Rorug02G0210100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011958
Physical Location & Seq
Reverse (-)
19726969 .. 19730170
3202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0210100.1

Sequence Viewer

Length: 1299 bp
ATGAACAATCTGTTGGGACTTGAGCTTTCCATTTCCACAACCCACCACTCCATCTTCTTCAACACTTCAACCTCCTTTGACTTCTTCCCAACATTCAGTGAAATCCTTTCCCCAACTACCCTTATCCCTCCCATATCCTCTGCCCCTCTCACTTCCAACCACAAAAGAAACACAAGAGCAATTCAATGCTCCAAAACCCATGCTGCCCACTCAAGCCCCACTATCAGTCCTCATGTTGAAATGGAGGAGCAAGTAGAGGTTGAAGTTGCTGAAGGGTACACCATCACTCAATTTTGTGATAAGATAATTGATATTTTCTTGAATGAGAAGCCTAGGGTAAAGGAATGGAGGAGGTATCTGGTGTTTAGGGAGGAGTGGAATAAATATAGAGATTGCTTTTACAATAGGTGTAGGAATCGGGCCGATGCGGAGAGTGATGTAACTATGAAGGAAAAATTGGTTTCTATGGGAAGAAAGGTGAAGAAGATTGATGATGAAATGGAAAGACATAGTGAACTTCTCAAGGAGATACAGGATAACCCAACCGACGTCAATGCAATAGTTGCACGGAGGCGTAAAGACTTCACAGAGGAATTCTTTCGACACCTCAACCTACTTTCCGAAGTTTATGATGGTTTGGAAGATCGTGATGCAATGGCTCGGCTTGGGGCTAGATGCTTGTCTGCTGTCAGTGCTTATGATAACACATTAGAATATGTGGACACATTAGATACAGCCCAGGCCAAATTCGATGATATCCTAAATTCACCTTCAATCGATGTAGCTTGTGAGAAAATTAAAAGCCTTGCCAAGGCAAAGGAACTGGATTCTTCATTGGTATTATTGATAAACAGTGCTTGGGCTTCAGCAAAGGAGTCCACAACGATGAAAAATGAGGTCAAAGAAATAATGTATCGTTTGTACAAAGCCACAAAAAGCAGTCTTCGGAGCATTGTACCGAAAGAAATAAAGCTGCTCAAACATTTGCTGAACATAACAGATCCCGAAGAGCGATTCTCAGCACTGGCAACAGCTTTCTGCCCTGGTGATGATAATGAAGCCAAGGACCCCAAAGCTGTGTACAGTACTCCCAAAGAGCTTCACAAGTGGATTAAGATCATGCTCGATGCATACCATCTAAACGCAGAAGAAACTGACCTTAGGGAAGCCAGGCAGATGACTCAGCCTGTGGTTATACAAAGGCTGTTCATCCTCAAGGAAACTATTGAGGAGGAATATTTGGAAAAAAGCACATCTCCAGAGTCTCAAACAGAGGAAACTAAATCAGAGGAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

432

Amino Acids

49.76

Weight (kDa)

5.43

Isoelectric Point (pI)

