Rmu_sc0007360.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007360.1
OG0014616
Physical Location & Seq
Reverse (-)
2978 .. 4495
1518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007360.1_g000002.1.cds

Sequence Viewer

Length: 897 bp
atgggacaaggccaagaagtattcaagaccaaaactgaggatgtccaagttgaaatccaggccaaaggtgaacaaagaagaggctcacagtccagcgatgtgcaacgtttttacatagttttgaggccagagtctggtgagagatcaatcgaagagaagcaagacccagattcaggaaaggaaggggcaaagaggaagggatcagattctggggatgaaggaggttctggtggtagtgaaggtgaaggtggacatgggaagcaggaggtgaacattgagaaggaaccattgctgaggttcatagtgatgggaaggaaaagccttcctgatccaagcaagaagagtagaccttattggggctttgtggagttggtcaccacaaatatagatgatgtcaagtcttccctgcaaggagcagcaagggcacttggagaaggcatttatcgcattctaaggcataaagagggaaagaagaaaccccacactcatttgatctacaagcttgagtttccacctgaagacgagtgcaataagcctcaggagtcactaaacattaagcatgaaggctcatttcatattcaaataaagaacccagagcaacatggcagcagtacttcacagtacagagggatgcagagcaagcgcagggcagtgtttcctgctcacttacaaggccaattcgggaagctacggttccacccggctgatccaccagactttttgaactacaaaggttgtgaattcttgctcatatcggcttcagatcatatagaggaggagttggggttagagcttcaaactgaggaggtggaagctgatgaatcgtgttctgatttgatcaagacttttggggagactgcatctactacttctcttcttaaaggcacttgggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

298

Amino Acids

33.25

Weight (kDa)

5.87

Isoelectric Point (pI)

