Rh2AG468300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0014616
Physical Location & Seq
Forward (+)
68886758 .. 68889329
2572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG468300.1

Sequence Viewer

Length: 939 bp
ATGAAGCACCAGTCACTCTTGGATTTGCAGGAGAGGGGGGAAATATTCTTCTTTTACAGGCCAAAGGTGAACAAAGAAGAGGCTCACAGTCCAGACGATGTGCAACGTTTGTACATAGTATTGAGGCCAGAGTCTGGTGAGAGATCAATCGAAGAGAAGCAAGACCCAGATTCAGGAAAGGAAGGGGCAAAGAGGAAGGGATCAGATTCTGGGGATGAAGGAGGTTCTGGTGGTGGTGAAATTGAAGGTGGACATGGGAAGCAGGAGGTGAACATTGAGAAGCAACCATTGCTGAGGTTCATAGTGATGGGAAGGAAAAGCCTTCCTGATCCAAGCAAGAAGAGTAGACCTTATTGGGGCTTTGTGGAGTTGGTCACCACAAATATAGATGATGTCAAGTCTTCCCTGCAAGGAGAGGAGCATGATACTAAAACCAGAGGACACAGACATACATCAGCAGCAAGGGCACTTGGAGAAGGCATTTATCGCATTCTAAGGCATAAAGAGGGAAAGAAGAAACCCCACACTCATTTGATCTACAAGCTTGAGTTTCCACCTGAAGACGAGTGCAATAAGCCTCAGGAGTCACTAAACATTAAGCATGAAGGCTCATTTCATATTCAAATAAAGAACCCAGAGCAACATGGCAGCAGTACTTCACAGTACAGAGGGATGCAGAGCAAGCGCAGGGCAGTGTTTCCTGCTCACTTACAAGGCCAATTCGGGAAGCTACGGTTCCACCCGGCTGATCCACCAGACTTTTTGAACTACGAAGGTTGTGAATTCTTGCTCATATCGGCTTCGGATCATATAGAAGAGGAGTTGGGGTTAGAGCTTCAAACTGAGGAGGTGGAAGCTGATGAATCGTGTTCTGATTTGATCAAGACTTTTGGGGAGACTGCATCTACTACTCCTCTTCTGAAAGGCACTTGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

312

Amino Acids

35.25

Weight (kDa)

5.95

Isoelectric Point (pI)

