(s) 423
BbvCI CCTCAGC 1 cut(s) 323
BbvI GCAGC 3 cut(s) 500, 690, 690
BccI CCATC 1 cut(s) 331
BciT130I CCWGG 2 cut(s) 59, 363
BcnI CCSGG 1 cut(s) 773
BcoDI GTCTC 1 cut(s) 920
BfmI CTRYAG 1 cut(s) 704
BfoI RGCGCY 1 cut(s) 960
BisI GCNGC 3 cut(s) 489, 679, 704
BlsI GCNGC 3 cut(s) 490, 680, 705
BmcAI AGTACT 2 cut(s) 21, 685
Bme1390I CCNGG 3 cut(s) 59, 363, 773
BmrFI CCNGG 3 cut(s) 59, 363, 773
BmrI ACTGGG 1 cut(s) 394
BmsI GCATC 3 cut(s) 31, 797, 941
BmuI ACTGGG 1 cut(s) 394
BpiI GAAGAC 1 cut(s) 423
Bpu10I CCTNAGC 1 cut(s) 323
BpuEI CTTGAG 2 cut(s) 544, 596
BpuMI CCSGG 1 cut(s) 773
BsaJI CCNNGG 1 cut(s) 873
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 362, 386
Bse1I ACTGG 2 cut(s) 389, 748
Bse21I CCTNAGG 1 cut(s) 609
Bse3DI GCAATG 1 cut(s) 317
BseBI CCWGG 2 cut(s) 59, 363
BseDI CCNNGG 1 cut(s) 873
BseGI GGATG 3 cut(s) 46, 250, 812
BseLI CCNNNNNNNGG 3 cut(s) 164, 362, 386
BseMI GCAATG 1 cut(s) 317
BseMII CTCAG 3 cut(s) 27, 314, 623
BseNI ACTGG 2 cut(s) 389, 748
BseRI GAGGAG 2 cut(s) 461, 890
BseSI GKGCMC 1 cut(s) 499
BseXI GCAGC 3 cut(s) 500, 690, 690
Bsh1236I CGCG 1 cut(s) 197
BshFI GGCC 3 cut(s) 91, 157, 747
BsiSI CCGG 1 cut(s) 773
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 3 cut(s) 164, 362, 386
BsmAI GTCTC 1 cut(s) 920
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 3 cut(s) 91, 157, 747
Bsp1286I GDGCHC 1 cut(s) 499
Bsp143I GATC 3 cut(s) 358, 564, 778
BspACI CCGC 2 cut(s) 197, 715
BspANI GGCC 3 cut(s) 91, 157, 747
BspCNI CTCAG 3 cut(s) 28, 315, 622
BspFNI CGCG 1 cut(s) 197
BspMAI CTGCAG 1 cut(s) 708
BspPI GGATC 2 cut(s) 353, 773
BsrDI GCAATG 1 cut(s) 317
BsrI ACTGG 2 cut(s) 389, 748
BssECI CCNNGG 1 cut(s) 873
BssMI GATC 3 cut(s) 358, 564, 778
Bst2UI CCWGG 2 cut(s) 59, 363
Bst4CI ACNGT 3 cut(s) 119, 693, 765
Bst6I CTCTTC 5 cut(s) 177, 365, 438, 840, 951
BstAPI GCANNNNNTGC 1 cut(s) 319
BstC8I GCNNGC 1 cut(s) 713
BstDEI CTNAG 3 cut(s) 36, 323, 609
BstENI CCTNNNNNAGG 1 cut(s) 360
BstF5I GGATG 3 cut(s) 46, 250, 812
BstFNI CGCG 1 cut(s) 197
BstH2I RGCGCY 1 cut(s) 960
BstHHI GCGC 1 cut(s) 959
BstKTI GATC 3 cut(s) 361, 567, 781
BstMAI GTCTC 1 cut(s) 920
BstMBI GATC 3 cut(s) 358, 564, 778
BstMWI GCNNNNNNNGC 3 cut(s) 319, 494, 712
BstNI CCWGG 2 cut(s) 59, 363
BstSCI CCNGG 3 cut(s) 57, 361, 771
BstSFI CTRYAG 1 cut(s) 704
BstSLI GKGCMC 1 cut(s) 499
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 3 cut(s) 500, 690, 690
BstV2I GAAGAC 1 cut(s) 423
Bsu36I CCTNAGG 1 cut(s) 609
BsuRI GGCC 3 cut(s) 91, 157, 747
BtsCI GGATG 3 cut(s) 46, 250, 812
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 1 cut(s) 729
Cac8I GCNNGC 1 cut(s) 713
CaiI CAGNNNCTG 1 cut(s) 164
CfoI GCGC 1 cut(s) 959
CseI GACGC 1 cut(s) 203
Csp6I GTAC 5 cut(s) 20, 142, 598, 684, 694
CviAII CATG 3 cut(s) 284, 632, 674
CviQI GTAC 5 cut(s) 20, 142, 598, 684, 694
DdeI CTNAG 3 cut(s) 36, 323, 609
DpnI GATC 3 cut(s) 360, 566, 780
DpnII GATC 3 cut(s) 358, 564, 778
Eam1104I CTCTTC 5 cut(s) 177, 365, 438, 840, 951
EarI CTCTTC 5 cut(s) 177, 365, 438, 840, 951
Eco57I CTGAAG 3 cut(s) 422, 609, 851
Eco81I CCTNAGG 1 cut(s) 609
EcoNI CCTNNNNNAGG 1 cut(s) 360
EcoRII CCWGG 2 cut(s) 57, 361
FaeI CATG 3 cut(s) 287, 635, 677
FaqI GGGAC 1 cut(s) 18
FatI CATG 3 cut(s) 283, 631, 673
