AT1G78895

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015095
Physical Location & Seq
Reverse (-)
29658116 .. 29660006
1891 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78895.1

Sequence Viewer

Length: 495 bp
ATGGGAGAAATGGGGAAGGCGATGGGATTGCTGATTAGCGGGACGCTTGTGTATTACCATTGTGCATATCGTAACGCGACTCTTCTCTCTCTCTTCTCCGATGTTTTCATTGTTCTCTTATGCTCTCTCGCCATTCTCGGTCTCCTTTTTCGCCAACTCAATGTCTCGGTACCAGTGGATCCACTAGAGTGGCAAATATCACAGGACACAGCAAGTAACATCGTTGCACGCTTAGCTAATACCGTTGGAGCAGCAGAGGGTGTTCTGAGGGTTGCAGCAACTGGACATGACAAGAGACTTTTTGTCAAGGTCGTAATTTGCCTTTACTTCTTATCAGCGCTTGGGCGACTCATATCAGGTGTAACCGTTGCTTATGCAGGACTATGCTTGTTCTGTCTCTCCATGCTCTGTCAGACTTCTCAATCTCTTGGAAACTGTGTACTAAAGCGAGGAAATGGCCAGATTTTAGAACAAGAAGCACATTCTGATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Reticulon

Protein Analysis

164

Amino Acids

17.63

Weight (kDa)

7.58

Isoelectric Point (pI)

