MD17G1161700.v1.1

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0015095
Physical Location & Seq
Forward (+)
15950112 .. 15952310
2199 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1161700.v1.1.491

Sequence Viewer

Length: 606 bp
ATGAAGGAAATGGTGGAAATGGTGGATTACCGATCGGAAGTAGGGAAGCCGGTGGTAGTGCTAATATGCGGAAGCTTAGTCTATTACCACTGCGCCCACCGCAACTCCAGCCTCCTCTCTCTCGTCTCCGACGTCTTCATCGTCCTCCTTTGCTCACTCGCCATTCTCGGCCTCCTCTTTCGCCAAATGAACGTCTCGGTACCAGTGGATCCACTTGAGTGGCAGATTTCACAGGACACTGCTAATAGCATTGTTGCGTGGTTAGCCAATACCGTAGGAGCAGCTGAGTCTGTATTGAGGGTTGCGGCCACAGGGCATGACAAGAGGTTGTTTTTCAAGGTAGTGTTTAGTCTCTACATGCTTTCGGCTTTGGGACGGTTGATTTCAGGTCTTACAGTTGCCTATATTGGACTATGCTTGTTTTGCCTTTATATGGTTGCGGAGAATAGTGAGTCAATCAGTGCATGTTTGTCTCGATTTCTGAGGAGAACAACTGATCTAACCGAGGAAGATGCTGCCGAGAGTGATACCGTACAAATTGTTGATTACATGACCCTATTGCTGAATAAATGCTGGTTTTTGCTACAACCTTGTGCCTTTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Reticulon

Protein Analysis

202

Amino Acids

22.35

Weight (kDa)

5.14

Isoelectric Point (pI)