60.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014616)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16770 AT1G16770 AT1G16770
fragaria_vesca FvH4_6g36570
malus_domestica MD17G1161100.v1.1
prunus_persica Prupe.3G025300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0149061
rosa_laevigata RLG00000020365
rosa_multiflora Rmu_sc0007360.1_g000002
rosa_roxburghii Rroxscaffold_2G00098510
rosa_rugosa Rorug02G0408900 Rorug02G0409000
rosa_samantha Rh2AG468300 Rh2BG481000 Rh2CG454500 Rh2DG489800
rosa_wichuraiana Rw2G038140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 134
AccI GTMKAC 1 cut(s) 346
AclI AACGTT 1 cut(s) 106
AclWI GGATC 4 cut(s) 208, 323, 743, 813
AcsI RAATTY 1 cut(s) 782
AcuI CTGAAG 1 cut(s) 579
AfaI GTAC 3 cut(s) 113, 655, 665
AfiI CCNNNNNNNGG 3 cut(s) 134, 173, 356
AgsI TTSAA 4 cut(s) 245, 623, 766, 839
AluBI AGCT 4 cut(s) 544, 730, 835, 857
AluI AGCT 4 cut(s) 544, 730, 835, 857
Alw26I GTCTC 1 cut(s) 890
AlwI GGATC 4 cut(s) 208, 323, 743, 813
AlwNI CAGNNNCTG 2 cut(s) 134, 209
AoxI GGCC 3 cut(s) 59, 125, 715
ApeKI GCWGC 2 cut(s) 458, 648
ApoI RAATTY 1 cut(s) 782
AspLEI GCGC 1 cut(s) 687
AsuC2I CCSGG 1 cut(s) 743
AsuHPI GGTGA 5 cut(s) 79, 149, 248, 280, 367
AxyI CCTNAGG 1 cut(s) 579
BaeGI GKGCMC 1 cut(s) 469
BbsI GAAGAC 2 cut(s) 393, 567
BbvCI CCTCAGC 1 cut(s) 293
BbvI GCAGC 2 cut(s) 470, 660
BccI CCATC 1 cut(s) 301
BclI TGATCA 1 cut(s) 879
BcnI CCSGG 1 cut(s) 743
BcoDI GTCTC 1 cut(s) 890
BisI GCNGC 2 cut(s) 459, 649
BlsI GCNGC 2 cut(s) 460, 650
BmcAI AGTACT 1 cut(s) 655
Bme1390I CCNGG 1 cut(s) 743
BmiI GGNNCC 1 cut(s) 737
BmrFI CCNGG 1 cut(s) 743
BmsI GCATC 2 cut(s) 663, 911
BpiI GAAGAC 2 cut(s) 393, 567
Bpu10I CCTNAGC 1 cut(s) 293
BpuEI CTTGAG 1 cut(s) 566
BpuMI CCSGG 1 cut(s) 743
BsaXI ACNNNNNCTCC 2 cut(s) 812, 842
Bsc4I CCNNNNNNNGG 3 cut(s) 134, 173, 356
Bse1I ACTGG 1 cut(s) 10
Bse21I CCTNAGG 1 cut(s) 579
Bse3DI GCAATG 1 cut(s) 287
BseGI GGATG 2 cut(s) 220, 678
BseLI CCNNNNNNNGG 3 cut(s) 134, 173, 356
BseMI GCAATG 1 cut(s) 287
BseMII CTCAG 3 cut(s) 284, 593, 834
BseNI ACTGG 1 cut(s) 10
BseRI GAGGAG 4 cut(s) 431, 833, 860, 903
BseSI GKGCMC 1 cut(s) 469
BseXI GCAGC 2 cut(s) 470, 660
BshFI GGCC 3 cut(s) 61, 127, 717
BsiSI CCGG 1 cut(s) 743
BslI CCNNNNNNNGG 3 cut(s) 134, 173, 356
BsmAI GTCTC 1 cut(s) 890
BsmI GAATGC 1 cut(s) 489
BsnI GGCC 3 cut(s) 61, 127, 717
Bsp1286I GDGCHC 1 cut(s) 469
Bsp1407I TGTACA 1 cut(s) 111
Bsp143I GATC 7 cut(s) 143, 200, 328, 534, 748, 805, 879
BspANI GGCC 3 cut(s) 61, 127, 717
BspCNI CTCAG 3 cut(s) 285, 592, 835
BspLI GGNNCC 1 cut(s) 737
BspPI GGATC 4 cut(s) 208, 323, 743, 813
BsrDI GCAATG 1 cut(s) 287
BsrGI TGTACA 1 cut(s) 111
BsrI ACTGG 1 cut(s) 10
BssMI GATC 7 cut(s) 143, 200, 328, 534, 748, 805, 879
Bst4CI ACNGT 3 cut(s) 89, 663, 735
Bst6I CTCTTC 5 cut(s) 72, 147, 335, 810, 921
BstAPI GCANNNNNTGC 1 cut(s) 289
BstAUI TGTACA 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 683
BstDEI CTNAG 4 cut(s) 293, 494, 579, 843
BstEII GGTNACC 1 cut(s) 373
BstF5I GGATG 2 cut(s) 220, 678
BstHHI GCGC 1 cut(s) 687
BstKTI GATC 7 cut(s) 146, 203, 331, 537, 751, 808, 882
BstMAI GTCTC 1 cut(s) 890
BstMBI GATC 7 cut(s) 143, 200, 328, 534, 748, 805, 879
BstMWI GCNNNNNNNGC 4 cut(s) 289, 464, 486, 682
BstPI GGTNACC 1 cut(s) 373
BstSCI CCNGG 1 cut(s) 741
BstSLI GKGCMC 1 cut(s) 469
BstV1I GCAGC 2 cut(s) 470, 660
BstV2I GAAGAC 2 cut(s) 393, 567
Bsu36I CCTNAGG 1 cut(s) 579
BsuRI GGCC 3 cut(s) 61, 127, 717
BtsCI GGATG 2 cut(s) 220, 678
BtsI GCAGTG 1 cut(s) 699
BtsIMutI CAGTG 1 cut(s) 699
Cac8I GCNNGC 1 cut(s) 683
CaiI CAGNNNCTG 2 cut(s) 134, 209
CfoI GCGC 1 cut(s) 687
Csp6I GTAC 3 cut(s) 112, 654, 664
CviAII CATG 4 cut(s) 254, 422, 602, 644
CviQI GTAC 3 cut(s) 112, 654, 664
DdeI CTNAG 4 cut(s) 293, 494, 579, 843