23.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 6 - 131 1.8e-17 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16825 AT1G78895
fragaria_vesca FvH4_6g36900 FvH4_6g36900
malus_domestica MD09G1166000.v1.1 MD17G1161700.v1.1
prunus_persica Prupe.3G023400_v2.0.a1
pyrus_communis pycom17g15490
rosa_chinensis RchiOBHm_Chr2g0149331
rosa_laevigata RLG00000020393
rosa_multiflora Rmu_sc0000873.1_g000016
rosa_roxburghii Rroxscaffold_2G00098210
rosa_rugosa Rorug02G0410600
rosa_samantha Rh2AG471300 Rh2CG457200
rosa_wichuraiana Rw2G038340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 169
AccB1I GGYRCC 1 cut(s) 169
AccII CGCG 1 cut(s) 77
AciI CCGC 1 cut(s) 39
AclWI GGATC 2 cut(s) 173, 186
AcoI YGGCCR 1 cut(s) 457
AfaI GTAC 2 cut(s) 171, 441
AfeI AGCGCT 1 cut(s) 339
AhdI GACNNNNNGTC 1 cut(s) 302
AleI CACNNNNGTG 1 cut(s) 187
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
Alw26I GTCTC 4 cut(s) 146, 169, 289, 401
AlwI GGATC 2 cut(s) 173, 186
AlwNI CAGNNNCTG 1 cut(s) 281
Aor51HI AGCGCT 1 cut(s) 339
AoxI GGCC 1 cut(s) 457
ApeKI GCWGC 2 cut(s) 251, 275
Asp718I GGTACC 1 cut(s) 169
AspLEI GCGC 1 cut(s) 340
BalI TGGCCA 1 cut(s) 459
BamHI GGATCC 1 cut(s) 178
BanI GGYRCC 1 cut(s) 169
BbvI GCAGC 2 cut(s) 263, 287
BccI CCATC 1 cut(s) 16
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BcoDI GTCTC 4 cut(s) 146, 169, 289, 401
BfaI CTAG 1 cut(s) 185
BfoI RGCGCY 1 cut(s) 341
BisI GCNGC 2 cut(s) 252, 276
BlpI GCTNAGC 1 cut(s) 232
BlsI GCNGC 2 cut(s) 253, 277
BmeRI GACNNNNNGTC 1 cut(s) 302
BmiI GGNNCC 2 cut(s) 171, 180
Bpu1102I GCTNAGC 1 cut(s) 232
BsaI GGTCTC 1 cut(s) 146
Bse1I ACTGG 2 cut(s) 173, 286
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 2 cut(s) 173, 286
BseXI GCAGC 2 cut(s) 263, 287
Bsh1236I CGCG 1 cut(s) 77
BshFI GGCC 1 cut(s) 459
BshNI GGYRCC 1 cut(s) 169
BslFI GGGAC 1 cut(s) 55
BsmAI GTCTC 4 cut(s) 146, 169, 289, 401
BsmFI GGGAC 1 cut(s) 55
BsnI GGCC 1 cut(s) 459
Bso31I GGTCTC 1 cut(s) 146
Bsp143I GATC 1 cut(s) 178
Bsp1720I GCTNAGC 1 cut(s) 232
BspACI CCGC 1 cut(s) 39
BspANI GGCC 1 cut(s) 459
BspCNI CTCAG 1 cut(s) 258
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 2 cut(s) 171, 180
BspPI GGATC 2 cut(s) 173, 186
BspT107I GGYRCC 1 cut(s) 169
BspTNI GGTCTC 1 cut(s) 146
BsrI ACTGG 2 cut(s) 173, 286
BssMI GATC 1 cut(s) 178
Bst4CI ACNGT 3 cut(s) 244, 367, 437
Bst6I CTCTTC 2 cut(s) 87, 98
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 2 cut(s) 232, 266
BstFNI CGCG 1 cut(s) 77
BstH2I RGCGCY 1 cut(s) 341
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 1 cut(s) 181
BstMAI GTCTC 4 cut(s) 146, 169, 289, 401
BstMBI GATC 1 cut(s) 178
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 2 cut(s) 263, 287
BstX2I RGATCY 1 cut(s) 178
BstXI CCANNNNNNTGG 1 cut(s) 189
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 1 cut(s) 459
BtgZI GCGATG 1 cut(s) 35
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 229
CaiI CAGNNNCTG 1 cut(s) 281
CfoI GCGC 1 cut(s) 340
CseI GACGC 1 cut(s) 52
Csp6I GTAC 2 cut(s) 170, 440
CviAII CATG 2 cut(s) 287, 403
CviJI RGCY 2 cut(s) 236, 459
CviKI_1 RGCY 2 cut(s) 236, 459
CviQI GTAC 2 cut(s) 170, 440
DdeI CTNAG 2 cut(s) 232, 266
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
DriI GACNNNNNGTC 1 cut(s) 302
EaeI YGGCCR 1 cut(s) 457
Eam1104I CTCTTC 2 cut(s) 87, 98
Eam1105I GACNNNNNGTC 1 cut(s) 302
EarI CTCTTC 2 cut(s) 87, 98
Eco31I GGTCTC 1 cut(s) 146
Eco47III AGCGCT 1 cut(s) 339
FaeI CATG 2 cut(s) 290, 406
FaiI YATR 8 cut(s) 67, 121, 288, 353, 375, 385, 404, 493
FaqI GGGAC 1 cut(s) 55
FatI CATG 2 cut(s) 286, 402
FauI CCCGC 1 cut(s) 32
Fnu4HI GCNGC 2 cut(s) 252, 276
Fsp4HI GCNGC 2 cut(s) 252, 276
FspBI CTAG 1 cut(s) 185
GlaI GCGC 1 cut(s) 339
GluI GCNGC 2 cut(s) 252, 276
HaeII RGCGCY 1 cut(s) 341
HaeIII GGCC 1 cut(s) 459
HgaI GACGC 1 cut(s) 52
HhaI GCGC 1 cut(s) 340
Hin1II CATG 2 cut(s) 290, 406
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HinfI GANTC 2 cut(s) 79, 348
Hpy166II GTNNAC 1 cut(s) 440
Hpy188I TCNGA 4 cut(s) 100, 267, 414, 487
Hpy8I GTNNAC 1 cut(s) 440
HpyAV CCTTC 1 cut(s) 10
HpyCH4III ACNGT 3 cut(s) 244, 367, 437
HpyCH4V TGCA 4 cut(s) 65, 227, 275, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 2 cut(s) 232, 266
Hsp92II CATG 2 cut(s) 290, 406
HspAI GCGC 1 cut(s) 338
KpnI GGTACC 1 cut(s) 173
Kzo9I GATC 1 cut(s) 178
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 6 cut(s) 186, 188, 267, 342, 363, 473
Lsp1109I GCAGC 2 cut(s) 263, 287
MaeI CTAG 1 cut(s) 185
MaeIII GTNAC 3 cut(s) 71, 215, 361
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 2 cut(s) 74, 85
MflI RGATCY 1 cut(s) 178
MlsI TGGCCA 1 cut(s) 459
MluCI AATT 1 cut(s) 315
MluNI TGGCCA 1 cut(s) 459
MlyI GAGTC 2 cut(s) 73, 342
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 3 cut(s) 250, 261, 443
Mox20I TGGCCA 1 cut(s) 459
MscI TGGCCA 1 cut(s) 459
MslI CAYNNNNRTG 1 cut(s) 187
Msp20I TGGCCA 1 cut(s) 459
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeII GATC 1 cut(s) 178
NlaIII CATG 2 cut(s) 290, 406
NlaIV GGNNCC 2 cut(s) 171, 180
OliI CACNNNNGTG 1 cut(s) 187
PkrI GCNGC 2 cut(s) 253, 277
PleI GAGTC 2 cut(s) 73, 342
PpsI GAGTC 2 cut(s) 73, 342
PspN4I GGNNCC 2 cut(s) 171, 180
PstNI CAGNNNCTG 1 cut(s) 281
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 2 cut(s) 171, 441
RsaNI GTAC 2 cut(s) 170, 440
RseI CAYNNNNRTG 1 cut(s) 187
SatI GCNGC 2 cut(s) 252, 276
Sau3AI GATC 1 cut(s) 178
SchI GAGTC 2 cut(s) 73, 342
SetI ASST 3 cut(s) 238, 312, 361
SmiMI CAYNNNNRTG 1 cut(s) 187
Sse9I AATT 1 cut(s) 315
SsiI CCGC 1 cut(s) 39
SspMI CTAG 1 cut(s) 185
TaaI ACNGT 3 cut(s) 244, 367, 437
TaqII GACCGA 1 cut(s) 128
TasI AATT 1 cut(s) 315
TatI WGTACW 1 cut(s) 439
TscAI CASTG 1 cut(s) 180
TseI GCWGC 2 cut(s) 251, 275
TspDTI ATGAA 1 cut(s) 97
TspRI CASTG 1 cut(s) 180
XspI CTAG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.