Rroxscaffold_2G00098510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014616
Physical Location & Seq
Reverse (-)
19742709 .. 19745835
3127 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00098510.1

Sequence Viewer

Length: 1014 bp
ATGGATCCTTGCTTGAAGCTTGAGTTTTTCGCTAGTGATATACGACCCAACCTCTTGAACTCCACCAGTATTTTCATGCCTCAATTGATCCGGAGTGATGTACTCTTTCTTGGAGACGGTGTGCGAAGCTCGAAGCCAAAGGTGAACAAAGAAGAGGCTCACAGTCCAGACGATGTGCAACGTTTGTACATAGTTTTGAGGCCAGAGTCTGGTGAGAGATCAATCGAAGAGAAGCAAGACCCAGATTCAGGAAAAGAAGGGGCAAAGAGGAAGGGGTCAGATTCTGGGGATGAAGGAGGTTCTGGTGGTAGTGAAAGTGAAGGTGGACATGGGACGCAGGAGGTGAACATTGAGAAGCAACCATTGCTGAGGTTCATAGTGATGGGAAGGAAAAGCCTTCCTGATCCAAGCAAGAAGAGTAGACCTTATTGGGGCTTTGTGGAGTTGGTCACCACAAATATAGATGATGTCAAGTCTTCCCTGCAAGGAGAGGAGCATGATACTAAAACCAGAGGACACAGACATACATCAGCAGCAAGGGCACTTGGAGAAGGCATTTATCGCATTCTAAGGCATAAAGAGGGAAAGAAGAAACCCCACACTCATTTGATCTACAAGCTTGAGTTTCCACCTGAAGACGAGTGCAATGAGCCTCAGGAGTCGCTAAACATTAAGCATGAAGGCTCATTTCATATTCAAATAAAGAACCCAGAGCACCATGGCAGCAGTACTTCACAGTACAGAGGGATGCAGAGCAAGCGCAGGGCAGTGTTTCCTGCTCACTTACAAGGCCAATTCGGGAAGCTACGGTTCCACCCGGCTGATCCACCAGACTTTTTGAACTACGAAGGTTGTGAATTCTTGCTCATATCGGCTTCGGATCATATAGAAGAGAAGTTGGGGTTAGAGCTTCAAACTGAGGAGGTGGAAGCTGATGAATCGTGTTCTGATTTGATCAAGACTTTTGGGGAGACTGCATCTATTACTCCTCTTCTGAAAGGCACTTGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

337

Amino Acids

37.76

Weight (kDa)

5.87

Isoelectric Point (pI)