60.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014616)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16770 AT1G16770 AT1G16770
fragaria_vesca FvH4_6g36570
malus_domestica MD17G1161100.v1.1
prunus_persica Prupe.3G025300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0149061
rosa_laevigata RLG00000020365
rosa_multiflora Rmu_sc0007360.1_g000002
rosa_roxburghii Rroxscaffold_2G00098510
rosa_rugosa Rorug02G0408900 Rorug02G0409000
rosa_samantha Rh2AG468300 Rh2BG481000 Rh2CG454500 Rh2DG489800
rosa_wichuraiana Rw2G038140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 134
AccI GTMKAC 1 cut(s) 346
AclI AACGTT 1 cut(s) 106
AclWI GGATC 3 cut(s) 208, 323, 701
AcsI RAATTY 1 cut(s) 740
AcuI CTGAAG 2 cut(s) 537, 744
AfaI GTAC 2 cut(s) 613, 623
AfiI CCNNNNNNNGG 3 cut(s) 134, 173, 356
AgsI TTSAA 5 cut(s) 25, 53, 581, 724, 797
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 4 cut(s) 502, 688, 793, 815
AluI AGCT 4 cut(s) 502, 688, 793, 815
Alw26I GTCTC 1 cut(s) 848
AlwI GGATC 3 cut(s) 208, 323, 701
AlwNI CAGNNNCTG 2 cut(s) 134, 209
AoxI GGCC 4 cut(s) 10, 60, 125, 673
ApeKI GCWGC 2 cut(s) 416, 606
ApoI RAATTY 1 cut(s) 740
AspLEI GCGC 1 cut(s) 645
AsuC2I CCSGG 1 cut(s) 701
AsuHPI GGTGA 5 cut(s) 80, 149, 254, 280, 367
AxyI CCTNAGG 1 cut(s) 537
BaeGI GKGCMC 1 cut(s) 427
BbsI GAAGAC 2 cut(s) 393, 525
BbvCI CCTCAGC 1 cut(s) 293
BbvI GCAGC 2 cut(s) 428, 618
BccI CCATC 1 cut(s) 301
BciT130I CCWGG 1 cut(s) 59
BclI TGATCA 1 cut(s) 837
BcnI CCSGG 1 cut(s) 701
BcoDI GTCTC 1 cut(s) 848
BisI GCNGC 2 cut(s) 417, 607
BlsI GCNGC 2 cut(s) 418, 608
BmcAI AGTACT 1 cut(s) 613
Bme1390I CCNGG 2 cut(s) 59, 701
BmiI GGNNCC 2 cut(s) 285, 695
BmrFI CCNGG 2 cut(s) 59, 701
BmsI GCATC 2 cut(s) 621, 869
BpiI GAAGAC 2 cut(s) 393, 525
Bpu10I CCTNAGC 1 cut(s) 293
BpuEI CTTGAG 1 cut(s) 524
BpuMI CCSGG 1 cut(s) 701
BsaXI ACNNNNNCTCC 2 cut(s) 770, 800
Bsc4I CCNNNNNNNGG 3 cut(s) 134, 173, 356
Bse21I CCTNAGG 1 cut(s) 537
Bse3DI GCAATG 1 cut(s) 287
BseBI CCWGG 1 cut(s) 59
BseGI GGATG 3 cut(s) 46, 220, 636
BseLI CCNNNNNNNGG 3 cut(s) 134, 173, 356
BseMI GCAATG 1 cut(s) 287
BseMII CTCAG 4 cut(s) 27, 284, 551, 792
BseRI GAGGAG 3 cut(s) 788, 791, 818
BseSI GKGCMC 1 cut(s) 427
BseXI GCAGC 2 cut(s) 428, 618
BshFI GGCC 4 cut(s) 12, 62, 127, 675
BsiSI CCGG 1 cut(s) 701
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 3 cut(s) 134, 173, 356
BsmAI GTCTC 1 cut(s) 848
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 447
BsnI GGCC 4 cut(s) 12, 62, 127, 675
Bsp1286I GDGCHC 1 cut(s) 427
Bsp143I GATC 7 cut(s) 143, 200, 328, 492, 706, 763, 837
BspANI GGCC 4 cut(s) 12, 62, 127, 675
BspCNI CTCAG 4 cut(s) 28, 285, 550, 793
BspLI GGNNCC 2 cut(s) 285, 695
BspPI GGATC 3 cut(s) 208, 323, 701
BsrDI GCAATG 1 cut(s) 287
BssMI GATC 7 cut(s) 143, 200, 328, 492, 706, 763, 837
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 3 cut(s) 90, 621, 693
Bst6I CTCTTC 4 cut(s) 73, 147, 335, 879
BstC8I GCNNGC 1 cut(s) 641
BstDEI CTNAG 5 cut(s) 36, 293, 452, 537, 801
BstEII GGTNACC 1 cut(s) 373
BstF5I GGATG 3 cut(s) 46, 220, 636
BstHHI GCGC 1 cut(s) 645
BstKTI GATC 7 cut(s) 146, 203, 331, 495, 709, 766, 840
BstMAI GTCTC 1 cut(s) 848
BstMBI GATC 7 cut(s) 143, 200, 328, 492, 706, 763, 837
BstMWI GCNNNNNNNGC 3 cut(s) 422, 444, 640
BstNI CCWGG 1 cut(s) 59
BstPI GGTNACC 1 cut(s) 373
BstSCI CCNGG 2 cut(s) 57, 699
BstSLI GKGCMC 1 cut(s) 427
BstV1I GCAGC 2 cut(s) 428, 618
BstV2I GAAGAC 2 cut(s) 393, 525
Bsu36I CCTNAGG 1 cut(s) 537
BsuRI GGCC 4 cut(s) 12, 62, 127, 675
BtgZI GCGATG 1 cut(s) 111
BtsCI GGATG 3 cut(s) 46, 220, 636
BtsI GCAGTG 1 cut(s) 657
BtsIMutI CAGTG 1 cut(s) 657
Cac8I GCNNGC 1 cut(s) 641
CaiI CAGNNNCTG 2 cut(s) 134, 209
CfoI GCGC 1 cut(s) 645
Csp6I GTAC 2 cut(s) 612, 622
CviAII CATG 3 cut(s) 254, 560, 602
