MD09G1166000.v1.1

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0015095
Physical Location & Seq
Reverse (-)
13566982 .. 13571437
4456 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1166000.v1.1.491

Sequence Viewer

Length: 525 bp
ATGAAGAACGTGGATTTCCGATCGGAAGTAGGGAAGCCGGTGGTAGTGCTAATATGCGGAAGCTTGGTGTATTACCACTGCGCCCACCGCAACTCCAGCCTCCTCTCTCTCCTCTCCGACGTCCTCATCGTCCTCCTCTGCTCTCTCGCCATTCTCGGCCTCCTCTTTCGCCAAATGAACGTATCGGTACCAGTGGATCCACTTGAGTGGCAGATTTCGCAGGACACTGCTAATAGCATTGTTGCATGGTTAGCCAATACCGTAGGAGCAGCTGAGTCTGTATTGAGGGTTGCAGCCACAGGGCATGACAAGAGGTTGTTTGTCAAGGTGGTGATTTGTCTCTACATGCTATCGGCTTTGGGACGGTTGATTTCAGGTCTTACAGTTGCATATGTTGGCCTATGCTTGTTTTGCCTTTATATGGTTGCGGAGAACAGTGAGTCAATCAGTGCATGTTTGTCTCGATTCCTGAGGAGAACAACTGATCTAACTGAGGAAGATGTTGCCGAGAGTGATACTACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Reticulon

Protein Analysis

175

Amino Acids

19.02

Weight (kDa)

