AT5G64820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011958
Physical Location & Seq
Reverse (-)
25913999 .. 25914523
525 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G64820.1

Sequence Viewer

Length: 438 bp
ATGAATGGATCAAGAAGAATAAGATTCGGCGTCTCAGTCTTCTGCATCATCATCATTTTGATATCCGGGGTATCTGCAGATGGAGCGGAAAGTGATAGTGCCGCGAAGAAAGAAGAGAATCCATCGATTGTAAAGATCATAAGTGGGATTTTTGGCAACAAGTTTCCTCCGAGTTCATGGGAATTGATTCAAGGTGCAATGCAGAAGATCCAGATGAAGCTTTACCCTCCAAATCTAGATTTCAGAAGCAACAGCGACAAAAGCAACATAGAGGAAGAAGATAAAGCAGAGAAAGTGAGAGAAGCAGCTACAAGGAGTCTAGAAGTAAGCAAAGAAGCCATTGAAGAGTCTGCAAAACTAGCAGGAGATGTTGTAGGTGAAGTAGTTCAGAAAACAGCTGAGAAAGTTACTAAACAAACCTCACATGATGAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

15.89

Weight (kDa)

5.33

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011958)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16850 AT5G64820
fragaria_vesca FvH4_1g22760 FvH4_1g22760
malus_domestica MD01G1020600.v1.1
prunus_persica Prupe.6G170400_v2.0.a1 Prupe.6G170400_v2.0.a1
pyrus_communis pycom01g05080
rosa_chinensis RchiOBHm_Chr2g0117081
rosa_laevigata RLG00000018327
rosa_multiflora Rmu_sc0027521.1_g000003
rosa_roxburghii Rroxscaffold_2G00126730
rosa_rugosa Rorug02G0210000 Rorug02G0210100
rosa_samantha Rh2AG266000 Rh2BG278000 Rh2DG273200 Rh2DG292300
rosa_wichuraiana Rw2G020990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 86
AccII CGCG 1 cut(s) 104
AciI CCGC 2 cut(s) 86, 102
AclWI GGATC 2 cut(s) 16, 202
AcyI GRCGYC 1 cut(s) 30
AgsI TTSAA 2 cut(s) 191, 344
AluBI AGCT 3 cut(s) 220, 308, 398
AluI AGCT 3 cut(s) 220, 308, 398
Alw26I GTCTC 1 cut(s) 37
AlwI GGATC 2 cut(s) 16, 202
ApeKI GCWGC 1 cut(s) 305
Asp700I GAANNNNTTC 2 cut(s) 186, 384
AsuC2I CCSGG 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 389
BbsI GAAGAC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 317
BccI CCATC 2 cut(s) 74, 130
BcnI CCSGG 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 3 cut(s) 236, 320, 359
BfmI CTRYAG 1 cut(s) 75
BisI GCNGC 2 cut(s) 102, 306
BlsI GCNGC 2 cut(s) 103, 307
Bme1390I CCNGG 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 67
BmsI GCATC 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 31
BpuMI CCSGG 1 cut(s) 67
Bsa29I ATCGAT 1 cut(s) 125
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 66
BsaXI ACNNNNNCTCC 2 cut(s) 357, 387
Bse3DI GCAATG 1 cut(s) 204
BseCI ATCGAT 1 cut(s) 125
BseDI CCNNGG 1 cut(s) 66
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 2 cut(s) 48, 390
BseXI GCAGC 1 cut(s) 317
Bsh1236I CGCG 1 cut(s) 104
BshVI ATCGAT 1 cut(s) 125
BsiSI CCGG 1 cut(s) 66
BsmAI GTCTC 1 cut(s) 37
BsmBI CGTCTC 1 cut(s) 37
Bsp143I GATC 3 cut(s) 8, 135, 207
BspACI CCGC 2 cut(s) 86, 102
BspCNI CTCAG 2 cut(s) 47, 391
BspDI ATCGAT 1 cut(s) 125
BspFNI CGCG 1 cut(s) 104
BspMAI CTGCAG 1 cut(s) 79
BspPI GGATC 2 cut(s) 16, 202
BsrBI CCGCTC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 204
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 3 cut(s) 8, 135, 207
BssNI GRCGYC 1 cut(s) 30
Bst6I CTCTTC 2 cut(s) 108, 339
BstACI GRCGYC 1 cut(s) 30
BstDEI CTNAG 2 cut(s) 34, 399
BstFNI CGCG 1 cut(s) 104
BstKTI GATC 3 cut(s) 11, 138, 210
