FvH4_6g36900

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015095
Physical Location & Seq
Reverse (-)
28966480 .. 28969283
2804 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36900.t1

Sequence Viewer

Length: 531 bp
ATGAAAGAAACGATGGAGTACCGGTCGGAAATTGGAAAGCCGGTGATAGTTCTGATATGCGGGTCCTTAGTGTACTACCACTGCGCCCATCGCAACTCCAGCCTCGTCTCTCTCGTCTCCGATGTCCTCATCGTCCTCCTCTGCTCTCTCGCCATTCTCGGCCTCCTCTTCCGCCAGATGAACATCTCGGTACCTGTGGATCCACTGGAGTGGCAGATTTCGCAGGACACTGCAAATAGCATTGTCGCAGGGATAGCTAATACTGTAGGAGCAGCGGAGTCTGTGTTGAGGGTTGCGGCCACAGGGCATGACAAGAGGTTGTTTTTCAAGGTAGTGGTTAGTCTTTACGTGCTATCAGCTTTGGGACGGTTGGTTTCAGGTCTTACAGTTGCCTATGCTGGATTATGCTTATTTTGCATTTATATGTTTGCGGAGAGCAGTCCGTCTATCAGTTCATGTTTGTCTCGTTTTCTGGGGAGAAACAATGGCCTTACAGCGGAAGATACAGAAGAGCAGGAAGACACTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Reticulon

Protein Analysis

177

Amino Acids

19.1

Weight (kDa)