5.55

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 14 - 137 1.4e-16 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16825 AT1G78895
fragaria_vesca FvH4_6g36900 FvH4_6g36900
malus_domestica MD09G1166000.v1.1 MD17G1161700.v1.1
prunus_persica Prupe.3G023400_v2.0.a1
pyrus_communis pycom17g15490
rosa_chinensis RchiOBHm_Chr2g0149331
rosa_laevigata RLG00000020393
rosa_multiflora Rmu_sc0000873.1_g000016
rosa_roxburghii Rroxscaffold_2G00098210
rosa_rugosa Rorug02G0410600
rosa_samantha Rh2AG471300 Rh2CG457200
rosa_wichuraiana Rw2G038340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 123
Acc65I GGTACC 1 cut(s) 187
AccB1I GGYRCC 1 cut(s) 187
AciI CCGC 3 cut(s) 57, 88, 428
AclWI GGATC 2 cut(s) 191, 204
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 1 cut(s) 189
AfiI CCNNNNNNNGG 1 cut(s) 421
AleI CACNNNNGTG 1 cut(s) 205
AluBI AGCT 2 cut(s) 63, 272
AluI AGCT 2 cut(s) 63, 272
Alw26I GTCTC 2 cut(s) 344, 465
AlwI GGATC 2 cut(s) 191, 204
AoxI GGCC 2 cut(s) 157, 397
ApeKI GCWGC 2 cut(s) 269, 293
Asp718I GGTACC 1 cut(s) 187
AspLEI GCGC 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 343
AxyI CCTNAGG 1 cut(s) 470
BamHI GGATCC 1 cut(s) 196
BanI GGYRCC 1 cut(s) 187
BbvI GCAGC 2 cut(s) 281, 305
BcoDI GTCTC 2 cut(s) 344, 465
BisI GCNGC 2 cut(s) 270, 294
BlsI GCNGC 2 cut(s) 271, 295
BmiI GGNNCC 2 cut(s) 189, 198
BpmI CTGGAG 1 cut(s) 79
BpuEI CTTGAG 1 cut(s) 224
BsaAI YACGTR 1 cut(s) 522
BsaHI GRCGYC 1 cut(s) 120
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 191
Bse21I CCTNAGG 1 cut(s) 470
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMII CTCAG 3 cut(s) 264, 461, 483
BseNI ACTGG 1 cut(s) 191
BseRI GAGGAG 5 cut(s) 92, 101, 125, 152, 487
BseXI GCAGC 2 cut(s) 281, 305
Bsh1285I CGRYCG 1 cut(s) 23
BshFI GGCC 2 cut(s) 159, 399
BshNI GGYRCC 1 cut(s) 187
BsiEI CGRYCG 1 cut(s) 23
BsiSI CCGG 1 cut(s) 38
BslFI GGGAC 1 cut(s) 375
BslI CCNNNNNNNGG 1 cut(s) 421
BsmAI GTCTC 2 cut(s) 344, 465
BsmFI GGGAC 1 cut(s) 375
BsnI GGCC 2 cut(s) 159, 399
Bsp143I GATC 3 cut(s) 20, 196, 484
BspACI CCGC 3 cut(s) 57, 88, 428
BspANI GGCC 2 cut(s) 159, 399
BspCNI CTCAG 3 cut(s) 265, 462, 484
BspLI GGNNCC 2 cut(s) 189, 198
BspPI GGATC 2 cut(s) 191, 204
BspT107I GGYRCC 1 cut(s) 187
BsrFI RCCGGY 1 cut(s) 37
BsrI ACTGG 1 cut(s) 191
BssAI RCCGGY 1 cut(s) 37
BssMI GATC 3 cut(s) 20, 196, 484
BssNI GRCGYC 1 cut(s) 120
Bst4CI ACNGT 4 cut(s) 262, 366, 385, 437
BstACI GRCGYC 1 cut(s) 120
BstBAI YACGTR 1 cut(s) 522
BstDEI CTNAG 3 cut(s) 273, 470, 492
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 3 cut(s) 23, 199, 487
BstMAI GTCTC 2 cut(s) 344, 465
BstMBI GATC 3 cut(s) 20, 196, 484
BstMCI CGRYCG 1 cut(s) 23
BstMWI GCNNNNNNNGC 5 cut(s) 87, 96, 217, 251, 411
BstNSI RCATGY 2 cut(s) 349, 456
BstSNI TACGTA 1 cut(s) 522
BstV1I GCAGC 2 cut(s) 281, 305
BstX2I RGATCY 1 cut(s) 196
BstXI CCANNNNNNTGG 1 cut(s) 207
BstYI RGATCY 1 cut(s) 196
Bsu36I CCTNAGG 1 cut(s) 470
BsuRI GGCC 2 cut(s) 159, 399
BtsI GCAGTG 2 cut(s) 76, 225
BtsIMutI CAGTG 5 cut(s) 76, 198, 225, 442, 454
CfoI GCGC 1 cut(s) 83
Cfr10I RCCGGY 1 cut(s) 37
Csp6I GTAC 1 cut(s) 188
CviAII CATG 4 cut(s) 246, 305, 346, 453