42.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 18 - 141 1.1e-16 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16825 AT1G78895
fragaria_vesca FvH4_6g36900 FvH4_6g36900
malus_domestica MD09G1166000.v1.1 MD17G1161700.v1.1
prunus_persica Prupe.3G023400_v2.0.a1
pyrus_communis pycom17g15490
rosa_chinensis RchiOBHm_Chr2g0149331
rosa_laevigata RLG00000020393
rosa_multiflora Rmu_sc0000873.1_g000016
rosa_roxburghii Rroxscaffold_2G00098210
rosa_rugosa Rorug02G0410600
rosa_samantha Rh2AG471300 Rh2CG457200
rosa_wichuraiana Rw2G038340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 135
Acc65I GGTACC 1 cut(s) 199
AccB1I GGYRCC 1 cut(s) 199
AciI CCGC 4 cut(s) 69, 100, 305, 440
AclWI GGATC 2 cut(s) 203, 216
AcoI YGGCCR 1 cut(s) 306
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 2 cut(s) 201, 534
AfiI CCNNNNNNNGG 1 cut(s) 433
AgsI TTSAA 1 cut(s) 337
AleI CACNNNNGTG 1 cut(s) 217
AluBI AGCT 2 cut(s) 75, 284
AluI AGCT 2 cut(s) 75, 284
Alw26I GTCTC 4 cut(s) 130, 199, 356, 477
AlwI GGATC 2 cut(s) 203, 216
AoxI GGCC 2 cut(s) 169, 306
ApeKI GCWGC 2 cut(s) 281, 515
Asp718I GGTACC 1 cut(s) 199
AspLEI GCGC 1 cut(s) 95
BamHI GGATCC 1 cut(s) 208
BanI GGYRCC 1 cut(s) 199
BbsI GAAGAC 1 cut(s) 127
BbvI GCAGC 2 cut(s) 293, 502
BcgI CGANNNNNNTGC 2 cut(s) 494, 528
BcoDI GTCTC 4 cut(s) 130, 199, 356, 477
BisI GCNGC 3 cut(s) 282, 306, 516
BlsI GCNGC 3 cut(s) 283, 307, 517
BmiI GGNNCC 2 cut(s) 201, 210
BmsI GCATC 1 cut(s) 502
BpiI GAAGAC 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 91
BpuEI CTTGAG 1 cut(s) 236
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 504
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 1 cut(s) 433
Bse118I RCCGGY 1 cut(s) 49
Bse1I ACTGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 504
BseLI CCNNNNNNNGG 1 cut(s) 433
BseMII CTCAG 2 cut(s) 276, 473
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 3 cut(s) 104, 164, 499
BseXI GCAGC 2 cut(s) 293, 502
Bsh1285I CGRYCG 1 cut(s) 35
BshFI GGCC 2 cut(s) 171, 308
BshNI GGYRCC 1 cut(s) 199
BsiEI CGRYCG 1 cut(s) 35
BsiSI CCGG 1 cut(s) 50
BslFI GGGAC 1 cut(s) 387
BslI CCNNNNNNNGG 1 cut(s) 433
BsmAI GTCTC 4 cut(s) 130, 199, 356, 477
BsmBI CGTCTC 2 cut(s) 130, 199
BsmFI GGGAC 1 cut(s) 387
BsnI GGCC 2 cut(s) 171, 308
Bsp143I GATC 3 cut(s) 32, 208, 496
BspACI CCGC 4 cut(s) 69, 100, 305, 440
BspANI GGCC 2 cut(s) 171, 308
BspCNI CTCAG 2 cut(s) 277, 474
BspLI GGNNCC 2 cut(s) 201, 210
BspPI GGATC 2 cut(s) 203, 216
BspT107I GGYRCC 1 cut(s) 199
BsrFI RCCGGY 1 cut(s) 49
BsrI ACTGG 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 504
BssMI GATC 3 cut(s) 32, 208, 496
BssNI GRCGYC 1 cut(s) 132
Bst4CI ACNGT 4 cut(s) 274, 378, 397, 532
BstACI GRCGYC 1 cut(s) 132
BstDEI CTNAG 3 cut(s) 76, 285, 482
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 3 cut(s) 35, 211, 499
BstMAI GTCTC 4 cut(s) 130, 199, 356, 477
BstMBI GATC 3 cut(s) 32, 208, 496
BstMCI CGRYCG 1 cut(s) 35
BstMWI GCNNNNNNNGC 4 cut(s) 99, 108, 263, 423
BstNSI RCATGY 2 cut(s) 361, 468
BstV1I GCAGC 2 cut(s) 293, 502
BstV2I GAAGAC 1 cut(s) 127
BstX2I RGATCY 1 cut(s) 208
BstXI CCANNNNNNTGG 1 cut(s) 219
BstYI RGATCY 1 cut(s) 208
BsuRI GGCC 2 cut(s) 171, 308
BtsI GCAGTG 2 cut(s) 88, 237
BtsIMutI CAGTG 4 cut(s) 88, 210, 237, 466
CfoI GCGC 1 cut(s) 95
Cfr10I RCCGGY 1 cut(s) 49
Csp6I GTAC 2 cut(s) 200, 533
CviAII CATG 4 cut(s) 317, 358, 465, 550
