Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011958

Physical Location & Seq

Genomic Coordinates Reverse (-)

5764807 .. 5765798

Gene Structure 992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G16850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCTGAAAAAGTAAAGTCTGGTCAAGTTTTTAACCTATTATGCATATTCTCGATCTTTTTCTTCCTCTTTGTGTTATCAGTGAATGTTTCGGCTGATGTCGATTCTGAGAGAGCGGTGCCATCTGAAGATAAAACGACGACTGTTTGGCTAACTAAAATCAAACGGTCCGGTAAAAATTATTGGGCTAAAGTTAGAGAGACTTTGGATCGTGGACAGTCCCACTTCTTTCCTCCGAACACATATTTTACCGGAAAGAATGATGCGCCGATGGGAGCCGGTGAAAATATGAAAGAGGCGGCGACGAGGAGCTTTGAGCATAGCAAAGCGACGGTGGAGGAAGCTGCTAGATCAGCGGCAGAAGTGGTGAGTGATACGGCGGAAGCTGTGAAAGAAAAGGTGAAGAGGAGCGTTTCCGGTGGAGTGACGCAGCCGTCGGAGGGATCTGAGGAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

16.7

Weight (kDa)

6.16

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16850 AT5G64820
fragaria_vesca	FvH4_1g22760 FvH4_1g22760
malus_domestica	MD01G1020600.v1.1
prunus_persica	Prupe.6G170400_v2.0.a1 Prupe.6G170400_v2.0.a1
pyrus_communis	pycom01g05080
rosa_chinensis	RchiOBHm_Chr2g0117081
rosa_laevigata	RLG00000018327
rosa_multiflora	Rmu_sc0027521.1_g000003
rosa_roxburghii	Rroxscaffold_2G00126730
rosa_rugosa	Rorug02G0210000 Rorug02G0210100
rosa_samantha	Rh2AG266000 Rh2BG278000 Rh2DG273200 Rh2DG292300
rosa_wichuraiana	Rw2G020990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	433
AccB1I	GGYRCC	1 cut(s)	118
AccBSI	CCGCTC	1 cut(s)	116
AciI	CCGC	4 cut(s)	116, 299, 356, 380
AclWI	GGATC	2 cut(s)	216, 451
AcuI	CTGAAG	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	440
AluBI	AGCT	4 cut(s)	312, 344, 386, 454
AluI	AGCT	4 cut(s)	312, 344, 386, 454
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	2 cut(s)	216, 451
ApeKI	GCWGC	2 cut(s)	344, 430
AspLEI	GCGC	1 cut(s)	268
AspS9I	GGNCC	1 cut(s)	168
AsuHPI	GGTGA	3 cut(s)	293, 379, 412
AvaII	GGWCC	1 cut(s)	168
BanI	GGYRCC	1 cut(s)	118
BbvI	GCAGC	2 cut(s)	331, 442
BccI	CCATC	2 cut(s)	130, 265
BceAI	ACGGC	2 cut(s)	393, 418
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	1 cut(s)	348
BisI	GCNGC	4 cut(s)	300, 345, 357, 431
BlsI	GCNGC	4 cut(s)	301, 346, 358, 432
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	168
BmiI	GGNNCC	2 cut(s)	120, 277
BmsI	GCATC	1 cut(s)	253
BsaWI	WCCGGW	3 cut(s)	170, 251, 416
Bsc4I	CCNNNNNNNGG	1 cut(s)	440
Bse118I	RCCGGY	1 cut(s)	278
BseLI	CCNNNNNNNGG	1 cut(s)	440
BseMII	CTCAG	2 cut(s)	99, 438
BseRI	GAGGAG	2 cut(s)	322, 421
BseXI	GCAGC	2 cut(s)	331, 442
BshNI	GGYRCC	1 cut(s)	118
BsiSI	CCGG	4 cut(s)	171, 252, 279, 417
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	440
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	205
Bsp143I	GATC	4 cut(s)	54, 208, 350, 443
BspACI	CCGC	4 cut(s)	116, 299, 356, 380
BspCNI	CTCAG	2 cut(s)	100, 439
BspLI	GGNNCC	2 cut(s)	120, 277
BspPI	GGATC	2 cut(s)	216, 451
BspT107I	GGYRCC	1 cut(s)	118
BsrBI	CCGCTC	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	278
BssAI	RCCGGY	1 cut(s)	278
BssMI	GATC	4 cut(s)	54, 208, 350, 443
Bst4CI	ACNGT	4 cut(s)	145, 168, 219, 334
Bst6I	CTCTTC	1 cut(s)	398
BstDEI	CTNAG	2 cut(s)	108, 447
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	4 cut(s)	57, 211, 353, 446
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	4 cut(s)	54, 208, 350, 443