45.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011958)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16850 AT5G64820
fragaria_vesca FvH4_1g22760 FvH4_1g22760
malus_domestica MD01G1020600.v1.1
prunus_persica Prupe.6G170400_v2.0.a1 Prupe.6G170400_v2.0.a1
pyrus_communis pycom01g05080
rosa_chinensis RchiOBHm_Chr2g0117081
rosa_laevigata RLG00000018327
rosa_multiflora Rmu_sc0027521.1_g000003
rosa_roxburghii Rroxscaffold_2G00126730
rosa_rugosa Rorug02G0210000 Rorug02G0210100
rosa_samantha Rh2AG266000 Rh2BG278000 Rh2DG273200 Rh2DG292300
rosa_wichuraiana Rw2G020990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 552
AciI CCGC 1 cut(s) 428
AclWI GGATC 1 cut(s) 995
AcsI RAATTY 3 cut(s) 593, 746, 763
AcuI CTGAAG 2 cut(s) 291, 849
AcyI GRCGYC 1 cut(s) 549
AfaI GTAC 5 cut(s) 278, 923, 957, 1082, 1087
AfiI CCNNNNNNNGG 1 cut(s) 811
AgsI TTSAA 7 cut(s) 61, 69, 185, 239, 263, 322, 774
AjnI CCWGG 3 cut(s) 738, 1042, 1169
AjuI GAANNNNNNNTTGG 3 cut(s) 28, 440, 472
AluBI AGCT 6 cut(s) 25, 785, 973, 1034, 1076, 1099
AluI AGCT 6 cut(s) 25, 785, 973, 1034, 1076, 1099
Alw26I GTCTC 1 cut(s) 1269
AlwI GGATC 1 cut(s) 995
AoxI GGCC 2 cut(s) 420, 741
ApeKI GCWGC 2 cut(s) 203, 973
ApoI RAATTY 3 cut(s) 593, 746, 763
Asp700I GAANNNNTTC 1 cut(s) 597
AspA2I CCTAGG 1 cut(s) 332
AspS9I GGNCC 2 cut(s) 420, 1066
AsuHPI GGTGA 3 cut(s) 490, 759, 1058
AvaII GGWCC 1 cut(s) 1066
AvrII CCTAGG 1 cut(s) 332
AxyI CCTNAGG 1 cut(s) 1160
BbsI GAAGAC 1 cut(s) 935
BbvI GCAGC 2 cut(s) 190, 960
BccI CCATC 4 cut(s) 59, 290, 626, 1143
BcgI CGANNNNNNTGC 2 cut(s) 536, 570
BciT130I CCWGG 3 cut(s) 740, 1044, 1171
BcoDI GTCTC 1 cut(s) 1269
BfaI CTAG 2 cut(s) 333, 672
BisI GCNGC 2 cut(s) 204, 974
BlnI CCTAGG 1 cut(s) 332
BlsI GCNGC 2 cut(s) 205, 975
BmcAI AGTACT 1 cut(s) 1087
Bme1390I CCNGG 3 cut(s) 740, 1044, 1171
Bme18I GGWCC 1 cut(s) 1066
BmgT120I GGNCC 2 cut(s) 420, 1066
BmiI GGNNCC 1 cut(s) 1068
BmrFI CCNGG 3 cut(s) 740, 1044, 1171
BmsI GCATC 4 cut(s) 415, 640, 665, 1117
BpiI GAAGAC 1 cut(s) 935
BplI GAGNNNNNCTC 2 cut(s) 1001, 1033
BpmI CTGGAG 1 cut(s) 1242
BpuEI CTTGAG 4 cut(s) 41, 196, 506, 1199
Bsa29I ATCGAT 1 cut(s) 777
BsaBI GATNNNNATC 1 cut(s) 1115
BsaHI GRCGYC 1 cut(s) 549
BsaJI CCNNGG 5 cut(s) 332, 738, 810, 1042, 1062
Bsc4I CCNNNNNNNGG 1 cut(s) 811
Bse1I ACTGG 2 cut(s) 828, 1029
Bse21I CCTNAGG 1 cut(s) 1160
