Prupe.3G025300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014616
Physical Location & Seq
Reverse (-)
1841946 .. 1843881
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G025300.1

Sequence Viewer

Length: 963 bp
ATGGGACAAGGCGAAGAAGTCAAGACCAGAGCTGATGCCCAAGTTGAAATTCAGGAGAGAGGGGAAATATTCTTCTTCTACAGGCCAAAAGTTAACAAGGAGGAAGCTCACAGCCCAGATGATGTTCAACGTTTGTACATAGTTTTAAGGCCAGAGTCAGGTGAGAGGCCAATTGAGGAGAAGCAAGACCCTGATTCAGGAAAAGAAGGTGCAAAGAAGAAGGGATCAAATCCTGGTGAAAAAGGTTCTGATCGTAGTCAAAGTAGTGAAGGTGGGCATGGAAGGCAGGAAGTGAACATTGAGAAGCAACCATTGCTGAGGTTCATAGTGATGGGAAGGAAAAGCCTTCCTGACCCAAGCAAGAAAGGCAGACCCTATTGGGGTTTTGTTGAGATGGTCACCACAAATATAGATGATGTGAAAACTGCTCTTCAAGGAGAGGAGTATGACACTAAAACCGAAGGGCACAGACACACTTCTGCAGCAAGGGCATTAGGAGAAGGCATATACCGCATTGTGAGGCATAAGGAGGGGAAGAAGAAACCCCACACTCATTTGATTTACAAGCTTGAGTTCCCACCAGAAGATGAGAACAATGAGCCTCAAGAGTCACTTAATATTAAACATGAAGGCTCATTTCATATTCAAATAAAGAACCCGGATCAACATGGCAGCAGCAGTACTTCTCAGTTCAGAGGGTTACAGAACAACCGCAGGGCTATGTTTCCTGCCCACCTGCAAGGCCAGTTTGGGAATTTAAGGTACTGCCCAGCTGATCCACCTGACTTCTTGAACTATGAAGGATGTGAGTTCTTGCTCATATCGGCTTCGGATGATATAGAAGAGGAATTAGGGCTGGAGCTGCAGACAGAGGGGGAAGCAGTTGAATCTTGTTCTGATTTGATCAAAACTTTTGGGGAGACTGCATCTACCAGTTCTCTTCTGAGAGGCACCTGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

36.08

Weight (kDa)

5.49

Isoelectric Point (pI)