55.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014616)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16770 AT1G16770 AT1G16770
fragaria_vesca FvH4_6g36570
malus_domestica MD17G1161100.v1.1
prunus_persica Prupe.3G025300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0149061
rosa_laevigata RLG00000020365
rosa_multiflora Rmu_sc0007360.1_g000002
rosa_roxburghii Rroxscaffold_2G00098510
rosa_rugosa Rorug02G0408900 Rorug02G0409000
rosa_samantha Rh2AG468300 Rh2BG481000 Rh2CG454500 Rh2DG489800
rosa_wichuraiana Rw2G038140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 209
AccI GTMKAC 1 cut(s) 421
AccIII TCCGGA 1 cut(s) 90
AclI AACGTT 1 cut(s) 181
AclWI GGATC 5 cut(s) 12, 82, 398, 818, 888
AcsI RAATTY 1 cut(s) 857
AcuI CTGAAG 1 cut(s) 654
AfaI GTAC 4 cut(s) 102, 188, 730, 740
AfiI CCNNNNNNNGG 3 cut(s) 209, 248, 431
AgsI TTSAA 5 cut(s) 16, 58, 698, 841, 914
AluBI AGCT 6 cut(s) 19, 129, 619, 805, 910, 932
AluI AGCT 6 cut(s) 19, 129, 619, 805, 910, 932
Alw21I GWGCWC 1 cut(s) 717
Alw26I GTCTC 2 cut(s) 108, 965
AlwI GGATC 5 cut(s) 12, 82, 398, 818, 888
AlwNI CAGNNNCTG 2 cut(s) 209, 284
Aor13HI TCCGGA 1 cut(s) 90
AoxI GGCC 2 cut(s) 200, 790
ApeKI GCWGC 2 cut(s) 533, 723
ApoI RAATTY 1 cut(s) 857
AspLEI GCGC 1 cut(s) 762
AsuC2I CCSGG 1 cut(s) 818
AsuHPI GGTGA 4 cut(s) 154, 224, 355, 442
AxyI CCTNAGG 1 cut(s) 654
BaeGI GKGCMC 1 cut(s) 544
BamHI GGATCC 1 cut(s) 4
BbsI GAAGAC 2 cut(s) 468, 642
Bbv12I GWGCWC 1 cut(s) 717
BbvCI CCTCAGC 1 cut(s) 368
BbvI GCAGC 2 cut(s) 545, 735
BccI CCATC 1 cut(s) 376
BclI TGATCA 1 cut(s) 954
BcnI CCSGG 1 cut(s) 818
BcoDI GTCTC 2 cut(s) 108, 965
BfaI CTAG 1 cut(s) 33
BisI GCNGC 2 cut(s) 534, 724
BlsI GCNGC 2 cut(s) 535, 725
BmcAI AGTACT 1 cut(s) 730
Bme1390I CCNGG 1 cut(s) 818
BmiI GGNNCC 2 cut(s) 6, 812
BmrFI CCNGG 1 cut(s) 818
BmsI GCATC 2 cut(s) 738, 986
BpiI GAAGAC 2 cut(s) 468, 642
Bpu10I CCTNAGC 1 cut(s) 368
BpuEI CTTGAG 2 cut(s) 41, 641
BpuMI CCSGG 1 cut(s) 818
BsaJI CCNNGG 1 cut(s) 718
BsaWI WCCGGW 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 3 cut(s) 209, 248, 431
Bse1I ACTGG 1 cut(s) 66
Bse21I CCTNAGG 1 cut(s) 654
Bse3DI GCAATG 2 cut(s) 362, 652
BseAI TCCGGA 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 718
BseGI GGATG 2 cut(s) 295, 753
BseLI CCNNNNNNNGG 3 cut(s) 209, 248, 431
BseMI GCAATG 2 cut(s) 362, 652
BseMII CTCAG 3 cut(s) 359, 668, 909
BseNI ACTGG 1 cut(s) 66
BseRI GAGGAG 3 cut(s) 506, 935, 978
BseSI GKGCMC 1 cut(s) 544
BseXI GCAGC 2 cut(s) 545, 735
BshFI GGCC 2 cut(s) 202, 792
BsiHKAI GWGCWC 1 cut(s) 717
BsiSI CCGG 2 cut(s) 91, 818
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 3 cut(s) 209, 248, 431
BsmAI GTCTC 2 cut(s) 108, 965
BsmBI CGTCTC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 346
BsmI GAATGC 1 cut(s) 564
BsnI GGCC 2 cut(s) 202, 792
Bsp1286I GDGCHC 2 cut(s) 544, 717
Bsp13I TCCGGA 1 cut(s) 90
Bsp1407I TGTACA 1 cut(s) 186
Bsp143I GATC 8 cut(s) 4, 87, 218, 403, 609, 823, 880, 954