5.31

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 15 - 138 6e-17 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16825 AT1G78895
fragaria_vesca FvH4_6g36900 FvH4_6g36900
malus_domestica MD09G1166000.v1.1 MD17G1161700.v1.1
prunus_persica Prupe.3G023400_v2.0.a1
pyrus_communis pycom17g15490
rosa_chinensis RchiOBHm_Chr2g0149331
rosa_laevigata RLG00000020393
rosa_multiflora Rmu_sc0000873.1_g000016
rosa_roxburghii Rroxscaffold_2G00098210
rosa_rugosa Rorug02G0410600
rosa_samantha Rh2AG471300 Rh2CG457200
rosa_wichuraiana Rw2G038340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 190
AccB1I GGYRCC 1 cut(s) 190
AciI CCGC 6 cut(s) 60, 172, 275, 296, 431, 497
AclWI GGATC 2 cut(s) 194, 207
AcoI YGGCCR 1 cut(s) 297
AfaI GTAC 3 cut(s) 20, 74, 192
AfiI CCNNNNNNNGG 1 cut(s) 496
AgeI ACCGGT 1 cut(s) 21
AgsI TTSAA 1 cut(s) 328
AleI CACNNNNGTG 1 cut(s) 208
AluBI AGCT 2 cut(s) 257, 359
AluI AGCT 2 cut(s) 257, 359
Alw26I GTCTC 3 cut(s) 112, 121, 468
AlwI GGATC 2 cut(s) 194, 207
AoxI GGCC 3 cut(s) 160, 297, 487
ApeKI GCWGC 1 cut(s) 272
AsiGI ACCGGT 1 cut(s) 21
Asp718I GGTACC 1 cut(s) 190
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 55
AvaII GGWCC 1 cut(s) 63
BamHI GGATCC 1 cut(s) 199
BanI GGYRCC 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 525
BbvI GCAGC 1 cut(s) 284
BccI CCATC 2 cut(s) 7, 96
BcoDI GTCTC 3 cut(s) 112, 121, 468
BfmI CTRYAG 1 cut(s) 264
BisI GCNGC 2 cut(s) 273, 297
BlsI GCNGC 2 cut(s) 274, 298
Bme18I GGWCC 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 63
BmiI GGNNCC 3 cut(s) 64, 192, 201
BpiI GAAGAC 1 cut(s) 525
BpmI CTGGAG 2 cut(s) 82, 227
BsaAI YACGTR 1 cut(s) 349
BsaBI GATNNNNATC 1 cut(s) 182
BsaWI WCCGGW 1 cut(s) 21
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 269, 299
Bsc4I CCNNNNNNNGG 1 cut(s) 496
Bse118I RCCGGY 2 cut(s) 21, 40
Bse1I ACTGG 1 cut(s) 210
Bse8I GATNNNNATC 1 cut(s) 182
BseJI GATNNNNATC 1 cut(s) 182
BseLI CCNNNNNNNGG 1 cut(s) 496
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 2 cut(s) 128, 155
BseXI GCAGC 1 cut(s) 284
Bsh1285I CGRYCG 1 cut(s) 26
BshFI GGCC 3 cut(s) 162, 299, 489
BshNI GGYRCC 1 cut(s) 190
BshTI ACCGGT 1 cut(s) 21
BsiEI CGRYCG 1 cut(s) 26
BsiSI CCGG 2 cut(s) 22, 41
BslFI GGGAC 1 cut(s) 378
BslI CCNNNNNNNGG 1 cut(s) 496
BsmAI GTCTC 3 cut(s) 112, 121, 468
BsmBI CGTCTC 2 cut(s) 112, 121
BsmFI GGGAC 1 cut(s) 378
BsnI GGCC 3 cut(s) 162, 299, 489
Bsp143I GATC 1 cut(s) 199
BspACI CCGC 6 cut(s) 60, 172, 275, 296, 431, 497
BspANI GGCC 3 cut(s) 162, 299, 489
BspLI GGNNCC 3 cut(s) 64, 192, 201
BspPI GGATC 2 cut(s) 194, 207
BspQI GCTCTTC 1 cut(s) 504
BspT107I GGYRCC 1 cut(s) 190
BsrFI RCCGGY 2 cut(s) 21, 40
BsrI ACTGG 1 cut(s) 210
BssAI RCCGGY 2 cut(s) 21, 40
BssMI GATC 1 cut(s) 199
Bst4CI ACNGT 3 cut(s) 265, 369, 388
Bst6I CTCTTC 2 cut(s) 173, 504
BstBAI YACGTR 1 cut(s) 349
BstDEI CTNAG 1 cut(s) 67
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 1 cut(s) 202
BstMAI GTCTC 3 cut(s) 112, 121, 468
BstMBI GATC 1 cut(s) 199
BstMCI CGRYCG 1 cut(s) 26
BstMWI GCNNNNNNNGC 5 cut(s) 90, 99, 220, 254, 414
BstSFI CTRYAG 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 284
BstV2I GAAGAC 1 cut(s) 525
BstX2I RGATCY 1 cut(s) 199
BstXI CCANNNNNNTGG 1 cut(s) 210
BstYI RGATCY 1 cut(s) 199
BsuRI GGCC 3 cut(s) 162, 299, 489
BtgZI GCGATG 1 cut(s) 74
BtsI GCAGTG 2 cut(s) 79, 228
BtsIMutI CAGTG 3 cut(s) 79, 203, 228