52.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014616)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16770 AT1G16770 AT1G16770
fragaria_vesca FvH4_6g36570
malus_domestica MD17G1161100.v1.1
prunus_persica Prupe.3G025300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0149061
rosa_laevigata RLG00000020365
rosa_multiflora Rmu_sc0007360.1_g000002
rosa_roxburghii Rroxscaffold_2G00098510
rosa_rugosa Rorug02G0408900 Rorug02G0409000
rosa_samantha Rh2AG468300 Rh2BG481000 Rh2CG454500 Rh2DG489800
rosa_wichuraiana Rw2G038140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 744
Acc36I ACCTGC 1 cut(s) 744
AccB1I GGYRCC 1 cut(s) 950
AciI CCGC 2 cut(s) 511, 712
AclI AACGTT 1 cut(s) 130
AclWI GGATC 3 cut(s) 232, 669, 770
AcsI RAATTY 2 cut(s) 48, 754
AfaI GTAC 3 cut(s) 137, 682, 764
AfiI CCNNNNNNNGG 3 cut(s) 158, 197, 380
AgsI TTSAA 6 cut(s) 47, 128, 434, 647, 793, 887
AjnI CCWGG 2 cut(s) 232, 953
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
AluBI AGCT 5 cut(s) 32, 107, 568, 773, 862
AluI AGCT 5 cut(s) 32, 107, 568, 773, 862
Alw26I GTCTC 1 cut(s) 914
AlwI GGATC 3 cut(s) 232, 669, 770
AoxI GGCC 4 cut(s) 83, 149, 167, 742
ApeKI GCWGC 4 cut(s) 482, 672, 675, 862
ApoI RAATTY 2 cut(s) 48, 754
AsuC2I CCSGG 1 cut(s) 659
AsuHPI GGTGA 3 cut(s) 173, 248, 391
BaeGI GKGCMC 1 cut(s) 468
BanI GGYRCC 1 cut(s) 950
BbvCI CCTCAGC 1 cut(s) 317
BbvI GCAGC 4 cut(s) 494, 684, 687, 849
BccI CCATC 2 cut(s) 325, 388
BciT130I CCWGG 2 cut(s) 234, 955
BclI TGATCA 1 cut(s) 903
BcnI CCSGG 1 cut(s) 659
BcoDI GTCTC 1 cut(s) 914
BfmI CTRYAG 3 cut(s) 79, 480, 863
BfuAI ACCTGC 1 cut(s) 744
BisI GCNGC 4 cut(s) 483, 673, 676, 863
BlsI GCNGC 4 cut(s) 484, 674, 677, 864
BmcAI AGTACT 1 cut(s) 682
Bme1390I CCNGG 3 cut(s) 234, 659, 955
BmiI GGNNCC 1 cut(s) 952
BmrFI CCNGG 3 cut(s) 234, 659, 955
BmsI GCATC 2 cut(s) 25, 935
BpmI CTGGAG 1 cut(s) 878
Bpu10I CCTNAGC 1 cut(s) 317
BpuEI CTTGAG 2 cut(s) 588, 590
BpuMI CCSGG 1 cut(s) 659
BsaJI CCNNGG 1 cut(s) 954
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 197, 380
Bse1I ACTGG 2 cut(s) 745, 933
Bse3DI GCAATG 1 cut(s) 311
BseBI CCWGG 2 cut(s) 234, 955
BseDI CCNNGG 1 cut(s) 954
BseGI GGATG 2 cut(s) 809, 838
BseLI CCNNNNNNNGG 3 cut(s) 158, 197, 380
BseMI GCAATG 1 cut(s) 311
BseMII CTCAG 3 cut(s) 308, 701, 935
BseNI ACTGG 2 cut(s) 745, 933
BseRI GAGGAG 2 cut(s) 191, 455
BseSI GKGCMC 1 cut(s) 468
BseXI GCAGC 4 cut(s) 494, 684, 687, 849
BseYI CCCAGC 1 cut(s) 769
BshFI GGCC 4 cut(s) 85, 151, 169, 744
BshNI GGYRCC 1 cut(s) 950
BsiSI CCGG 1 cut(s) 659
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 3 cut(s) 158, 197, 380
BsmAI GTCTC 1 cut(s) 914
