AT1G16825

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015095
Physical Location & Seq
Forward (+)
5758855 .. 5760509
1655 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G16825.2

Sequence Viewer

Length: 468 bp
ATGGGGGAAATGGGAAAGGCGATAGGATTGCTGATAAGCGGGACGCTTGTGTATCACCATTGCGCTAATCGCAACGCGACTCTTCTCTCGCTCATCTCCGACGTTCTCATCGTTCTCTTATCTTCACTCGCCATTCTCGGCCTTCTTTTTCGTCACCTCAATGTCTCGGTACCTGTGGATCCATTAGAGTGGCAAATATCACAAGACACAGCCTGTAACATTGTGGCGCGCTTAGCTAATACTGTTGGAGCAGCTGAATCCGTTCTGCGGGTTGCAGCAACAGGACATGACAAGAGGCTCTTTGTTAAGGTTGTGATCTGTCTTTACTTCTTGGCAGCTCTAGGACGAATCATATCGGGTGTGACCATTGCCTATGCAGGACTATGTTTGTTCTGTCTCTCCATGCTTTTTCGGAGTTCAATTAGAAACTCCGTATTGAACCGAAGAAACGGAGAGATTTTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Reticulon

Protein Analysis

155

Amino Acids

16.73

Weight (kDa)

8.99

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 6 - 109 2.1e-08 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16825 AT1G78895
fragaria_vesca FvH4_6g36900 FvH4_6g36900
malus_domestica MD09G1166000.v1.1 MD17G1161700.v1.1
prunus_persica Prupe.3G023400_v2.0.a1
pyrus_communis pycom17g15490
rosa_chinensis RchiOBHm_Chr2g0149331
rosa_laevigata RLG00000020393
rosa_multiflora Rmu_sc0000873.1_g000016
rosa_roxburghii Rroxscaffold_2G00098210
rosa_rugosa Rorug02G0410600
rosa_samantha Rh2AG471300 Rh2CG457200
rosa_wichuraiana Rw2G038340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 169
AccB1I GGYRCC 1 cut(s) 169
AccII CGCG 2 cut(s) 77, 229
AciI CCGC 2 cut(s) 39, 268
AclWI GGATC 2 cut(s) 173, 186
AfaI GTAC 1 cut(s) 171
AfiI CCNNNNNNNGG 1 cut(s) 267
AgsI TTSAA 2 cut(s) 420, 439
AluBI AGCT 3 cut(s) 236, 254, 338
AluI AGCT 3 cut(s) 236, 254, 338
Alw26I GTCTC 2 cut(s) 169, 401
AlwI GGATC 2 cut(s) 173, 186
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 3 cut(s) 251, 275, 335
Asp700I GAANNNNTTC 1 cut(s) 261
Asp718I GGTACC 1 cut(s) 169
AspLEI GCGC 3 cut(s) 65, 229, 231
AsuHPI GGTGA 2 cut(s) 47, 146
BamHI GGATCC 1 cut(s) 178
BanI GGYRCC 1 cut(s) 169
BbvI GCAGC 3 cut(s) 263, 287, 347
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BcoDI GTCTC 2 cut(s) 169, 401
BfaI CTAG 1 cut(s) 341
BisI GCNGC 3 cut(s) 252, 276, 336
BlpI GCTNAGC 1 cut(s) 232
BlsI GCNGC 3 cut(s) 253, 277, 337
BmiI GGNNCC 2 cut(s) 171, 180
Bpu1102I GCTNAGC 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse3DI GCAATG 2 cut(s) 58, 366
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMI GCAATG 2 cut(s) 58, 366
BsePI GCGCGC 1 cut(s) 227
BseXI GCAGC 3 cut(s) 263, 287, 347
Bsh1236I CGCG 2 cut(s) 77, 229
BshFI GGCC 1 cut(s) 141
BshNI GGYRCC 1 cut(s) 169
BslFI GGGAC 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 2 cut(s) 169, 401
BsmFI GGGAC 1 cut(s) 55
BsnI GGCC 1 cut(s) 141
Bsp143I GATC 2 cut(s) 178, 315
Bsp1720I GCTNAGC 1 cut(s) 232
BspACI CCGC 2 cut(s) 39, 268
BspANI GGCC 1 cut(s) 141
BspFNI CGCG 2 cut(s) 77, 229
BspLI GGNNCC 2 cut(s) 171, 180
BspPI GGATC 2 cut(s) 173, 186
BspT107I GGYRCC 1 cut(s) 169
BsrDI GCAATG 2 cut(s) 58, 366
BssHII GCGCGC 1 cut(s) 227
BssMI GATC 2 cut(s) 178, 315
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 232
BstFNI CGCG 2 cut(s) 77, 229
BstHHI GCGC 3 cut(s) 65, 229, 231
BstKTI GATC 2 cut(s) 181, 318
BstMAI GTCTC 2 cut(s) 169, 401
BstMBI GATC 2 cut(s) 178, 315
BstMWI GCNNNNNNNGC 2 cut(s) 69, 233