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 3 cut(s) 8, 135, 207
BstMWI GCNNNNNNNGC 3 cut(s) 83, 261, 359
BstSCI CCNGG 1 cut(s) 65
BstSFI CTRYAG 1 cut(s) 75
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 317
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 207
BstYI RGATCY 1 cut(s) 207
Bsu15I ATCGAT 1 cut(s) 125
BsuTUI ATCGAT 1 cut(s) 125
ClaI ATCGAT 1 cut(s) 125
CseI GACGC 1 cut(s) 19
CviAII CATG 2 cut(s) 177, 425
CviJI RGCY 4 cut(s) 220, 308, 338, 398
CviKI_1 RGCY 4 cut(s) 220, 308, 338, 398
DdeI CTNAG 2 cut(s) 34, 399
DpnI GATC 3 cut(s) 10, 137, 209
DpnII GATC 3 cut(s) 8, 135, 207
Eam1104I CTCTTC 2 cut(s) 108, 339
EarI CTCTTC 2 cut(s) 108, 339
Eco32I GATATC 1 cut(s) 63
EcoRV GATATC 1 cut(s) 63
Esp3I CGTCTC 1 cut(s) 37
FaeI CATG 2 cut(s) 180, 428
FaiI YATR 4 cut(s) 140, 178, 269, 426
FatI CATG 2 cut(s) 176, 424
Fnu4HI GCNGC 2 cut(s) 102, 306
Fsp4HI GCNGC 2 cut(s) 102, 306
FspBI CTAG 3 cut(s) 236, 320, 359
GluI GCNGC 2 cut(s) 102, 306
HapII CCGG 1 cut(s) 66
HgaI GACGC 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 2 cut(s) 180, 428
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 5 cut(s) 24, 118, 187, 316, 347
HpaII CCGG 1 cut(s) 66
HphI GGTGA 1 cut(s) 389
Hpy188I TCNGA 3 cut(s) 171, 245, 390
Hpy188III TCNNGA 4 cut(s) 12, 211, 236, 320
HpyCH4V TGCA 5 cut(s) 45, 77, 197, 202, 353
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 261, 359
HpyF3I CTNAG 2 cut(s) 34, 399
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 2 cut(s) 180, 428
Kzo9I GATC 3 cut(s) 8, 135, 207
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 3 cut(s) 79, 224, 348
Lsp1109I GCAGC 1 cut(s) 317
LweI GCATC 1 cut(s) 54
MaeI CTAG 3 cut(s) 236, 320, 359
MaeIII GTNAC 1 cut(s) 406
MalI GATC 3 cut(s) 10, 137, 209
MbiI CCGCTC 1 cut(s) 86
MboI GATC 3 cut(s) 8, 135, 207
MboII GAAGA 8 cut(s) 27, 31, 118, 125, 217, 287, 290, 356
MflI RGATCY 1 cut(s) 207
MluCI AATT 1 cut(s) 182
MlyI GAGTC 2 cut(s) 325, 356
MnlI CCTC 4 cut(s) 177, 237, 265, 430
MroXI GAANNNNTTC 2 cut(s) 186, 384
MspA1I CMGCKG 1 cut(s) 398
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 1 cut(s) 67
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 3 cut(s) 83, 261, 359
NciI CCSGG 1 cut(s) 67
NdeII GATC 3 cut(s) 8, 135, 207
NlaIII CATG 2 cut(s) 180, 428
PdmI GAANNNNTTC 2 cut(s) 186, 384
PfeI GAWTC 3 cut(s) 24, 118, 187
PkrI GCNGC 2 cut(s) 103, 307
PleI GAGTC 2 cut(s) 324, 355
PpsI GAGTC 2 cut(s) 324, 355
PstI CTGCAG 1 cut(s) 79
PsuI RGATCY 1 cut(s) 207
PvuII CAGCTG 1 cut(s) 398
SatI GCNGC 2 cut(s) 102, 306
Sau3AI GATC 3 cut(s) 8, 135, 207
SchI GAGTC 2 cut(s) 325, 356
ScrFI CCNGG 1 cut(s) 67
SetI ASST 6 cut(s) 196, 222, 310, 379, 400, 422
SfaNI GCATC 1 cut(s) 54
SfcI CTRYAG 1 cut(s) 75
Sse9I AATT 1 cut(s) 182
SsiI CCGC 2 cut(s) 86, 102
SspMI CTAG 3 cut(s) 236, 320, 359
StyD4I CCNGG 1 cut(s) 65
TaqI TCGA 1 cut(s) 125
TasI AATT 1 cut(s) 182
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 3 cut(s) 24, 118, 187
TseI GCWGC 1 cut(s) 305
TspDTI ATGAA 3 cut(s) 17, 165, 230
XbaI TCTAGA 2 cut(s) 235, 319
XmnI GAANNNNTTC 2 cut(s) 186, 384
XspI CTAG 3 cut(s) 236, 320, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.