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 4 cut(s) 85, 151, 169, 744
Bsp1286I GDGCHC 1 cut(s) 468
Bsp1407I TGTACA 1 cut(s) 135
Bsp143I GATC 5 cut(s) 224, 250, 661, 775, 903
BspACI CCGC 2 cut(s) 511, 712
BspANI GGCC 4 cut(s) 85, 151, 169, 744
BspCNI CTCAG 3 cut(s) 309, 700, 936
BspLI GGNNCC 1 cut(s) 952
BspMAI CTGCAG 2 cut(s) 484, 867
BspMI ACCTGC 1 cut(s) 744
BspPI GGATC 3 cut(s) 232, 669, 770
BspQI GCTCTTC 1 cut(s) 435
BspT107I GGYRCC 1 cut(s) 950
BsrDI GCAATG 1 cut(s) 311
BsrGI TGTACA 1 cut(s) 135
BsrI ACTGG 2 cut(s) 745, 933
BssECI CCNNGG 1 cut(s) 954
BssMI GATC 5 cut(s) 224, 250, 661, 775, 903
Bst2UI CCWGG 2 cut(s) 234, 955
Bst6I CTCTTC 3 cut(s) 435, 837, 945
BstAPI GCANNNNNTGC 1 cut(s) 313
BstAUI TGTACA 1 cut(s) 135
BstDEI CTNAG 3 cut(s) 317, 687, 944
BstEII GGTNACC 1 cut(s) 397
BstENI CCTNNNNNAGG 1 cut(s) 195
BstF5I GGATG 2 cut(s) 809, 838
BstKTI GATC 5 cut(s) 227, 253, 664, 778, 906
BstMAI GTCTC 1 cut(s) 914
BstMBI GATC 5 cut(s) 224, 250, 661, 775, 903
BstMWI GCNNNNNNNGC 6 cut(s) 283, 313, 366, 488, 510, 862
BstNI CCWGG 2 cut(s) 234, 955
BstPI GGTNACC 1 cut(s) 397
BstSCI CCNGG 3 cut(s) 232, 657, 953
BstSFI CTRYAG 3 cut(s) 79, 480, 863
BstSLI GKGCMC 1 cut(s) 468
BstV1I GCAGC 4 cut(s) 494, 684, 687, 849
BsuRI GGCC 4 cut(s) 85, 151, 169, 744
BtsCI GGATG 2 cut(s) 809, 838
BveI ACCTGC 1 cut(s) 744
Csp6I GTAC 3 cut(s) 136, 681, 763
CviAII CATG 3 cut(s) 278, 626, 668
CviQI GTAC 3 cut(s) 136, 681, 763
DdeI CTNAG 3 cut(s) 317, 687, 944
DpnI GATC 5 cut(s) 226, 252, 663, 777, 905
DpnII GATC 5 cut(s) 224, 250, 661, 775, 903
Eam1104I CTCTTC 3 cut(s) 435, 837, 945
EarI CTCTTC 3 cut(s) 435, 837, 945
Eco91I GGTNACC 1 cut(s) 397
EcoNI CCTNNNNNAGG 1 cut(s) 195
EcoO65I GGTNACC 1 cut(s) 397
EcoRII CCWGG 2 cut(s) 232, 953
FaeI CATG 3 cut(s) 281, 629, 671
FalI AAGNNNNNCTT 2 cut(s) 597, 629
FaqI GGGAC 1 cut(s) 18
FatI CATG 3 cut(s) 277, 625, 667
FbaI TGATCA 1 cut(s) 903
Fnu4HI GCNGC 4 cut(s) 483, 673, 676, 863
FokI GGATG 2 cut(s) 816, 845
Fsp4HI GCNGC 4 cut(s) 483, 673, 676, 863
GluI GCNGC 4 cut(s) 483, 673, 676, 863
GsaI CCCAGC 1 cut(s) 773
GsuI CTGGAG 1 cut(s) 878
HaeIII GGCC 4 cut(s) 85, 151, 169, 744
HapII CCGG 1 cut(s) 659
Hin1II CATG 3 cut(s) 281, 629, 671
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HindIII AAGCTT 1 cut(s) 566
HinfI GANTC 4 cut(s) 155, 194, 608, 887
HpaI GTTAAC 1 cut(s) 94
HpaII CCGG 1 cut(s) 659
HphI GGTGA 3 cut(s) 173, 248, 391
Hpy166II GTNNAC 2 cut(s) 94, 295
Hpy188I TCNGA 5 cut(s) 250, 695, 832, 898, 945
Hpy188III TCNNGA 6 cut(s) 22, 53, 198, 350, 605, 790
Hpy8I GTNNAC 2 cut(s) 94, 295
HpyCH4IV ACGT 1 cut(s) 130
HpyCH4V TGCA 5 cut(s) 212, 482, 739, 865, 926