CfoI GCGC 1 cut(s) 86
Cfr10I RCCGGY 2 cut(s) 21, 40
Cfr13I GGNCC 1 cut(s) 63
Csp6I GTAC 3 cut(s) 19, 73, 191
CspAI ACCGGT 1 cut(s) 21
CviAII CATG 2 cut(s) 308, 456
CviJI RGCY 7 cut(s) 40, 102, 162, 257, 299, 359, 489
CviKI_1 RGCY 7 cut(s) 40, 102, 162, 257, 299, 359, 489
CviQI GTAC 3 cut(s) 19, 73, 191
DdeI CTNAG 1 cut(s) 67
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 297
Eam1104I CTCTTC 2 cut(s) 173, 504
EarI CTCTTC 2 cut(s) 173, 504
EciI GGCGGA 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 63
Esp3I CGTCTC 2 cut(s) 112, 121
FaeI CATG 2 cut(s) 311, 459
FaiI YATR 8 cut(s) 58, 309, 396, 406, 423, 425, 457, 527
FaqI GGGAC 1 cut(s) 378
FatI CATG 2 cut(s) 307, 455
FauI CCCGC 1 cut(s) 53
Fnu4HI GCNGC 2 cut(s) 273, 297
Fsp4HI GCNGC 2 cut(s) 273, 297
GlaI GCGC 1 cut(s) 85
GluI GCNGC 2 cut(s) 273, 297
GsuI CTGGAG 2 cut(s) 82, 227
HaeIII GGCC 3 cut(s) 162, 299, 489
HapII CCGG 2 cut(s) 22, 41
HhaI GCGC 1 cut(s) 86
Hin1II CATG 2 cut(s) 311, 459
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HinfI GANTC 1 cut(s) 278
HpaII CCGG 2 cut(s) 22, 41
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 3 cut(s) 28, 54, 121
Hpy8I GTNNAC 1 cut(s) 73
HpyCH4III ACNGT 3 cut(s) 265, 369, 388
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 2 cut(s) 233, 417
HpyF10VI GCNNNNNNNGC 5 cut(s) 90, 99, 220, 254, 414
HpyF3I CTNAG 1 cut(s) 67
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 2 cut(s) 311, 459
HspAI GCGC 1 cut(s) 84
KpnI GGTACC 1 cut(s) 194
Kzo9I GATC 1 cut(s) 199
LguI GCTCTTC 1 cut(s) 504
LmnI GCTCC 1 cut(s) 269
Lsp1109I GCAGC 1 cut(s) 284
MaeII ACGT 1 cut(s) 348
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 4 cut(s) 160, 512, 521, 530
MflI RGATCY 1 cut(s) 199
MluCI AATT 1 cut(s) 30
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 1 cut(s) 6
MnlI CCTC 8 cut(s) 113, 137, 146, 149, 173, 176, 282, 309
MslI CAYNNNNRTG 2 cut(s) 208, 422
MspA1I CMGCKG 2 cut(s) 275, 497
MspI CCGG 2 cut(s) 22, 41
MwoI GCNNNNNNNGC 5 cut(s) 90, 99, 220, 254, 414
NdeII GATC 1 cut(s) 199
NlaIII CATG 2 cut(s) 311, 459
NlaIV GGNNCC 3 cut(s) 64, 192, 201
NmeAIII GCCGAG 1 cut(s) 138
OliI CACNNNNGTG 1 cut(s) 208
PciSI GCTCTTC 1 cut(s) 504
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PinAI ACCGGT 1 cut(s) 21
PkrI GCNGC 2 cut(s) 274, 298
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
Ppu21I YACGTR 1 cut(s) 349
PpuMI RGGWCCY 1 cut(s) 63
Psp5II RGGWCCY 1 cut(s) 63
PspN4I GGNNCC 3 cut(s) 64, 192, 201
PspPI GGNCC 1 cut(s) 63
PspPPI RGGWCCY 1 cut(s) 63
PsuI RGATCY 1 cut(s) 199
RsaI GTAC 3 cut(s) 20, 74, 192
RsaNI GTAC 3 cut(s) 19, 73, 191
RseI CAYNNNNRTG 2 cut(s) 208, 422
SapI GCTCTTC 1 cut(s) 504
SatI GCNGC 2 cut(s) 273, 297
Sau3AI GATC 1 cut(s) 199
Sau96I GGNCC 1 cut(s) 63
SchI GAGTC 1 cut(s) 287
SetI ASST 7 cut(s) 196, 259, 320, 333, 351, 361, 382
SfcI CTRYAG 1 cut(s) 264
SinI GGWCC 1 cut(s) 63
SmiMI CAYNNNNRTG 2 cut(s) 208, 422
Sse9I AATT 1 cut(s) 30
SsiI CCGC 6 cut(s) 60, 172, 275, 296, 431, 497
TaaI ACNGT 3 cut(s) 265, 369, 388
TaiI ACGT 1 cut(s) 351
TasI AATT 1 cut(s) 30
TatI WGTACW 1 cut(s) 72
TauI GCSGC 1 cut(s) 299
TscAI CASTG 3 cut(s) 86, 210, 235
TseI GCWGC 1 cut(s) 272
TspDTI ATGAA 3 cut(s) 17, 194, 444
TspGWI ACGGA 1 cut(s) 432
TspRI CASTG 3 cut(s) 86, 210, 235
VpaK11BI GGWCC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.