Bsp19I CCATGG 1 cut(s) 718
BspANI GGCC 2 cut(s) 202, 792
BspCNI CTCAG 3 cut(s) 360, 667, 910
BspEI TCCGGA 1 cut(s) 90
BspLI GGNNCC 2 cut(s) 6, 812
BspPI GGATC 5 cut(s) 12, 82, 398, 818, 888
BsrDI GCAATG 2 cut(s) 362, 652
BsrGI TGTACA 1 cut(s) 186
BsrI ACTGG 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 718
BssMI GATC 8 cut(s) 4, 87, 218, 403, 609, 823, 880, 954
BssT1I CCWWGG 1 cut(s) 718
Bst4CI ACNGT 4 cut(s) 119, 164, 738, 810
Bst6I CTCTTC 5 cut(s) 147, 222, 410, 885, 996
BstAPI GCANNNNNTGC 1 cut(s) 364
BstAUI TGTACA 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 758
BstDEI CTNAG 4 cut(s) 368, 569, 654, 918
BstDSI CCRYGG 1 cut(s) 718
BstEII GGTNACC 1 cut(s) 448
BstF5I GGATG 2 cut(s) 295, 753
BstHHI GCGC 1 cut(s) 762
BstKTI GATC 8 cut(s) 7, 90, 221, 406, 612, 826, 883, 957
BstMAI GTCTC 2 cut(s) 108, 965
BstMBI GATC 8 cut(s) 4, 87, 218, 403, 609, 823, 880, 954
BstMWI GCNNNNNNNGC 4 cut(s) 364, 539, 561, 757
BstPI GGTNACC 1 cut(s) 448
BstSCI CCNGG 1 cut(s) 816
BstSLI GKGCMC 1 cut(s) 544
BstV1I GCAGC 2 cut(s) 545, 735
BstV2I GAAGAC 2 cut(s) 468, 642
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu36I CCTNAGG 1 cut(s) 654
BsuRI GGCC 2 cut(s) 202, 792
BtgI CCRYGG 1 cut(s) 718
BtsCI GGATG 2 cut(s) 295, 753
BtsI GCAGTG 1 cut(s) 774
BtsIMutI CAGTG 1 cut(s) 774
Cac8I GCNNGC 1 cut(s) 758
CaiI CAGNNNCTG 2 cut(s) 209, 284
CfoI GCGC 1 cut(s) 762
CseI GACGC 1 cut(s) 343
Csp6I GTAC 4 cut(s) 101, 187, 729, 739
CviAII CATG 5 cut(s) 76, 329, 497, 677, 719
CviQI GTAC 4 cut(s) 101, 187, 729, 739
DdeI CTNAG 4 cut(s) 368, 569, 654, 918
DpnI GATC 8 cut(s) 6, 89, 220, 405, 611, 825, 882, 956
DpnII GATC 8 cut(s) 4, 87, 218, 403, 609, 823, 880, 954
Eam1104I CTCTTC 5 cut(s) 147, 222, 410, 885, 996
EarI CTCTTC 5 cut(s) 147, 222, 410, 885, 996
Eco130I CCWWGG 1 cut(s) 718
Eco57I CTGAAG 1 cut(s) 654
Eco81I CCTNAGG 1 cut(s) 654
Eco91I GGTNACC 1 cut(s) 448
EcoO65I GGTNACC 1 cut(s) 448
EcoRI GAATTC 1 cut(s) 857
EcoT14I CCWWGG 1 cut(s) 718
ErhI CCWWGG 1 cut(s) 718
Esp3I CGTCTC 1 cut(s) 108
FaeI CATG 5 cut(s) 79, 332, 500, 680, 722
FaqI GGGAC 1 cut(s) 346
FatI CATG 5 cut(s) 75, 328, 496, 676, 718
FbaI TGATCA 1 cut(s) 954
FblI GTMKAC 1 cut(s) 421
Fnu4HI GCNGC 2 cut(s) 534, 724
FokI GGATG 2 cut(s) 302, 760
Fsp4HI GCNGC 2 cut(s) 534, 724
FspBI CTAG 1 cut(s) 33
GlaI GCGC 1 cut(s) 761
GluI GCNGC 2 cut(s) 534, 724
HaeIII GGCC 2 cut(s) 202, 792
HapII CCGG 2 cut(s) 91, 818
HgaI GACGC 1 cut(s) 343
HhaI GCGC 1 cut(s) 762
Hin1II CATG 5 cut(s) 79, 332, 500, 680, 722
Hin6I GCGC 1 cut(s) 760
HinP1I GCGC 1 cut(s) 760
HindIII AAGCTT 2 cut(s) 17, 617
HinfI GANTC 5 cut(s) 206, 245, 281, 659, 938
HpaII CCGG 2 cut(s) 91, 818
HphI GGTGA 4 cut(s) 154, 224, 355, 442
Hpy166II GTNNAC 4 cut(s) 145, 326, 346, 422
Hpy188I TCNGA 4 cut(s) 280, 880, 949, 996
Hpy188III TCNNGA 8 cut(s) 55, 91, 167, 249, 401, 656, 799, 958
Hpy8I GTNNAC 4 cut(s) 145, 326, 346, 422
HpyAV CCTTC 9 cut(s) 251, 265, 287, 314, 381, 407, 545, 674, 842
