FvH4_1g22760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011958
Physical Location & Seq
Forward (+)
14724857 .. 14725884
1028 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22760.t1

Sequence Viewer

Length: 429 bp
ATGGACAAATTTAGCAGGAGAACTGCACTTCTCCTCTTCTGGTTCATCATCGTTTCACTTCAGATTCCGAGAACAATCGGAGAAGAACAGAATGAGGAAGAGCAAACCTATTTTACAAGGACACTGTCTGTGCTGCAAGACACGGTCTCTATGCTGCAAAAGTCTCATCAAGCTGCCTGGGATAAGATGAAAACCACCATAGCAGATATGCAAATGCAGTTTATGCCTCCATCTATAGAGGGGGATGATAAAAAGGACGAAACTGAGGAAGGCGTGGGAGAGAAGATGAAAGACGCAGCTCAGAAGAGTTTCGAAACAAGCAAACATACAGTAGAGGAATCAGCTAAAACAGCCGCTGATGCTGTGCACAAGACAGCAGAGAAGGTAAAGGAAGTTGTTACCAATGATGAGACTAGCGCAGAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.15

Weight (kDa)

4.85

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011958)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16850 AT5G64820
fragaria_vesca FvH4_1g22760 FvH4_1g22760
malus_domestica MD01G1020600.v1.1
prunus_persica Prupe.6G170400_v2.0.a1 Prupe.6G170400_v2.0.a1
pyrus_communis pycom01g05080
rosa_chinensis RchiOBHm_Chr2g0117081
rosa_laevigata RLG00000018327
rosa_multiflora Rmu_sc0027521.1_g000003
rosa_roxburghii Rroxscaffold_2G00126730
rosa_rugosa Rorug02G0210000 Rorug02G0210100
rosa_samantha Rh2AG266000 Rh2BG278000 Rh2DG273200 Rh2DG292300
rosa_wichuraiana Rw2G020990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 354
AcsI RAATTY 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 44
AjnI CCWGG 1 cut(s) 176
AluBI AGCT 4 cut(s) 173, 299, 344, 424
AluI AGCT 4 cut(s) 173, 299, 344, 424
Alw21I GWGCWC 1 cut(s) 369
Alw26I GTCTC 3 cut(s) 151, 168, 404
Alw44I GTGCAC 1 cut(s) 365
AlwNI CAGNNNCTG 1 cut(s) 356
ApaLI GTGCAC 1 cut(s) 365
ApeKI GCWGC 4 cut(s) 133, 154, 173, 296
ApoI RAATTY 1 cut(s) 8
Asp700I GAANNNNTTC 1 cut(s) 308
AspLEI GCGC 1 cut(s) 419
AsuII TTCGAA 1 cut(s) 312
BaeGI GKGCMC 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 369
BbvI GCAGC 4 cut(s) 120, 141, 160, 308
BccI CCATC 1 cut(s) 238
BciT130I CCWGG 1 cut(s) 178
BcoDI GTCTC 3 cut(s) 151, 168, 404
BfaI CTAG 1 cut(s) 414
BfmI CTRYAG 1 cut(s) 234
BisI GCNGC 5 cut(s) 134, 155, 174, 297, 354
BlsI GCNGC 5 cut(s) 135, 156, 175, 298, 355
Bme1390I CCNGG 1 cut(s) 178
BmrFI CCNGG 1 cut(s) 178
BmsI GCATC 1 cut(s) 349
Bpu14I TTCGAA 1 cut(s) 312
BsaI GGTCTC 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 1 cut(s) 250
BseMII CTCAG 2 cut(s) 255, 314
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 369
BseXI GCAGC 4 cut(s) 120, 141, 160, 308
BsgI GTGCAG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 369
BsmAI GTCTC 3 cut(s) 151, 168, 404
Bso31I GGTCTC 1 cut(s) 151
Bsp119I TTCGAA 1 cut(s) 312
Bsp1286I GDGCHC 1 cut(s) 369
BspACI CCGC 1 cut(s) 354
BspCNI CTCAG 2 cut(s) 256, 313
BspQI GCTCTTC 1 cut(s) 93
BspT104I TTCGAA 1 cut(s) 312
BspTNI GGTCTC 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 178
Bst4CI ACNGT 3 cut(s) 126, 145, 331
Bst6I CTCTTC 3 cut(s) 41, 93, 299
BstAPI GCANNNNNTGC 1 cut(s) 223
BstBI TTCGAA 1 cut(s) 312
BstDEI CTNAG 2 cut(s) 264, 300
BstF5I GGATG 1 cut(s) 250
