Prupe.3G023400_v2.0.a1

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0015095
Physical Location & Seq
Forward (+)
1734600 .. 1736996
2397 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G023400.1

Sequence Viewer

Length: 516 bp
ATGGATTATCGATCAGAAGTAGGGAAGCCGGTGATAGTGTTGATTTGCGGTAGCTTAGTCTATTACCACTGCGCGCATCGCAACTCCAGCCTCGTCTCTCTTGTATCCGATGTCCTCATCGTCCTCCTCTGTTCGCTCGCCATTCTCGGCCTTCTCTTTCGCCAGATGAACATCTCGGTACCCGTCGATCCACTCGAGTGGCAGATTTCGCAGGACACTGCTAATAGCATTGTTGCATGGTTAGCCAATACCATAGGAGCAGCTGAGTCTGTATTGAGGGTTGCAGCCACGGGGCACGACAAGAGGTTGTTTTTCAAGGTGGTGTTTTGTCTTTACATGCTTTCAGCTTTGGGACGGTTGGTGTCAGGTCTTACAGTTGCCTATGCTGGATTATGCTTATTTTGCCTTTATATGTTAGCTGAGAACAGTCAGTCAATCAGTGCATGTTTGTCTCGATTTCTGAGGAGAACGAATGATCTAGCGGAGGAAGATGCTGCTGAGCAAGATACTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Reticulon

Protein Analysis

172

Amino Acids

18.78

Weight (kDa)

5.52

Isoelectric Point (pI)

