Rmu_sc0000873.1_g000016

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000873.1
OG0015095
Physical Location & Seq
Reverse (-)
50769 .. 52999
2231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000873.1_g000016.1.cds

Sequence Viewer

Length: 516 bp
atgtaccggtcggaaattggaaagccggtgattgttctcatatgcggcaccttagtctactaccactgcgcccatcggaactcgagcctcgtttctctcgtctccgatgtcctcatcgtcctcctctgctctctcgccattctcggccttctcttccgccaaatgaacatctcggtacctgtggatccacttgagtggcagatttcgcaggacactgcgaatagcattgttgcgtggatagctaatactgtaggagcggctgagtctgtgttgagggttgcggccacggggcatgacaagaggttgtttttcaaggtagtgttttgtctttacgtgctatcagttttgggacggttggtttcaggtcttacagttgcctatactggattatgcttattttgcctttatatgtttgcggagagcagtcagtcgatcagttcatgtttgtctcgttttctggggagaaacaatggccttacagcagaagatactgaagagcaggaggatactatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Reticulon

Protein Analysis

171

Amino Acids

18.78

Weight (kDa)

5.53

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16825 AT1G78895
fragaria_vesca FvH4_6g36900 FvH4_6g36900
malus_domestica MD09G1166000.v1.1 MD17G1161700.v1.1
prunus_persica Prupe.3G023400_v2.0.a1
pyrus_communis pycom17g15490
rosa_chinensis RchiOBHm_Chr2g0149331
rosa_laevigata RLG00000020393
rosa_multiflora Rmu_sc0000873.1_g000016
rosa_roxburghii Rroxscaffold_2G00098210
rosa_rugosa Rorug02G0410600
rosa_samantha Rh2AG471300 Rh2CG457200
rosa_wichuraiana Rw2G038340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 175
AccB1I GGYRCC 2 cut(s) 47, 175
AccBSI CCGCTC 1 cut(s) 257
AccI GTMKAC 1 cut(s) 57
AciI CCGC 5 cut(s) 45, 157, 257, 281, 416
AclWI GGATC 2 cut(s) 179, 192
AcoI YGGCCR 1 cut(s) 282
AcuI CTGAAG 1 cut(s) 513
AfaI GTAC 2 cut(s) 5, 177
AgeI ACCGGT 1 cut(s) 6
AgsI TTSAA 1 cut(s) 313
AleI CACNNNNGTG 1 cut(s) 193
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw26I GTCTC 2 cut(s) 106, 453
AlwI GGATC 2 cut(s) 179, 192
Ama87I CYCGRG 1 cut(s) 82
AoxI GGCC 3 cut(s) 145, 282, 472
AsiGI ACCGGT 1 cut(s) 6
Asp718I GGTACC 1 cut(s) 175
AspLEI GCGC 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 40
AvaI CYCGRG 1 cut(s) 82
BamHI GGATCC 1 cut(s) 184
BanI GGYRCC 2 cut(s) 47, 175
BccI CCATC 1 cut(s) 81
BciVI GTATCC 1 cut(s) 499
BcoDI GTCTC 2 cut(s) 106, 453
BfmI CTRYAG 1 cut(s) 249
BfuI GTATCC 1 cut(s) 499
BisI GCNGC 3 cut(s) 46, 258, 282
BlsI GCNGC 3 cut(s) 47, 259, 283
BmeT110I CYCGRG 1 cut(s) 82
BmiI GGNNCC 3 cut(s) 49, 177, 186
BpuEI CTTGAG 1 cut(s) 212
BsaAI YACGTR 1 cut(s) 334
BsaJI CCNNGG 1 cut(s) 285
BsaWI WCCGGW 1 cut(s) 6