FblI GTMKAC 1 cut(s) 376
Fnu4HI GCNGC 3 cut(s) 489, 679, 704
FokI GGATG 3 cut(s) 53, 257, 819
Fsp4HI GCNGC 3 cut(s) 489, 679, 704
GlaI GCGC 1 cut(s) 958
GluI GCNGC 3 cut(s) 489, 679, 704
HaeII RGCGCY 1 cut(s) 960
HaeIII GGCC 3 cut(s) 91, 157, 747
HapII CCGG 1 cut(s) 773
HgaI GACGC 1 cut(s) 203
HhaI GCGC 1 cut(s) 959
Hin1II CATG 3 cut(s) 287, 635, 677
Hin6I GCGC 1 cut(s) 957
HinP1I GCGC 1 cut(s) 957
HindIII AAGCTT 1 cut(s) 572
HinfI GANTC 4 cut(s) 161, 200, 614, 893
HpaII CCGG 1 cut(s) 773
HphI GGTGA 4 cut(s) 109, 179, 310, 761
Hpy166II GTNNAC 2 cut(s) 281, 377
Hpy188I TCNGA 5 cut(s) 235, 835, 870, 904, 951
Hpy188III TCNNGA 8 cut(s) 122, 204, 307, 356, 440, 523, 611, 913
Hpy8I GTNNAC 2 cut(s) 281, 377
HpyCH4III ACNGT 3 cut(s) 119, 693, 765
HpyCH4IV ACGT 2 cut(s) 136, 144
HpyCH4V TGCA 3 cut(s) 133, 706, 932
HpyF10VI GCNNNNNNNGC 3 cut(s) 319, 494, 712
HpyF3I CTNAG 3 cut(s) 36, 323, 609
HpySE526I ACGT 2 cut(s) 136, 144
Hsp92II CATG 3 cut(s) 287, 635, 677
HspAI GCGC 1 cut(s) 957
Kzo9I GATC 3 cut(s) 358, 564, 778
LmnI GCTCC 1 cut(s) 862
Lsp1109I GCAGC 3 cut(s) 500, 690, 690
LweI GCATC 3 cut(s) 31, 797, 941
MaeII ACGT 2 cut(s) 136, 144
MaeIII GTNAC 1 cut(s) 403
MalI GATC 3 cut(s) 360, 566, 780
MboI GATC 3 cut(s) 358, 564, 778
MhlI GDGCHC 1 cut(s) 499
MluCI AATT 1 cut(s) 851
MlyI GAGTC 2 cut(s) 170, 902
MseI TTAA 1 cut(s) 627
MslI CAYNNNNRTG 1 cut(s) 335
MspI CCGG 1 cut(s) 773
MspR9I CCNGG 3 cut(s) 59, 363, 773
MvaI CCWGG 2 cut(s) 59, 363
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 3 cut(s) 319, 494, 712
NciI CCSGG 1 cut(s) 773
NdeII GATC 3 cut(s) 358, 564, 778
NlaIII CATG 3 cut(s) 287, 635, 677
NmuCI GTSAC 1 cut(s) 403
PcsI WCGNNNNNNNCGW 1 cut(s) 807
PfeI GAWTC 2 cut(s) 200, 614
PflMI CCANNNNNTGG 1 cut(s) 164
PfoI TCCNGGA 1 cut(s) 57
PkrI GCNGC 3 cut(s) 490, 680, 705
PleI GAGTC 2 cut(s) 169, 901
PpsI GAGTC 2 cut(s) 169, 901
Psp1406I AACGTT 1 cut(s) 136
Psp6I CCWGG 2 cut(s) 57, 361
PspGI CCWGG 2 cut(s) 57, 361
PstI CTGCAG 1 cut(s) 708
PstNI CAGNNNCTG 1 cut(s) 164
RsaI GTAC 5 cut(s) 21, 143, 599, 685, 695
RsaNI GTAC 5 cut(s) 20, 142, 598, 684, 694
RseI CAYNNNNRTG 1 cut(s) 335
SaqAI TTAA 1 cut(s) 627
SatI GCNGC 3 cut(s) 489, 679, 704
Sau3AI GATC 3 cut(s) 358, 564, 778
ScaI AGTACT 2 cut(s) 21, 685
SchI GAGTC 2 cut(s) 170, 902
ScrFI CCNGG 3 cut(s) 59, 363, 773
SduI GDGCHC 1 cut(s) 499
SfaNI GCATC 3 cut(s) 31, 797, 941
SfcI CTRYAG 1 cut(s) 704
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 2 cut(s) 523, 575
SmoI CTYRAG 2 cut(s) 523, 575
Sse9I AATT 1 cut(s) 851
SsiI CCGC 2 cut(s) 197, 715
StyD4I CCNGG 3 cut(s) 57, 361, 771
TaaI ACNGT 3 cut(s) 119, 693, 765
TaiI ACGT 2 cut(s) 139, 147
TaqI TCGA 2 cut(s) 180, 306
TaqII GACCGA 1 cut(s) 887
TasI AATT 1 cut(s) 851
TatI WGTACW 4 cut(s) 19, 597, 683, 693
TfiI GAWTC 2 cut(s) 200, 614
Tru1I TTAA 1 cut(s) 627
Tru9I TTAA 1 cut(s) 627
TscAI CASTG 1 cut(s) 729
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 3 cut(s) 488, 678, 703
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 4 cut(s) 261, 319, 635, 648
TspRI CASTG 1 cut(s) 729
Van91I CCANNNNNTGG 1 cut(s) 164
XagI CCTNNNNNAGG 1 cut(s) 360
XmiI GTMKAC 1 cut(s) 376
ZrmI AGTACT 2 cut(s) 21, 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.