47.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16825 AT1G78895
fragaria_vesca FvH4_6g36900 FvH4_6g36900
malus_domestica MD09G1166000.v1.1 MD17G1161700.v1.1
prunus_persica Prupe.3G023400_v2.0.a1
pyrus_communis pycom17g15490
rosa_chinensis RchiOBHm_Chr2g0149331
rosa_laevigata RLG00000020393
rosa_multiflora Rmu_sc0000873.1_g000016
rosa_roxburghii Rroxscaffold_2G00098210
rosa_rugosa Rorug02G0410600
rosa_samantha Rh2AG471300 Rh2CG457200
rosa_wichuraiana Rw2G038340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 178
AccB1I GGYRCC 1 cut(s) 178
AccII CGCG 1 cut(s) 74
AciI CCGC 2 cut(s) 48, 482
AclWI GGATC 1 cut(s) 182
AfaI GTAC 1 cut(s) 180
AgsI TTSAA 1 cut(s) 316
AleI CACNNNNGTG 1 cut(s) 196
AluBI AGCT 4 cut(s) 54, 263, 347, 419
AluI AGCT 4 cut(s) 54, 263, 347, 419
Alw26I GTCTC 2 cut(s) 100, 456
AlwI GGATC 1 cut(s) 182
Ama87I CYCGRG 1 cut(s) 194
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 3 cut(s) 260, 284, 494
Asp718I GGTACC 1 cut(s) 178
AspLEI GCGC 2 cut(s) 74, 76
AsuHPI GGTGA 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 194
BaeGI GKGCMC 1 cut(s) 297
BanI GGYRCC 1 cut(s) 178
BbvI GCAGC 3 cut(s) 272, 296, 481
BciVI GTATCC 1 cut(s) 115
BcoDI GTCTC 2 cut(s) 100, 456
BfaI CTAG 1 cut(s) 479
BfuI GTATCC 1 cut(s) 115
BisI GCNGC 3 cut(s) 261, 285, 495
BlpI GCTNAGC 1 cut(s) 498
BlsI GCNGC 3 cut(s) 262, 286, 496
BmeT110I CYCGRG 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 180
BmsI GCATC 2 cut(s) 85, 481
BpmI CTGGAG 1 cut(s) 70
Bpu1102I GCTNAGC 1 cut(s) 498
Bsa29I ATCGAT 1 cut(s) 10
BsaBI GATNNNNATC 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 288
Bse118I RCCGGY 1 cut(s) 28
Bse8I GATNNNNATC 1 cut(s) 170
BseCI ATCGAT 1 cut(s) 10
BseDI CCNNGG 1 cut(s) 288
BseJI GATNNNNATC 1 cut(s) 170
BseMII CTCAG 4 cut(s) 255, 411, 452, 489
BsePI GCGCGC 1 cut(s) 72
BseRI GAGGAG 2 cut(s) 116, 478
BseSI GKGCMC 1 cut(s) 297
BseXI GCAGC 3 cut(s) 272, 296, 481
Bsh1236I CGCG 1 cut(s) 74
BshFI GGCC 1 cut(s) 150
BshNI GGYRCC 1 cut(s) 178
BshVI ATCGAT 1 cut(s) 10
BsiHKCI CYCGRG 1 cut(s) 194
BsiSI CCGG 1 cut(s) 29
BslFI GGGAC 1 cut(s) 366
BsmAI GTCTC 2 cut(s) 100, 456
BsmBI CGTCTC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 366
BsnI GGCC 1 cut(s) 150
BsoBI CYCGRG 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 3 cut(s) 11, 187, 475
Bsp1720I GCTNAGC 1 cut(s) 498
BspACI CCGC 2 cut(s) 48, 482
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 4 cut(s) 256, 412, 453, 490
BspDI ATCGAT 1 cut(s) 10
BspFNI CGCG 1 cut(s) 74
BspLI GGNNCC 1 cut(s) 180
BspPI GGATC 1 cut(s) 182
BspT107I GGYRCC 1 cut(s) 178
BsrFI RCCGGY 1 cut(s) 28
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 288
BssHII GCGCGC 1 cut(s) 72
BssMI GATC 3 cut(s) 11, 187, 475
Bst4CI ACNGT 3 cut(s) 357, 376, 428
BstC8I GCNNGC 2 cut(s) 74, 138
BstDEI CTNAG 5 cut(s) 55, 264, 420, 461, 498
BstDSI CCRYGG 1 cut(s) 288
BstFNI CGCG 1 cut(s) 74
BstHHI GCGC 2 cut(s) 74, 76
BstKTI GATC 3 cut(s) 14, 190, 478
BstMAI GTCTC 2 cut(s) 100, 456
BstMBI GATC 3 cut(s) 11, 187, 475
BstMWI GCNNNNNNNGC 5 cut(s) 78, 87, 208, 242, 402
BstNSI RCATGY 2 cut(s) 340, 447
BstSLI GKGCMC 1 cut(s) 297
BstUI CGCG 1 cut(s) 74
BstV1I GCAGC 3 cut(s) 272, 296, 481
BstXI CCANNNNNNTGG 1 cut(s) 198
Bsu15I ATCGAT 1 cut(s) 10
BsuI GTATCC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 150
BsuTUI ATCGAT 1 cut(s) 10