Bse118I RCCGGY 2 cut(s) 6, 25
Bse1I ACTGG 1 cut(s) 388
BseDI CCNNGG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 1 cut(s) 388
BseRI GAGGAG 1 cut(s) 113
Bsh1285I CGRYCG 1 cut(s) 11
BshFI GGCC 3 cut(s) 147, 284, 474
BshNI GGYRCC 2 cut(s) 47, 175
BshTI ACCGGT 1 cut(s) 6
BsiEI CGRYCG 1 cut(s) 11
BsiHKCI CYCGRG 1 cut(s) 82
BsiSI CCGG 2 cut(s) 7, 26
BslFI GGGAC 1 cut(s) 363
BsmAI GTCTC 2 cut(s) 106, 453
BsmBI CGTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 363
BsnI GGCC 3 cut(s) 147, 284, 474
BsoBI CYCGRG 1 cut(s) 82
Bsp143I GATC 2 cut(s) 184, 432
BspACI CCGC 5 cut(s) 45, 157, 257, 281, 416
BspANI GGCC 3 cut(s) 147, 284, 474
BspCNI CTCAG 1 cut(s) 253
BspLI GGNNCC 3 cut(s) 49, 177, 186
BspPI GGATC 2 cut(s) 179, 192
BspQI GCTCTTC 1 cut(s) 489
BspT107I GGYRCC 2 cut(s) 47, 175
BsrBI CCGCTC 1 cut(s) 257
BsrFI RCCGGY 2 cut(s) 6, 25
BsrI ACTGG 1 cut(s) 388
BssAI RCCGGY 2 cut(s) 6, 25
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 2 cut(s) 184, 432
Bst4CI ACNGT 3 cut(s) 250, 354, 373
Bst6I CTCTTC 2 cut(s) 158, 489
BstBAI YACGTR 1 cut(s) 334
BstDEI CTNAG 2 cut(s) 52, 261
BstDSI CCRYGG 1 cut(s) 285
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 2 cut(s) 187, 435
BstMAI GTCTC 2 cut(s) 106, 453
BstMBI GATC 2 cut(s) 184, 432
BstMCI CGRYCG 1 cut(s) 11
BstMWI GCNNNNNNNGC 3 cut(s) 205, 239, 399
BstSFI CTRYAG 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 184
BstXI CCANNNNNNTGG 1 cut(s) 195
BstYI RGATCY 1 cut(s) 184
BsuI GTATCC 1 cut(s) 499
BsuRI GGCC 3 cut(s) 147, 284, 474
BtgI CCRYGG 1 cut(s) 285
BtsI GCAGTG 2 cut(s) 64, 213
BtsIMutI CAGTG 2 cut(s) 64, 213
CfoI GCGC 1 cut(s) 71
Cfr10I RCCGGY 2 cut(s) 6, 25
Csp6I GTAC 2 cut(s) 4, 176
CspAI ACCGGT 1 cut(s) 6
CviAII CATG 2 cut(s) 293, 441
CviJI RGCY 7 cut(s) 25, 87, 147, 242, 260, 284, 474
CviKI_1 RGCY 7 cut(s) 25, 87, 147, 242, 260, 284, 474
CviQI GTAC 2 cut(s) 4, 176
DdeI CTNAG 2 cut(s) 52, 261
DpnI GATC 2 cut(s) 186, 434
DpnII GATC 2 cut(s) 184, 432
EaeI YGGCCR 1 cut(s) 282
Eam1104I CTCTTC 2 cut(s) 158, 489
EarI CTCTTC 2 cut(s) 158, 489
EciI GGCGGA 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 513
Eco88I CYCGRG 1 cut(s) 82
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 2 cut(s) 296, 444
FaiI YATR 9 cut(s) 41, 43, 294, 381, 391, 408, 410, 442, 512
FaqI GGGAC 1 cut(s) 363
FatI CATG 2 cut(s) 292, 440
FauNDI CATATG 1 cut(s) 41
FblI GTMKAC 1 cut(s) 57
Fnu4HI GCNGC 3 cut(s) 46, 258, 282
Fsp4HI GCNGC 3 cut(s) 46, 258, 282
GlaI GCGC 1 cut(s) 70