HpyCH4III ACNGT 4 cut(s) 119, 164, 738, 810
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 5 cut(s) 178, 484, 645, 751, 977
HpyF10VI GCNNNNNNNGC 4 cut(s) 364, 539, 561, 757
HpyF3I CTNAG 4 cut(s) 368, 569, 654, 918
HpySE526I ACGT 1 cut(s) 181
Hsp92II CATG 5 cut(s) 79, 332, 500, 680, 722
HspAI GCGC 1 cut(s) 760
Kpn2I TCCGGA 1 cut(s) 90
Ksp22I TGATCA 1 cut(s) 954
Kzo9I GATC 8 cut(s) 4, 87, 218, 403, 609, 823, 880, 954
LmnI GCTCC 1 cut(s) 493
Lsp1109I GCAGC 2 cut(s) 545, 735
LweI GCATC 2 cut(s) 738, 986
MaeI CTAG 1 cut(s) 33
MaeII ACGT 1 cut(s) 181
MaeIII GTNAC 1 cut(s) 448
MalI GATC 8 cut(s) 6, 89, 220, 405, 611, 825, 882, 956
MboI GATC 8 cut(s) 4, 87, 218, 403, 609, 823, 880, 954
MboII GAAGA 8 cut(s) 164, 239, 427, 468, 601, 647, 902, 983
MfeI CAATTG 1 cut(s) 83
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 544, 717
MluCI AATT 3 cut(s) 83, 794, 857
MlyI GAGTC 2 cut(s) 215, 668
MroI TCCGGA 1 cut(s) 90
MseI TTAA 1 cut(s) 672
MslI CAYNNNNRTG 1 cut(s) 380
MspI CCGG 2 cut(s) 91, 818
MspR9I CCNGG 1 cut(s) 818
MunI CAATTG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 564
MwoI GCNNNNNNNGC 4 cut(s) 364, 539, 561, 757
NciI CCSGG 1 cut(s) 818
NcoI CCATGG 1 cut(s) 718
NdeII GATC 8 cut(s) 4, 87, 218, 403, 609, 823, 880, 954
NlaIII CATG 5 cut(s) 79, 332, 500, 680, 722
NlaIV GGNNCC 2 cut(s) 6, 812
NmuCI GTSAC 1 cut(s) 448
PctI GAATGC 1 cut(s) 564
PfeI GAWTC 3 cut(s) 245, 281, 938
PflMI CCANNNNNTGG 1 cut(s) 209
PkrI GCNGC 2 cut(s) 535, 725
PleI GAGTC 2 cut(s) 214, 667
PpsI GAGTC 2 cut(s) 214, 667
Psp1406I AACGTT 1 cut(s) 181
PspEI GGTNACC 1 cut(s) 448
PspN4I GGNNCC 2 cut(s) 6, 812
PstNI CAGNNNCTG 2 cut(s) 209, 284
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 4 cut(s) 102, 188, 730, 740
RsaNI GTAC 4 cut(s) 101, 187, 729, 739
RseI CAYNNNNRTG 1 cut(s) 380
SaqAI TTAA 1 cut(s) 672
SatI GCNGC 2 cut(s) 534, 724
Sau3AI GATC 8 cut(s) 4, 87, 218, 403, 609, 823, 880, 954
ScaI AGTACT 1 cut(s) 730
SchI GAGTC 2 cut(s) 215, 668
ScrFI CCNGG 1 cut(s) 818
SduI GDGCHC 2 cut(s) 544, 717
SfaNI GCATC 2 cut(s) 738, 986
SmiMI CAYNNNNRTG 1 cut(s) 380
SmlI CTYRAG 2 cut(s) 20, 620
SmoI CTYRAG 2 cut(s) 20, 620
Sse9I AATT 3 cut(s) 83, 794, 857
SspMI CTAG 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 816
StyI CCWWGG 1 cut(s) 718
TaaI ACNGT 4 cut(s) 119, 164, 738, 810
TaiI ACGT 1 cut(s) 184
TaqI TCGA 2 cut(s) 131, 225
TasI AATT 3 cut(s) 83, 794, 857
TatI WGTACW 4 cut(s) 100, 186, 728, 738
TfiI GAWTC 3 cut(s) 245, 281, 938
Tru1I TTAA 1 cut(s) 672
Tru9I TTAA 1 cut(s) 672
TscAI CASTG 1 cut(s) 774
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 2 cut(s) 533, 723
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 6 cut(s) 64, 306, 364, 680, 693, 951
TspRI CASTG 1 cut(s) 774
Van91I CCANNNNNTGG 1 cut(s) 209
XapI RAATTY 1 cut(s) 857
XmiI GTMKAC 1 cut(s) 421
XspI CTAG 1 cut(s) 33
ZrmI AGTACT 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.