HpyF10VI GCNNNNNNNGC 6 cut(s) 283, 313, 366, 488, 510, 862
HpyF3I CTNAG 3 cut(s) 317, 687, 944
HpySE526I ACGT 1 cut(s) 130
Hsp92II CATG 3 cut(s) 281, 629, 671
Ksp22I TGATCA 1 cut(s) 903
KspAI GTTAAC 1 cut(s) 94
Kzo9I GATC 5 cut(s) 224, 250, 661, 775, 903
LguI GCTCTTC 1 cut(s) 435
LmnI GCTCC 1 cut(s) 859
Lsp1109I GCAGC 4 cut(s) 494, 684, 687, 849
LweI GCATC 2 cut(s) 25, 935
MaeII ACGT 1 cut(s) 130
MaeIII GTNAC 3 cut(s) 397, 609, 699
MalI GATC 5 cut(s) 226, 252, 663, 777, 905
MboI GATC 5 cut(s) 224, 250, 661, 775, 903
MfeI CAATTG 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 468
MluCI AATT 4 cut(s) 48, 171, 754, 848
MlyI GAGTC 2 cut(s) 164, 617
MseI TTAA 5 cut(s) 93, 146, 615, 621, 758
MslI CAYNNNNRTG 1 cut(s) 329
MspA1I CMGCKG 1 cut(s) 773
MspI CCGG 1 cut(s) 659
MspR9I CCNGG 3 cut(s) 234, 659, 955
MunI CAATTG 1 cut(s) 171
MvaI CCWGG 2 cut(s) 234, 955
MwoI GCNNNNNNNGC 6 cut(s) 283, 313, 366, 488, 510, 862
NciI CCSGG 1 cut(s) 659
NdeII GATC 5 cut(s) 224, 250, 661, 775, 903
NlaIII CATG 3 cut(s) 281, 629, 671
NlaIV GGNNCC 1 cut(s) 952
NmuCI GTSAC 2 cut(s) 397, 609
PaqCI CACCTGC 1 cut(s) 744
PciSI GCTCTTC 1 cut(s) 435
PfeI GAWTC 2 cut(s) 194, 887
PkrI GCNGC 4 cut(s) 484, 674, 677, 864
PleI GAGTC 2 cut(s) 163, 616
PpsI GAGTC 2 cut(s) 163, 616
Psp1406I AACGTT 1 cut(s) 130
Psp6I CCWGG 2 cut(s) 232, 953
PspEI GGTNACC 1 cut(s) 397
PspFI CCCAGC 1 cut(s) 769
PspGI CCWGG 2 cut(s) 232, 953
PspN4I GGNNCC 1 cut(s) 952
PstI CTGCAG 2 cut(s) 484, 867
PvuII CAGCTG 1 cut(s) 773
RsaI GTAC 3 cut(s) 137, 682, 764
RsaNI GTAC 3 cut(s) 136, 681, 763
RseI CAYNNNNRTG 1 cut(s) 329
SapI GCTCTTC 1 cut(s) 435
SaqAI TTAA 5 cut(s) 93, 146, 615, 621, 758
SatI GCNGC 4 cut(s) 483, 673, 676, 863
Sau3AI GATC 5 cut(s) 224, 250, 661, 775, 903
ScaI AGTACT 1 cut(s) 682
SchI GAGTC 2 cut(s) 164, 617
ScrFI CCNGG 3 cut(s) 234, 659, 955
SduI GDGCHC 1 cut(s) 468
SfaNI GCATC 2 cut(s) 25, 935
SfcI CTRYAG 3 cut(s) 79, 480, 863
SmiMI CAYNNNNRTG 1 cut(s) 329
SmlI CTYRAG 2 cut(s) 569, 603
SmoI CTYRAG 2 cut(s) 569, 603
Sse9I AATT 4 cut(s) 48, 171, 754, 848
SsiI CCGC 2 cut(s) 511, 712
SspI AATATT 2 cut(s) 69, 619
StyD4I CCNGG 3 cut(s) 232, 657, 953
TaiI ACGT 1 cut(s) 133
TasI AATT 4 cut(s) 48, 171, 754, 848
TatI WGTACW 2 cut(s) 135, 680
TfiI GAWTC 2 cut(s) 194, 887
Tru1I TTAA 5 cut(s) 93, 146, 615, 621, 758
Tru9I TTAA 5 cut(s) 93, 146, 615, 621, 758
TseFI GTSAC 2 cut(s) 397, 609
TseI GCWGC 4 cut(s) 482, 672, 675, 862
Tsp45I GTSAC 2 cut(s) 397, 609
TspDTI ATGAA 4 cut(s) 313, 629, 642, 813
XagI CCTNNNNNAGG 1 cut(s) 195
XapI RAATTY 2 cut(s) 48, 754
ZrmI AGTACT 1 cut(s) 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.