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstV1I	GCAGC	2 cut(s)	331, 442
BstX2I	RGATCY	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	443
BtsIMutI	CAGTG	1 cut(s)	87
CfoI	GCGC	1 cut(s)	268
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	168
CpoI	CGGWCCG	1 cut(s)	168
CseI	GACGC	1 cut(s)	436
CspI	CGGWCCG	1 cut(s)	168
DdeI	CTNAG	2 cut(s)	108, 447
DpnI	GATC	4 cut(s)	56, 210, 352, 445
DpnII	GATC	4 cut(s)	54, 208, 350, 443
DrdI	GACNNNNNNGTC	1 cut(s)	433
DseDI	GACNNNNNNGTC	1 cut(s)	433
Eam1104I	CTCTTC	1 cut(s)	398
EarI	CTCTTC	1 cut(s)	398
EciI	GGCGGA	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	147
EcoT22I	ATGCAT	1 cut(s)	47
FaiI	YATR	6 cut(s)	43, 47, 244, 290, 321, 457
FaqI	GGGAC	1 cut(s)	205
Fnu4HI	GCNGC	4 cut(s)	300, 345, 357, 431
Fsp4HI	GCNGC	4 cut(s)	300, 345, 357, 431
FspBI	CTAG	1 cut(s)	348
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	4 cut(s)	300, 345, 357, 431
HapII	CCGG	4 cut(s)	171, 252, 279, 417
HgaI	GACGC	1 cut(s)	436
HhaI	GCGC	1 cut(s)	268
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HinfI	GANTC	1 cut(s)	104
HpaII	CCGG	4 cut(s)	171, 252, 279, 417
HphI	GGTGA	3 cut(s)	293, 379, 412
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	5 cut(s)	109, 127, 237, 439, 448
Hpy188III	TCNNGA	1 cut(s)	52
Hpy8I	GTNNAC	1 cut(s)	215
Hpy99I	CGWCG	4 cut(s)	142, 307, 334, 439
HpyCH4III	ACNGT	4 cut(s)	145, 168, 219, 334
HpyCH4V	TGCA	1 cut(s)	45
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	2 cut(s)	108, 447
HspAI	GCGC	1 cut(s)	266
Kzo9I	GATC	4 cut(s)	54, 208, 350, 443
LmnI	GCTCC	4 cut(s)	275, 309, 408, 451
LpnPI	CCDG	5 cut(s)	6, 184, 265, 292, 430
Lsp1109I	GCAGC	2 cut(s)	331, 442
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	4 cut(s)	56, 210, 352, 445
MbiI	CCGCTC	1 cut(s)	116
MboI	GATC	4 cut(s)	54, 208, 350, 443
MboII	GAAGA	3 cut(s)	55, 140, 415
MflI	RGATCY	1 cut(s)	443
MluCI	AATT	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	417
MnlI	CCTC	8 cut(s)	77, 243, 289, 300, 331, 399, 433, 442
Mph1103I	ATGCAT	1 cut(s)	47
MseI	TTAA	1 cut(s)	33
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	4 cut(s)	171, 252, 279, 417
MwoI	GCNNNNNNNGC	1 cut(s)	353
NdeII	GATC	4 cut(s)	54, 208, 350, 443
NlaIV	GGNNCC	2 cut(s)	120, 277
NmuCI	GTSAC	1 cut(s)	424
NsiI	ATGCAT	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	4 cut(s)	301, 346, 358, 432
PspN4I	GGNNCC	2 cut(s)	120, 277
PspPI	GGNCC	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	443
Rsr2I	CGGWCCG	1 cut(s)	168
RsrII	CGGWCCG	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	4 cut(s)	300, 345, 357, 431
Sau3AI	GATC	4 cut(s)	54, 208, 350, 443
Sau96I	GGNCC	1 cut(s)	168
SetI	ASST	6 cut(s)	39, 314, 346, 388, 402, 456
SfaNI	GCATC	1 cut(s)	253
SinI	GGWCC	1 cut(s)	168
Sse9I	AATT	1 cut(s)	178
SsiI	CCGC	4 cut(s)	116, 299, 356, 380
SspMI	CTAG	1 cut(s)	348
TaaI	ACNGT	4 cut(s)	145, 168, 219, 334
TaqI	TCGA	2 cut(s)	53, 102
TasI	AATT	1 cut(s)	178
TauI	GCSGC	2 cut(s)	302, 359
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	2 cut(s)	344, 430
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	1 cut(s)	305
TspRI	CASTG	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	168
XspI	CTAG	1 cut(s)	348
Zsp2I	ATGCAT	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.