CviJI RGCY 9 cut(s) 37, 63, 99, 159, 254, 272, 296, 356, 399
CviKI_1 RGCY 9 cut(s) 37, 63, 99, 159, 254, 272, 296, 356, 399
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 3 cut(s) 273, 470, 492
DpnI GATC 3 cut(s) 22, 198, 486
DpnII GATC 3 cut(s) 20, 196, 484
Eco105I TACGTA 1 cut(s) 522
Eco81I CCTNAGG 1 cut(s) 470
FaeI CATG 4 cut(s) 249, 308, 349, 456
FaqI GGGAC 1 cut(s) 375
FatI CATG 4 cut(s) 245, 304, 345, 452
FauNDI CATATG 1 cut(s) 391
Fnu4HI GCNGC 2 cut(s) 270, 294
Fsp4HI GCNGC 2 cut(s) 270, 294
GlaI GCGC 1 cut(s) 82
GluI GCNGC 2 cut(s) 270, 294
GsuI CTGGAG 1 cut(s) 79
HaeIII GGCC 2 cut(s) 159, 399
HapII CCGG 1 cut(s) 38
HhaI GCGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 4 cut(s) 249, 308, 349, 456
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 3 cut(s) 275, 440, 465
HpaII CCGG 1 cut(s) 38
HphI GGTGA 1 cut(s) 343
Hpy188I TCNGA 3 cut(s) 20, 25, 118
Hpy188III TCNNGA 2 cut(s) 462, 469
Hpy99I CGWCG 1 cut(s) 122
HpyCH4III ACNGT 4 cut(s) 262, 366, 385, 437
HpyCH4IV ACGT 4 cut(s) 9, 120, 180, 521
HpyCH4V TGCA 4 cut(s) 245, 293, 389, 452
HpyF10VI GCNNNNNNNGC 5 cut(s) 87, 96, 217, 251, 411
HpyF3I CTNAG 3 cut(s) 273, 470, 492
HpySE526I ACGT 4 cut(s) 9, 120, 180, 521
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 4 cut(s) 249, 308, 349, 456
HspAI GCGC 1 cut(s) 81
KpnI GGTACC 1 cut(s) 191
Kzo9I GATC 3 cut(s) 20, 196, 484
LmnI GCTCC 1 cut(s) 266
LpnPI CCDG 7 cut(s) 51, 109, 204, 206, 285, 360, 482
Lsp1109I GCAGC 2 cut(s) 281, 305
MaeII ACGT 4 cut(s) 9, 120, 180, 521
MalI GATC 3 cut(s) 22, 198, 486
MboI GATC 3 cut(s) 20, 196, 484
MboII GAAGA 2 cut(s) 16, 509
MflI RGATCY 1 cut(s) 196
MlyI GAGTC 2 cut(s) 284, 449
MmeI TCCRAC 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 205
MspA1I CMGCKG 1 cut(s) 272
MspI CCGG 1 cut(s) 38
MwoI GCNNNNNNNGC 5 cut(s) 87, 96, 217, 251, 411
NdeI CATATG 1 cut(s) 391
NdeII GATC 3 cut(s) 20, 196, 484
NlaIII CATG 4 cut(s) 249, 308, 349, 456
NlaIV GGNNCC 2 cut(s) 189, 198
NmeAIII GCCGAG 1 cut(s) 135
NspI RCATGY 2 cut(s) 349, 456
OliI CACNNNNGTG 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PfeI GAWTC 1 cut(s) 465
PkrI GCNGC 2 cut(s) 271, 295
Ple19I CGATCG 1 cut(s) 23
PleI GAGTC 2 cut(s) 283, 448
PpsI GAGTC 2 cut(s) 283, 448
Ppu21I YACGTR 1 cut(s) 522
PspN4I GGNNCC 2 cut(s) 189, 198
PsuI RGATCY 1 cut(s) 196
PvuI CGATCG 1 cut(s) 23
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
RseI CAYNNNNRTG 1 cut(s) 205
SatI GCNGC 2 cut(s) 270, 294
Sau3AI GATC 3 cut(s) 20, 196, 484
SchI GAGTC 2 cut(s) 284, 449
SetI ASST 9 cut(s) 12, 65, 123, 183, 274, 317, 330, 379, 524
SmiMI CAYNNNNRTG 1 cut(s) 205
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SnaBI TACGTA 1 cut(s) 522
SsiI CCGC 3 cut(s) 57, 88, 428
TaaI ACNGT 4 cut(s) 262, 366, 385, 437
TaiI ACGT 4 cut(s) 12, 123, 183, 524
TaqI TCGA 1 cut(s) 463
TfiI GAWTC 1 cut(s) 465
TscAI CASTG 5 cut(s) 83, 198, 232, 442, 454
TseI GCWGC 2 cut(s) 269, 293
TspDTI ATGAA 2 cut(s) 17, 191
TspRI CASTG 5 cut(s) 83, 198, 232, 442, 454
XceI RCATGY 2 cut(s) 349, 456
ZraI GACGTC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.