BstUI CGCG 2 cut(s) 77, 229
BstV1I GCAGC 3 cut(s) 263, 287, 347
BstX2I RGATCY 1 cut(s) 178
BstXI CCANNNNNNTGG 1 cut(s) 189
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 229
CfoI GCGC 3 cut(s) 65, 229, 231
CseI GACGC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 170
CviAII CATG 2 cut(s) 287, 403
CviJI RGCY 6 cut(s) 141, 212, 236, 254, 298, 338
CviKI_1 RGCY 6 cut(s) 141, 212, 236, 254, 298, 338
CviQI GTAC 1 cut(s) 170
DdeI CTNAG 1 cut(s) 232
DpnI GATC 2 cut(s) 180, 317
DpnII GATC 2 cut(s) 178, 315
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
FaeI CATG 2 cut(s) 290, 406
FaiI YATR 5 cut(s) 288, 353, 375, 385, 404
FalI AAGNNNNNCTT 2 cut(s) 284, 316
FaqI GGGAC 1 cut(s) 55
FatI CATG 2 cut(s) 286, 402
FauI CCCGC 2 cut(s) 32, 261
Fnu4HI GCNGC 3 cut(s) 252, 276, 336
Fsp4HI GCNGC 3 cut(s) 252, 276, 336
FspBI CTAG 1 cut(s) 341
GlaI GCGC 3 cut(s) 64, 228, 230
GluI GCNGC 3 cut(s) 252, 276, 336
HaeIII GGCC 1 cut(s) 141
HgaI GACGC 1 cut(s) 52
HhaI GCGC 3 cut(s) 65, 229, 231
Hin1II CATG 2 cut(s) 290, 406
Hin6I GCGC 3 cut(s) 63, 227, 229
HinP1I GCGC 3 cut(s) 63, 227, 229
HinfI GANTC 3 cut(s) 79, 257, 348
HphI GGTGA 2 cut(s) 47, 146
Hpy188I TCNGA 2 cut(s) 100, 414
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 2 cut(s) 275, 377
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 233
HpyF3I CTNAG 1 cut(s) 232
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 2 cut(s) 290, 406
HspAI GCGC 3 cut(s) 63, 227, 229
KpnI GGTACC 1 cut(s) 173
Kzo9I GATC 2 cut(s) 178, 315
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 4 cut(s) 186, 226, 267, 363
Lsp1109I GCAGC 3 cut(s) 263, 287, 347
MaeI CTAG 1 cut(s) 341
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 3 cut(s) 152, 215, 361
MalI GATC 2 cut(s) 180, 317
MboI GATC 2 cut(s) 178, 315
MboII GAAGA 3 cut(s) 74, 114, 456
MflI RGATCY 1 cut(s) 178
MluCI AATT 1 cut(s) 420
MlyI GAGTC 1 cut(s) 73
MmeI TCCRAC 2 cut(s) 123, 226
MnlI CCTC 2 cut(s) 167, 288
MroXI GAANNNNTTC 1 cut(s) 261
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 2 cut(s) 159, 187
MspA1I CMGCKG 1 cut(s) 254
MvnI CGCG 2 cut(s) 77, 229
MwoI GCNNNNNNNGC 2 cut(s) 69, 233
NdeII GATC 2 cut(s) 178, 315
NlaIII CATG 2 cut(s) 290, 406
NlaIV GGNNCC 2 cut(s) 171, 180
NmeAIII GCCGAG 1 cut(s) 117
NmuCI GTSAC 2 cut(s) 152, 361
PauI GCGCGC 1 cut(s) 227
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 2 cut(s) 257, 348
PkrI GCNGC 3 cut(s) 253, 277, 337
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PspN4I GGNNCC 2 cut(s) 171, 180
PsuI RGATCY 1 cut(s) 178
PteI GCGCGC 1 cut(s) 227
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
RseI CAYNNNNRTG 2 cut(s) 159, 187
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 3 cut(s) 252, 276, 336
Sau3AI GATC 2 cut(s) 178, 315
SchI GAGTC 1 cut(s) 73
SetI ASST 7 cut(s) 105, 159, 175, 238, 256, 312, 340
SmiMI CAYNNNNRTG 2 cut(s) 159, 187
Sse9I AATT 1 cut(s) 420
SsiI CCGC 2 cut(s) 39, 268
SspMI CTAG 1 cut(s) 341
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 1 cut(s) 105
TasI AATT 1 cut(s) 420
TfiI GAWTC 2 cut(s) 257, 348
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TseFI GTSAC 2 cut(s) 152, 361
TseI GCWGC 3 cut(s) 251, 275, 335
Tsp45I GTSAC 2 cut(s) 152, 361
TspGWI ACGGA 3 cut(s) 250, 421, 465
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.