Rh2DG292300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0011958
Physical Location & Seq
Forward (+)
34403727 .. 34404578
852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG292300.1

Sequence Viewer

Length: 438 bp
ATGGACAAATTTAGCAGAAGAACTGCACTTCTCCTCTTCTGGTTCATCATCGTCTCACTACAGATTCCGAAAACAATTGGAGAAGAAGGACAACAGAATGAGGAGCAGCAAACCTATTATACAAAGACACTGTCTGTGCTGCAAGACACAGTCTCTATGCTGCAAAAGTCTCATCAATCTGCCTGGGATAAGATGAAAACCGTCATATCAGATATGCAGATGCAGTTTATGCCTCCATCTTTAGAGGGGCAGGATAAAAAGGACGAAACTGAGGGTGAAGGCATGGGAGATAAGATGAAGGACGCAGCTCAGAAGAGCTTCGAAACAAGCAAACATACAGTAGAGGAATCAGCTAAATCAGCTGCTGATGCTGTGCACAAGACAGCAGAGAAGGTAAAGGAAGCTGTTACCAGTGATGAGTCTGCTGCAGAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.31

Weight (kDa)

5.01

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011958)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16850 AT5G64820
fragaria_vesca FvH4_1g22760 FvH4_1g22760
malus_domestica MD01G1020600.v1.1
prunus_persica Prupe.6G170400_v2.0.a1 Prupe.6G170400_v2.0.a1
pyrus_communis pycom01g05080
rosa_chinensis RchiOBHm_Chr2g0117081
rosa_laevigata RLG00000018327
rosa_multiflora Rmu_sc0027521.1_g000003
rosa_roxburghii Rroxscaffold_2G00126730
rosa_rugosa Rorug02G0210000 Rorug02G0210100
rosa_samantha Rh2AG266000 Rh2BG278000 Rh2DG273200 Rh2DG292300
rosa_wichuraiana Rw2G020990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 8
AjnI CCWGG 1 cut(s) 182
AluBI AGCT 6 cut(s) 308, 318, 353, 362, 404, 433
AluI AGCT 6 cut(s) 308, 318, 353, 362, 404, 433
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 3 cut(s) 58, 157, 174
Alw44I GTGCAC 1 cut(s) 374
AlwNI CAGNNNCTG 1 cut(s) 365
ApaLI GTGCAC 1 cut(s) 374
ApeKI GCWGC 6 cut(s) 106, 139, 160, 305, 362, 425
ApoI RAATTY 1 cut(s) 8
ArsI GACNNNNNNTTYG 2 cut(s) 116, 148
Asp700I GAANNNNTTC 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 287
AsuII TTCGAA 1 cut(s) 321
BaeGI GKGCMC 1 cut(s) 378
Bbv12I GWGCWC 1 cut(s) 378
BbvI GCAGC 6 cut(s) 118, 126, 147, 317, 349, 412
BccI CCATC 1 cut(s) 244
BciT130I CCWGG 1 cut(s) 184
BcoDI GTCTC 3 cut(s) 58, 157, 174
BfmI CTRYAG 2 cut(s) 59, 426
BisI GCNGC 6 cut(s) 107, 140, 161, 306, 363, 426
BlsI GCNGC 6 cut(s) 108, 141, 162, 307, 364, 427
Bme1390I CCNGG 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 184
BmsI GCATC 2 cut(s) 210, 358
Bpu14I TTCGAA 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 183
Bse1I ACTGG 1 cut(s) 411
BseBI CCWGG 1 cut(s) 184
BseDI CCNNGG 1 cut(s) 183
BseMII CTCAG 2 cut(s) 261, 323
BseNI ACTGG 1 cut(s) 411
BseRI GAGGAG 2 cut(s) 23, 116
BseSI GKGCMC 1 cut(s) 378
BseXI GCAGC 6 cut(s) 118, 126, 147, 317, 349, 412
BsgI GTGCAG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 378
BsmAI GTCTC 3 cut(s) 58, 157, 174
BsmBI CGTCTC 1 cut(s) 58
Bsp119I TTCGAA 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 378
BspCNI CTCAG 2 cut(s) 262, 322
BspMAI CTGCAG 1 cut(s) 430
BspQI GCTCTTC 1 cut(s) 308
BspT104I TTCGAA 1 cut(s) 321
BsrI ACTGG 1 cut(s) 411
BssECI CCNNGG 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 184
Bst4CI ACNGT 4 cut(s) 132, 151, 202, 340
Bst6I CTCTTC 2 cut(s) 41, 308
BstAPI GCANNNNNTGC 1 cut(s) 229
BstBI TTCGAA 1 cut(s) 321
BstDEI CTNAG 2 cut(s) 270, 309