DpnI GATC 7 cut(s) 145, 202, 330, 536, 750, 807, 881
DpnII GATC 7 cut(s) 143, 200, 328, 534, 748, 805, 879
Eam1104I CTCTTC 5 cut(s) 72, 147, 335, 810, 921
EarI CTCTTC 5 cut(s) 72, 147, 335, 810, 921
Eco57I CTGAAG 1 cut(s) 579
Eco81I CCTNAGG 1 cut(s) 579
Eco91I GGTNACC 1 cut(s) 373
EcoO65I GGTNACC 1 cut(s) 373
EcoRI GAATTC 1 cut(s) 782
FaeI CATG 4 cut(s) 257, 425, 605, 647
FatI CATG 4 cut(s) 253, 421, 601, 643
FbaI TGATCA 1 cut(s) 879
FblI GTMKAC 1 cut(s) 346
Fnu4HI GCNGC 2 cut(s) 459, 649
FokI GGATG 2 cut(s) 227, 685
Fsp4HI GCNGC 2 cut(s) 459, 649
GlaI GCGC 1 cut(s) 686
GluI GCNGC 2 cut(s) 459, 649
HaeIII GGCC 3 cut(s) 61, 127, 717
HapII CCGG 1 cut(s) 743
HhaI GCGC 1 cut(s) 687
Hin1II CATG 4 cut(s) 257, 425, 605, 647
Hin6I GCGC 1 cut(s) 685
HinP1I GCGC 1 cut(s) 685
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 5 cut(s) 131, 170, 206, 584, 863
HpaII CCGG 1 cut(s) 743
HphI GGTGA 5 cut(s) 79, 149, 248, 280, 367
Hpy166II GTNNAC 4 cut(s) 70, 251, 271, 347
Hpy188I TCNGA 4 cut(s) 205, 805, 874, 921
Hpy188III TCNNGA 6 cut(s) 92, 174, 326, 581, 724, 883
Hpy8I GTNNAC 4 cut(s) 70, 251, 271, 347
HpyAV CCTTC 9 cut(s) 176, 190, 212, 239, 306, 332, 470, 599, 767
HpyCH4III ACNGT 3 cut(s) 89, 663, 735
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 6 cut(s) 28, 103, 409, 570, 676, 902
HpyF10VI GCNNNNNNNGC 4 cut(s) 289, 464, 486, 682
HpyF3I CTNAG 4 cut(s) 293, 494, 579, 843
HpySE526I ACGT 1 cut(s) 106
Hsp92II CATG 4 cut(s) 257, 425, 605, 647
HspAI GCGC 1 cut(s) 685
Ksp22I TGATCA 1 cut(s) 879
Kzo9I GATC 7 cut(s) 143, 200, 328, 534, 748, 805, 879
LmnI GCTCC 1 cut(s) 418
Lsp1109I GCAGC 2 cut(s) 470, 660
LweI GCATC 2 cut(s) 663, 911
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 3 cut(s) 12, 373, 585
MalI GATC 7 cut(s) 145, 202, 330, 536, 750, 807, 881
MboI GATC 7 cut(s) 143, 200, 328, 534, 748, 805, 879
MboII GAAGA 9 cut(s) 40, 89, 164, 352, 393, 526, 572, 827, 908
MhlI GDGCHC 1 cut(s) 469
MluCI AATT 3 cut(s) 240, 719, 782
MlyI GAGTC 2 cut(s) 140, 593
MseI TTAA 1 cut(s) 597
MslI CAYNNNNRTG 1 cut(s) 305
MspI CCGG 1 cut(s) 743
MspR9I CCNGG 1 cut(s) 743
Mva1269I GAATGC 1 cut(s) 489
MwoI GCNNNNNNNGC 4 cut(s) 289, 464, 486, 682
NciI CCSGG 1 cut(s) 743
NdeII GATC 7 cut(s) 143, 200, 328, 534, 748, 805, 879
NlaIII CATG 4 cut(s) 257, 425, 605, 647
NlaIV GGNNCC 1 cut(s) 737
NmuCI GTSAC 3 cut(s) 12, 373, 585
PctI GAATGC 1 cut(s) 489
PfeI GAWTC 3 cut(s) 170, 206, 863
PflMI CCANNNNNTGG 1 cut(s) 134
PkrI GCNGC 2 cut(s) 460, 650
PleI GAGTC 2 cut(s) 139, 592
PpsI GAGTC 2 cut(s) 139, 592
Psp1406I AACGTT 1 cut(s) 106
PspEI GGTNACC 1 cut(s) 373
PspN4I GGNNCC 1 cut(s) 737
PstNI CAGNNNCTG 2 cut(s) 134, 209
RsaI GTAC 3 cut(s) 113, 655, 665
RsaNI GTAC 3 cut(s) 112, 654, 664
RseI CAYNNNNRTG 1 cut(s) 305
SaqAI TTAA 1 cut(s) 597
SatI GCNGC 2 cut(s) 459, 649
Sau3AI GATC 7 cut(s) 143, 200, 328, 534, 748, 805, 879
ScaI AGTACT 1 cut(s) 655
SchI GAGTC 2 cut(s) 140, 593
ScrFI CCNGG 1 cut(s) 743
SduI GDGCHC 1 cut(s) 469
SfaNI GCATC 2 cut(s) 663, 911
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 3 cut(s) 240, 719, 782
SspI AATATT 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 741
TaaI ACNGT 3 cut(s) 89, 663, 735
TaiI ACGT 1 cut(s) 109
TaqI TCGA 1 cut(s) 150
TasI AATT 3 cut(s) 240, 719, 782
TatI WGTACW 3 cut(s) 111, 653, 663
TfiI GAWTC 3 cut(s) 170, 206, 863
Tru1I TTAA 1 cut(s) 597
Tru9I TTAA 1 cut(s) 597
TscAI CASTG 1 cut(s) 699
TseFI GTSAC 3 cut(s) 12, 373, 585
TseI GCWGC 2 cut(s) 458, 648
Tsp45I GTSAC 3 cut(s) 12, 373, 585
TspDTI ATGAA 6 cut(s) 17, 231, 289, 605, 618, 876
TspRI CASTG 1 cut(s) 699
Van91I CCANNNNNTGG 1 cut(s) 134
XapI RAATTY 1 cut(s) 782
XmiI GTMKAC 1 cut(s) 346
ZrmI AGTACT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.