GluI GCNGC 3 cut(s) 46, 258, 282
HaeIII GGCC 3 cut(s) 147, 284, 474
HapII CCGG 2 cut(s) 7, 26
HhaI GCGC 1 cut(s) 71
Hin1II CATG 2 cut(s) 296, 444
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HinfI GANTC 1 cut(s) 263
HpaII CCGG 2 cut(s) 7, 26
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 3 cut(s) 13, 78, 106
Hpy8I GTNNAC 1 cut(s) 58
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 3 cut(s) 250, 354, 373
HpyCH4IV ACGT 1 cut(s) 333
HpyF10VI GCNNNNNNNGC 3 cut(s) 205, 239, 399
HpyF3I CTNAG 2 cut(s) 52, 261
HpySE526I ACGT 1 cut(s) 333
Hsp92II CATG 2 cut(s) 296, 444
HspAI GCGC 1 cut(s) 69
KpnI GGTACC 1 cut(s) 179
Kzo9I GATC 2 cut(s) 184, 432
LguI GCTCTTC 1 cut(s) 489
LmnI GCTCC 1 cut(s) 254
LpnPI CCDG 8 cut(s) 20, 39, 192, 194, 348, 369, 443, 485
MaeII ACGT 1 cut(s) 333
MalI GATC 2 cut(s) 186, 434
MbiI CCGCTC 1 cut(s) 257
MboI GATC 2 cut(s) 184, 432
MboII GAAGA 3 cut(s) 145, 497, 506
MflI RGATCY 1 cut(s) 184
MluCI AATT 1 cut(s) 15
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 7 cut(s) 98, 122, 131, 134, 267, 294, 496
MslI CAYNNNNRTG 1 cut(s) 193
MspI CCGG 2 cut(s) 7, 26
MwoI GCNNNNNNNGC 3 cut(s) 205, 239, 399
NdeI CATATG 1 cut(s) 41
NdeII GATC 2 cut(s) 184, 432
NlaIII CATG 2 cut(s) 296, 444
NlaIV GGNNCC 3 cut(s) 49, 177, 186
NmeAIII GCCGAG 1 cut(s) 123
OliI CACNNNNGTG 1 cut(s) 193
PaeR7I CTCGAG 1 cut(s) 82
PciSI GCTCTTC 1 cut(s) 489
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PinAI ACCGGT 1 cut(s) 6
PkrI GCNGC 3 cut(s) 47, 259, 283
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
Ppu21I YACGTR 1 cut(s) 334
PspN4I GGNNCC 3 cut(s) 49, 177, 186
PspXI VCTCGAGB 1 cut(s) 82
PsuI RGATCY 1 cut(s) 184
RsaI GTAC 2 cut(s) 5, 177
RsaNI GTAC 2 cut(s) 4, 176
RseI CAYNNNNRTG 1 cut(s) 193
SapI GCTCTTC 1 cut(s) 489
SatI GCNGC 3 cut(s) 46, 258, 282
Sau3AI GATC 2 cut(s) 184, 432
SchI GAGTC 1 cut(s) 272
SetI ASST 7 cut(s) 53, 181, 244, 305, 318, 336, 367
SfcI CTRYAG 1 cut(s) 249
Sfr274I CTCGAG 1 cut(s) 82
SlaI CTCGAG 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 193
SmlI CTYRAG 2 cut(s) 82, 191
SmoI CTYRAG 2 cut(s) 82, 191
Sse9I AATT 1 cut(s) 15
SsiI CCGC 5 cut(s) 45, 157, 257, 281, 416
TaaI ACNGT 3 cut(s) 250, 354, 373
TaiI ACGT 1 cut(s) 336
TaqI TCGA 2 cut(s) 83, 431
TasI AATT 1 cut(s) 15
TauI GCSGC 3 cut(s) 48, 260, 284
TscAI CASTG 2 cut(s) 71, 220
TspDTI ATGAA 2 cut(s) 179, 429
TspRI CASTG 2 cut(s) 71, 220
XhoI CTCGAG 1 cut(s) 82
XmiI GTMKAC 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.