BstMAI GTCTC 3 cut(s) 58, 157, 174
BstMWI GCNNNNNNNGC 3 cut(s) 229, 359, 368
BstNI CCWGG 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 182
BstSFI CTRYAG 2 cut(s) 59, 426
BstSLI GKGCMC 1 cut(s) 378
BstV1I GCAGC 6 cut(s) 118, 126, 147, 317, 349, 412
BtsIMutI CAGTG 2 cut(s) 128, 418
CaiI CAGNNNCTG 1 cut(s) 365
CseI GACGC 1 cut(s) 311
CviAII CATG 1 cut(s) 283
CviJI RGCY 6 cut(s) 308, 318, 353, 362, 404, 433
CviKI_1 RGCY 6 cut(s) 308, 318, 353, 362, 404, 433
DdeI CTNAG 2 cut(s) 270, 309
Eam1104I CTCTTC 2 cut(s) 41, 308
EarI CTCTTC 2 cut(s) 41, 308
EcoRII CCWGG 1 cut(s) 182
Esp3I CGTCTC 1 cut(s) 58
FaeI CATG 1 cut(s) 286
FaiI YATR 7 cut(s) 120, 158, 206, 215, 230, 284, 336
FatI CATG 1 cut(s) 282
Fnu4HI GCNGC 6 cut(s) 107, 140, 161, 306, 363, 426
Fsp4HI GCNGC 6 cut(s) 107, 140, 161, 306, 363, 426
GluI GCNGC 6 cut(s) 107, 140, 161, 306, 363, 426
HgaI GACGC 1 cut(s) 311
Hin1II CATG 1 cut(s) 286
HinfI GANTC 3 cut(s) 64, 347, 419
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 3 cut(s) 69, 211, 312
Hpy8I GTNNAC 1 cut(s) 376
HpyAV CCTTC 4 cut(s) 80, 272, 292, 385
HpyCH4III ACNGT 4 cut(s) 132, 151, 202, 340
HpyCH4V TGCA 7 cut(s) 26, 142, 163, 217, 223, 376, 428
HpyF10VI GCNNNNNNNGC 3 cut(s) 229, 359, 368
HpyF3I CTNAG 2 cut(s) 270, 309
Hsp92II CATG 1 cut(s) 286
LguI GCTCTTC 1 cut(s) 308
LmnI GCTCC 1 cut(s) 103
LpnPI CCDG 5 cut(s) 25, 169, 196, 236, 424
Lsp1109I GCAGC 6 cut(s) 118, 126, 147, 317, 349, 412
LweI GCATC 2 cut(s) 210, 358
MaeIII GTNAC 1 cut(s) 406
MboII GAAGA 4 cut(s) 28, 30, 95, 325
MfeI CAATTG 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 378
MluCI AATT 2 cut(s) 8, 75
MlyI GAGTC 1 cut(s) 428
MnlI CCTC 6 cut(s) 44, 94, 238, 243, 265, 337
MroXI GAANNNNTTC 1 cut(s) 317
MseI TTAA 1 cut(s) 436
MspA1I CMGCKG 1 cut(s) 362
MspR9I CCNGG 1 cut(s) 184
MunI CAATTG 1 cut(s) 75
MvaI CCWGG 1 cut(s) 184
MwoI GCNNNNNNNGC 3 cut(s) 229, 359, 368
NlaIII CATG 1 cut(s) 286
NspV TTCGAA 1 cut(s) 321
PciSI GCTCTTC 1 cut(s) 308
PdmI GAANNNNTTC 1 cut(s) 317
PfeI GAWTC 2 cut(s) 64, 347
PflFI GACNNNGTC 2 cut(s) 130, 149
PkrI GCNGC 6 cut(s) 108, 141, 162, 307, 364, 427
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
Psp6I CCWGG 1 cut(s) 182
PspGI CCWGG 1 cut(s) 182
PstI CTGCAG 1 cut(s) 430
PstNI CAGNNNCTG 1 cut(s) 365
PsyI GACNNNGTC 2 cut(s) 130, 149
PvuII CAGCTG 1 cut(s) 362
SapI GCTCTTC 1 cut(s) 308
SaqAI TTAA 1 cut(s) 436
SatI GCNGC 6 cut(s) 107, 140, 161, 306, 363, 426
SchI GAGTC 1 cut(s) 428
ScrFI CCNGG 1 cut(s) 184
SduI GDGCHC 1 cut(s) 378
SetI ASST 8 cut(s) 116, 310, 320, 355, 364, 396, 406, 435
SfaNI GCATC 2 cut(s) 210, 358
SfcI CTRYAG 2 cut(s) 59, 426
SfuI TTCGAA 1 cut(s) 321
SgeI CNNG 9 cut(s) 52, 155, 195, 196, 263, 295, 339, 391, 423
Sse9I AATT 2 cut(s) 8, 75
StyD4I CCNGG 1 cut(s) 182
TaaI ACNGT 4 cut(s) 132, 151, 202, 340
TaqI TCGA 1 cut(s) 321
TasI AATT 2 cut(s) 8, 75
TfiI GAWTC 2 cut(s) 64, 347
Tru1I TTAA 1 cut(s) 436
Tru9I TTAA 1 cut(s) 436
TscAI CASTG 2 cut(s) 135, 418
TseI GCWGC 6 cut(s) 106, 139, 160, 305, 362, 425
TspDTI ATGAA 3 cut(s) 34, 209, 311
TspRI CASTG 2 cut(s) 135, 418
Tth111I GACNNNGTC 2 cut(s) 130, 149
VneI GTGCAC 1 cut(s) 374
XapI RAATTY 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.