BtgI CCRYGG 1 cut(s) 288
BtgZI GCGATG 1 cut(s) 62
BtsI GCAGTG 2 cut(s) 67, 216
BtsIMutI CAGTG 3 cut(s) 67, 216, 445
Cac8I GCNNGC 2 cut(s) 74, 138
CfoI GCGC 2 cut(s) 74, 76
Cfr10I RCCGGY 1 cut(s) 28
ClaI ATCGAT 1 cut(s) 10
Csp6I GTAC 1 cut(s) 179
CviAII CATG 3 cut(s) 237, 337, 444
CviJI RGCY 9 cut(s) 28, 54, 90, 150, 245, 263, 287, 347, 419
CviKI_1 RGCY 9 cut(s) 28, 54, 90, 150, 245, 263, 287, 347, 419
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 5 cut(s) 55, 264, 420, 461, 498
DpnI GATC 3 cut(s) 13, 189, 477
DpnII GATC 3 cut(s) 11, 187, 475
Eco88I CYCGRG 1 cut(s) 194
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 3 cut(s) 240, 340, 447
FaiI YATR 9 cut(s) 238, 254, 338, 384, 394, 411, 413, 445, 512
FaqI GGGAC 1 cut(s) 366
FatI CATG 3 cut(s) 236, 336, 443
Fnu4HI GCNGC 3 cut(s) 261, 285, 495
Fsp4HI GCNGC 3 cut(s) 261, 285, 495
FspBI CTAG 1 cut(s) 479
GlaI GCGC 2 cut(s) 73, 75
GluI GCNGC 3 cut(s) 261, 285, 495
GsuI CTGGAG 1 cut(s) 70
HaeIII GGCC 1 cut(s) 150
HapII CCGG 1 cut(s) 29
HhaI GCGC 2 cut(s) 74, 76
Hin1II CATG 3 cut(s) 240, 340, 447
Hin6I GCGC 2 cut(s) 72, 74
HinP1I GCGC 2 cut(s) 72, 74
HinfI GANTC 1 cut(s) 266
HpaII CCGG 1 cut(s) 29
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 3 cut(s) 16, 109, 462
Hpy188III TCNNGA 1 cut(s) 453
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 3 cut(s) 357, 376, 428
HpyCH4V TGCA 3 cut(s) 236, 284, 443
HpyF10VI GCNNNNNNNGC 5 cut(s) 78, 87, 208, 242, 402
HpyF3I CTNAG 5 cut(s) 55, 264, 420, 461, 498
Hsp92II CATG 3 cut(s) 240, 340, 447
HspAI GCGC 2 cut(s) 72, 74
KpnI GGTACC 1 cut(s) 182
Kzo9I GATC 3 cut(s) 11, 187, 475
LmnI GCTCC 1 cut(s) 257
LpnPI CCDG 6 cut(s) 42, 100, 176, 197, 351, 372
Lsp1109I GCAGC 3 cut(s) 272, 296, 481
LweI GCATC 2 cut(s) 85, 481
MaeI CTAG 1 cut(s) 479
MalI GATC 3 cut(s) 13, 189, 477
MboI GATC 3 cut(s) 11, 187, 475
MboII GAAGA 1 cut(s) 500
MhlI GDGCHC 1 cut(s) 297
MlyI GAGTC 1 cut(s) 275
MnlI CCTC 8 cut(s) 101, 125, 134, 137, 270, 297, 456, 478
MslI CAYNNNNRTG 1 cut(s) 196
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 1 cut(s) 29
MvnI CGCG 1 cut(s) 74
MwoI GCNNNNNNNGC 5 cut(s) 78, 87, 208, 242, 402
NdeII GATC 3 cut(s) 11, 187, 475
NlaIII CATG 3 cut(s) 240, 340, 447
NlaIV GGNNCC 1 cut(s) 180
NmeAIII GCCGAG 1 cut(s) 126
NspI RCATGY 2 cut(s) 340, 447
OliI CACNNNNGTG 1 cut(s) 196
PaeR7I CTCGAG 1 cut(s) 194
PauI GCGCGC 1 cut(s) 72
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PkrI GCNGC 3 cut(s) 262, 286, 496
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 180
PspXI VCTCGAGB 1 cut(s) 194
PteI GCGCGC 1 cut(s) 72
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 196
SatI GCNGC 3 cut(s) 261, 285, 495
Sau3AI GATC 3 cut(s) 11, 187, 475
SchI GAGTC 1 cut(s) 275
SduI GDGCHC 1 cut(s) 297
SetI ASST 7 cut(s) 56, 265, 308, 321, 349, 370, 421
SfaNI GCATC 2 cut(s) 85, 481
Sfr274I CTCGAG 1 cut(s) 194
SlaI CTCGAG 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 196
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
SsiI CCGC 2 cut(s) 48, 482
SspMI CTAG 1 cut(s) 479
TaaI ACNGT 3 cut(s) 357, 376, 428
TaqI TCGA 4 cut(s) 10, 186, 195, 454
TscAI CASTG 3 cut(s) 74, 223, 445
TseI GCWGC 3 cut(s) 260, 284, 494
TspDTI ATGAA 1 cut(s) 182
TspRI CASTG 3 cut(s) 74, 223, 445
XceI RCATGY 2 cut(s) 340, 447
XhoI CTCGAG 1 cut(s) 194
XspI CTAG 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.