CviQI GTAC 2 cut(s) 612, 622
DdeI CTNAG 5 cut(s) 36, 293, 452, 537, 801
DpnI GATC 7 cut(s) 145, 202, 330, 494, 708, 765, 839
DpnII GATC 7 cut(s) 143, 200, 328, 492, 706, 763, 837
Eam1104I CTCTTC 4 cut(s) 73, 147, 335, 879
EarI CTCTTC 4 cut(s) 73, 147, 335, 879
Eco57I CTGAAG 2 cut(s) 537, 744
Eco81I CCTNAGG 1 cut(s) 537
Eco91I GGTNACC 1 cut(s) 373
EcoO65I GGTNACC 1 cut(s) 373
EcoRI GAATTC 1 cut(s) 740
EcoRII CCWGG 1 cut(s) 57
FaeI CATG 3 cut(s) 257, 563, 605
FaqI GGGAC 1 cut(s) 18
FatI CATG 3 cut(s) 253, 559, 601
FbaI TGATCA 1 cut(s) 837
FblI GTMKAC 1 cut(s) 346
Fnu4HI GCNGC 2 cut(s) 417, 607
FokI GGATG 3 cut(s) 53, 227, 643
Fsp4HI GCNGC 2 cut(s) 417, 607
GlaI GCGC 1 cut(s) 644
GluI GCNGC 2 cut(s) 417, 607
HaeIII GGCC 4 cut(s) 12, 62, 127, 675
HapII CCGG 1 cut(s) 701
HhaI GCGC 1 cut(s) 645
Hin1II CATG 3 cut(s) 257, 563, 605
Hin6I GCGC 1 cut(s) 643
HinP1I GCGC 1 cut(s) 643
HindIII AAGCTT 1 cut(s) 500
HinfI GANTC 5 cut(s) 131, 170, 206, 542, 821
HpaII CCGG 1 cut(s) 701
HphI GGTGA 5 cut(s) 80, 149, 254, 280, 367
Hpy166II GTNNAC 4 cut(s) 71, 251, 271, 347
Hpy188I TCNGA 3 cut(s) 205, 763, 832
Hpy188III TCNNGA 6 cut(s) 25, 174, 326, 539, 682, 841
Hpy8I GTNNAC 4 cut(s) 71, 251, 271, 347
HpyCH4III ACNGT 3 cut(s) 90, 621, 693
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 5 cut(s) 103, 409, 528, 634, 860
HpyF10VI GCNNNNNNNGC 3 cut(s) 422, 444, 640
HpyF3I CTNAG 5 cut(s) 36, 293, 452, 537, 801
HpySE526I ACGT 1 cut(s) 106
Hsp92II CATG 3 cut(s) 257, 563, 605
HspAI GCGC 1 cut(s) 643
Ksp22I TGATCA 1 cut(s) 837
Kzo9I GATC 7 cut(s) 143, 200, 328, 492, 706, 763, 837
LmnI GCTCC 1 cut(s) 413
Lsp1109I GCAGC 2 cut(s) 428, 618
LweI GCATC 2 cut(s) 621, 869
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 2 cut(s) 373, 543
MalI GATC 7 cut(s) 145, 202, 330, 494, 708, 765, 839
MboI GATC 7 cut(s) 143, 200, 328, 492, 706, 763, 837
MboII GAAGA 7 cut(s) 90, 164, 352, 393, 484, 530, 866
MhlI GDGCHC 1 cut(s) 427
MluCI AATT 2 cut(s) 677, 740
MlyI GAGTC 2 cut(s) 140, 551
MseI TTAA 2 cut(s) 555, 879
MslI CAYNNNNRTG 1 cut(s) 305
MspI CCGG 1 cut(s) 701
MspR9I CCNGG 2 cut(s) 59, 701
Mva1269I GAATGC 1 cut(s) 447
MvaI CCWGG 1 cut(s) 59
MwoI GCNNNNNNNGC 3 cut(s) 422, 444, 640
NciI CCSGG 1 cut(s) 701
NdeII GATC 7 cut(s) 143, 200, 328, 492, 706, 763, 837
NlaIII CATG 3 cut(s) 257, 563, 605
NlaIV GGNNCC 2 cut(s) 285, 695
NmuCI GTSAC 2 cut(s) 373, 543
PctI GAATGC 1 cut(s) 447
PfeI GAWTC 3 cut(s) 170, 206, 821
PflMI CCANNNNNTGG 1 cut(s) 134
PkrI GCNGC 2 cut(s) 418, 608
PleI GAGTC 2 cut(s) 139, 550
PpsI GAGTC 2 cut(s) 139, 550
Psp1406I AACGTT 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 57
PspEI GGTNACC 1 cut(s) 373
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 2 cut(s) 285, 695
PstNI CAGNNNCTG 2 cut(s) 134, 209
RsaI GTAC 2 cut(s) 613, 623
RsaNI GTAC 2 cut(s) 612, 622
RseI CAYNNNNRTG 1 cut(s) 305
SaqAI TTAA 2 cut(s) 555, 879
SatI GCNGC 2 cut(s) 417, 607
Sau3AI GATC 7 cut(s) 143, 200, 328, 492, 706, 763, 837
ScaI AGTACT 1 cut(s) 613
SchI GAGTC 2 cut(s) 140, 551
ScrFI CCNGG 2 cut(s) 59, 701
SduI GDGCHC 1 cut(s) 427
SfaNI GCATC 2 cut(s) 621, 869
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
Sse9I AATT 2 cut(s) 677, 740
StyD4I CCNGG 2 cut(s) 57, 699
TaaI ACNGT 3 cut(s) 90, 621, 693
TaiI ACGT 1 cut(s) 109
TaqI TCGA 1 cut(s) 150
TasI AATT 2 cut(s) 677, 740
TatI WGTACW 2 cut(s) 611, 621
TfiI GAWTC 3 cut(s) 170, 206, 821
Tru1I TTAA 2 cut(s) 555, 879
Tru9I TTAA 2 cut(s) 555, 879
TscAI CASTG 1 cut(s) 657
TseFI GTSAC 2 cut(s) 373, 543
TseI GCWGC 2 cut(s) 416, 606
Tsp45I GTSAC 2 cut(s) 373, 543
TspDTI ATGAA 5 cut(s) 231, 289, 563, 576, 834
TspRI CASTG 1 cut(s) 657
Van91I CCANNNNNTGG 1 cut(s) 134
XapI RAATTY 1 cut(s) 740
XmiI GTMKAC 1 cut(s) 346
ZrmI AGTACT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.