CviJI RGCY 8 cut(s) 49, 75, 111, 171, 266, 284, 308, 368
CviKI_1 RGCY 8 cut(s) 49, 75, 111, 171, 266, 284, 308, 368
CviQI GTAC 2 cut(s) 200, 533
DdeI CTNAG 3 cut(s) 76, 285, 482
DpnI GATC 3 cut(s) 34, 210, 498
DpnII GATC 3 cut(s) 32, 208, 496
EaeI YGGCCR 1 cut(s) 306
Esp3I CGTCTC 2 cut(s) 130, 199
FaeI CATG 4 cut(s) 320, 361, 468, 553
FaiI YATR 9 cut(s) 67, 318, 359, 405, 415, 432, 434, 466, 551
FaqI GGGAC 1 cut(s) 387
FatI CATG 4 cut(s) 316, 357, 464, 549
Fnu4HI GCNGC 3 cut(s) 282, 306, 516
Fsp4HI GCNGC 3 cut(s) 282, 306, 516
GlaI GCGC 1 cut(s) 94
GluI GCNGC 3 cut(s) 282, 306, 516
GsuI CTGGAG 1 cut(s) 91
HaeIII GGCC 2 cut(s) 171, 308
HapII CCGG 1 cut(s) 50
HhaI GCGC 1 cut(s) 95
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 4 cut(s) 320, 361, 468, 553
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HindIII AAGCTT 1 cut(s) 73
HinfI GANTC 2 cut(s) 287, 452
HpaII CCGG 1 cut(s) 50
Hpy188I TCNGA 3 cut(s) 37, 130, 483
Hpy188III TCNNGA 1 cut(s) 474
Hpy99I CGWCG 1 cut(s) 134
HpyCH4III ACNGT 4 cut(s) 274, 378, 397, 532
HpyCH4IV ACGT 2 cut(s) 132, 192
HpyCH4V TGCA 1 cut(s) 464
HpyF10VI GCNNNNNNNGC 4 cut(s) 99, 108, 263, 423
HpyF3I CTNAG 3 cut(s) 76, 285, 482
HpySE526I ACGT 2 cut(s) 132, 192
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 4 cut(s) 320, 361, 468, 553
HspAI GCGC 1 cut(s) 93
KpnI GGTACC 1 cut(s) 203
Kzo9I GATC 3 cut(s) 32, 208, 496
LmnI GCTCC 1 cut(s) 278
LpnPI CCDG 7 cut(s) 63, 121, 216, 218, 297, 372, 559
Lsp1109I GCAGC 2 cut(s) 293, 502
LweI GCATC 1 cut(s) 502
MaeII ACGT 2 cut(s) 132, 192
MalI GATC 3 cut(s) 34, 210, 498
MboI GATC 3 cut(s) 32, 208, 496
MboII GAAGA 2 cut(s) 127, 521
MflI RGATCY 1 cut(s) 208
MluCI AATT 1 cut(s) 537
MlyI GAGTC 2 cut(s) 296, 461
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 9 cut(s) 122, 125, 155, 182, 185, 291, 318, 477, 499
MseI TTAA 1 cut(s) 604
MslI CAYNNNNRTG 1 cut(s) 217
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 1 cut(s) 50
MwoI GCNNNNNNNGC 4 cut(s) 99, 108, 263, 423
NdeII GATC 3 cut(s) 32, 208, 496
NlaIII CATG 4 cut(s) 320, 361, 468, 553
NlaIV GGNNCC 2 cut(s) 201, 210
NmeAIII GCCGAG 2 cut(s) 147, 544
NspI RCATGY 2 cut(s) 361, 468
OliI CACNNNNGTG 1 cut(s) 217
PcsI WCGNNNNNNNCGW 2 cut(s) 129, 138
PkrI GCNGC 3 cut(s) 283, 307, 517
Ple19I CGATCG 1 cut(s) 35
PleI GAGTC 2 cut(s) 295, 460
PpsI GAGTC 2 cut(s) 295, 460
PspN4I GGNNCC 2 cut(s) 201, 210
PsuI RGATCY 1 cut(s) 208
PvuI CGATCG 1 cut(s) 35
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 2 cut(s) 201, 534
RsaNI GTAC 2 cut(s) 200, 533
RseI CAYNNNNRTG 1 cut(s) 217
SaqAI TTAA 1 cut(s) 604
SatI GCNGC 3 cut(s) 282, 306, 516
Sau3AI GATC 3 cut(s) 32, 208, 496
SchI GAGTC 2 cut(s) 296, 461
SetI ASST 8 cut(s) 77, 135, 195, 286, 329, 342, 391, 592
SfaNI GCATC 1 cut(s) 502
SmiMI CAYNNNNRTG 1 cut(s) 217
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 1 cut(s) 537
SsiI CCGC 4 cut(s) 69, 100, 305, 440
TaaI ACNGT 4 cut(s) 274, 378, 397, 532
TaiI ACGT 2 cut(s) 135, 195
TaqI TCGA 1 cut(s) 475
TasI AATT 1 cut(s) 537
TauI GCSGC 1 cut(s) 308
Tru1I TTAA 1 cut(s) 604
Tru9I TTAA 1 cut(s) 604
TscAI CASTG 4 cut(s) 95, 210, 244, 466
TseI GCWGC 2 cut(s) 281, 515
TspDTI ATGAA 3 cut(s) 17, 127, 203
TspRI CASTG 4 cut(s) 95, 210, 244, 466
XceI RCATGY 2 cut(s) 361, 468
ZraI GACGTC 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.