BstHHI GCGC 1 cut(s) 419
BstMAI GTCTC 3 cut(s) 151, 168, 404
BstMWI GCNNNNNNNGC 3 cut(s) 223, 350, 359
BstNI CCWGG 1 cut(s) 178
BstSCI CCNGG 1 cut(s) 176
BstSFI CTRYAG 1 cut(s) 234
BstSLI GKGCMC 1 cut(s) 369
BstV1I GCAGC 4 cut(s) 120, 141, 160, 308
BtsCI GGATG 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 122
CaiI CAGNNNCTG 1 cut(s) 356
CfoI GCGC 1 cut(s) 419
CseI GACGC 1 cut(s) 302
CviJI RGCY 5 cut(s) 173, 299, 344, 353, 424
CviKI_1 RGCY 5 cut(s) 173, 299, 344, 353, 424
DdeI CTNAG 2 cut(s) 264, 300
Eam1104I CTCTTC 3 cut(s) 41, 93, 299
EarI CTCTTC 3 cut(s) 41, 93, 299
Eco31I GGTCTC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 176
FaiI YATR 6 cut(s) 152, 200, 209, 224, 236, 327
Fnu4HI GCNGC 5 cut(s) 134, 155, 174, 297, 354
FokI GGATG 1 cut(s) 257
Fsp4HI GCNGC 5 cut(s) 134, 155, 174, 297, 354
FspBI CTAG 1 cut(s) 414
GlaI GCGC 1 cut(s) 418
GluI GCNGC 5 cut(s) 134, 155, 174, 297, 354
HgaI GACGC 1 cut(s) 302
HhaI GCGC 1 cut(s) 419
Hin6I GCGC 1 cut(s) 417
HinP1I GCGC 1 cut(s) 417
HinfI GANTC 2 cut(s) 64, 338
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 4 cut(s) 63, 69, 80, 303
Hpy8I GTNNAC 1 cut(s) 367
HpyAV CCTTC 2 cut(s) 263, 376
HpyCH4III ACNGT 3 cut(s) 126, 145, 331
HpyCH4V TGCA 6 cut(s) 26, 136, 157, 211, 217, 367
HpyF10VI GCNNNNNNNGC 3 cut(s) 223, 350, 359
HpyF3I CTNAG 2 cut(s) 264, 300
HspAI GCGC 1 cut(s) 417
LguI GCTCTTC 1 cut(s) 93
LpnPI CCDG 3 cut(s) 25, 163, 190
Lsp1109I GCAGC 4 cut(s) 120, 141, 160, 308
LweI GCATC 1 cut(s) 349
MaeI CTAG 1 cut(s) 414
MaeIII GTNAC 1 cut(s) 397
MboII GAAGA 5 cut(s) 28, 95, 110, 295, 316
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 1 cut(s) 8
MnlI CCTC 6 cut(s) 44, 88, 232, 237, 259, 328
MroXI GAANNNNTTC 1 cut(s) 308
MseI TTAA 1 cut(s) 427
MspA1I CMGCKG 1 cut(s) 356
MspR9I CCNGG 1 cut(s) 178
MvaI CCWGG 1 cut(s) 178
MwoI GCNNNNNNNGC 3 cut(s) 223, 350, 359
NspV TTCGAA 1 cut(s) 312
PciSI GCTCTTC 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 308
PfeI GAWTC 2 cut(s) 64, 338
PflFI GACNNNGTC 2 cut(s) 124, 143
PkrI GCNGC 5 cut(s) 135, 156, 175, 298, 355
Psp6I CCWGG 1 cut(s) 176
PspGI CCWGG 1 cut(s) 176
PstNI CAGNNNCTG 1 cut(s) 356
PsyI GACNNNGTC 2 cut(s) 124, 143
SapI GCTCTTC 1 cut(s) 93
SaqAI TTAA 1 cut(s) 427
SatI GCNGC 5 cut(s) 134, 155, 174, 297, 354
ScrFI CCNGG 1 cut(s) 178
SduI GDGCHC 1 cut(s) 369
SetI ASST 6 cut(s) 110, 175, 301, 346, 387, 426
SfaNI GCATC 1 cut(s) 349
SfcI CTRYAG 1 cut(s) 234
SfuI TTCGAA 1 cut(s) 312
Sse9I AATT 1 cut(s) 8
SsiI CCGC 1 cut(s) 354
SspMI CTAG 1 cut(s) 414
StyD4I CCNGG 1 cut(s) 176
TaaI ACNGT 3 cut(s) 126, 145, 331
TaqI TCGA 1 cut(s) 312
TasI AATT 1 cut(s) 8
TauI GCSGC 1 cut(s) 356
TfiI GAWTC 2 cut(s) 64, 338
Tru1I TTAA 1 cut(s) 427
Tru9I TTAA 1 cut(s) 427
TscAI CASTG 1 cut(s) 129
TseI GCWGC 4 cut(s) 133, 154, 173, 296
TspDTI ATGAA 3 cut(s) 34, 203, 302
TspRI CASTG 1 cut(s) 129
Tth111I GACNNNGTC 2 cut(s) 124, 143
VneI GTGCAC 1 cut(s) 365
XapI RAATTY 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 308
XspI CTAG 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.