Bse3DI GCAATG 1 cut(s) 660
Bse8I GATNNNNATC 1 cut(s) 1115
BseBI CCWGG 3 cut(s) 740, 1044, 1171
BseCI ATCGAT 1 cut(s) 777
BseDI CCNNGG 5 cut(s) 332, 738, 810, 1042, 1062
BseGI GGATG 1 cut(s) 1209
BseJI GATNNNNATC 1 cut(s) 1115
BseLI CCNNNNNNNGG 1 cut(s) 811
BseMI GCAATG 1 cut(s) 660
BseMII CTCAG 2 cut(s) 1032, 1196
BseNI ACTGG 2 cut(s) 828, 1029
BseRI GAGGAG 4 cut(s) 260, 364, 386, 1244
BseXI GCAGC 2 cut(s) 190, 960
BshFI GGCC 2 cut(s) 422, 743
BshVI ATCGAT 1 cut(s) 777
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 811
BsmAI GTCTC 1 cut(s) 1269
BsmFI GGGAC 1 cut(s) 30
BsnI GGCC 2 cut(s) 422, 743
Bsp1407I TGTACA 2 cut(s) 921, 1080
Bsp143I GATC 3 cut(s) 643, 1000, 1116
BspACI CCGC 1 cut(s) 428
BspANI GGCC 2 cut(s) 422, 743
BspCNI CTCAG 2 cut(s) 1031, 1195
BspDI ATCGAT 1 cut(s) 777
BspLI GGNNCC 1 cut(s) 1068
BspPI GGATC 1 cut(s) 995
BspQI GCTCTTC 1 cut(s) 1002
BsrDI GCAATG 1 cut(s) 660
BsrGI TGTACA 2 cut(s) 921, 1080
BsrI ACTGG 2 cut(s) 828, 1029
BssECI CCNNGG 5 cut(s) 332, 738, 810, 1042, 1062
BssMI GATC 3 cut(s) 643, 1000, 1116
BssNI GRCGYC 1 cut(s) 549
BssT1I CCWWGG 3 cut(s) 332, 810, 1062
Bst2UI CCWGG 3 cut(s) 740, 1044, 1171
Bst4CI ACNGT 2 cut(s) 854, 1085
Bst6I CTCTTC 1 cut(s) 1002
BstACI GRCGYC 1 cut(s) 549
BstAPI GCANNNNNTGC 1 cut(s) 563
BstAUI TGTACA 2 cut(s) 921, 1080
BstDEI CTNAG 3 cut(s) 1018, 1160, 1182
BstENI CCTNNNNNAGG 1 cut(s) 809
BstF5I GGATG 1 cut(s) 1209
BstKTI GATC 3 cut(s) 646, 1003, 1119
BstMAI GTCTC 1 cut(s) 1269
BstMBI GATC 3 cut(s) 643, 1000, 1116
BstMWI GCNNNNNNNGC 2 cut(s) 563, 692
BstNI CCWGG 3 cut(s) 740, 1044, 1171
BstSCI CCNGG 3 cut(s) 738, 1042, 1169
BstV1I GCAGC 2 cut(s) 190, 960
BstV2I GAAGAC 1 cut(s) 935
BstX2I RGATCY 1 cut(s) 1000
BstYI RGATCY 1 cut(s) 1000
Bsu15I ATCGAT 1 cut(s) 777
Bsu36I CCTNAGG 1 cut(s) 1160
BsuRI GGCC 2 cut(s) 422, 743
BsuTUI ATCGAT 1 cut(s) 777
BtsCI GGATG 1 cut(s) 1209
BtsIMutI CAGTG 4 cut(s) 103, 697, 859, 1022
Cfr13I GGNCC 2 cut(s) 420, 1066
ClaI ATCGAT 1 cut(s) 777
Csp6I GTAC 5 cut(s) 277, 922, 956, 1081, 1086
CviAII CATG 3 cut(s) 200, 233, 1120
CviQI GTAC 5 cut(s) 277, 922, 956, 1081, 1086
DdeI CTNAG 3 cut(s) 1018, 1160, 1182
DpnI GATC 3 cut(s) 645, 1002, 1118
DpnII GATC 3 cut(s) 643, 1000, 1116
Eam1104I CTCTTC 1 cut(s) 1002
EarI CTCTTC 1 cut(s) 1002
Eco130I CCWWGG 3 cut(s) 332, 810, 1062
Eco32I GATATC 1 cut(s) 757
Eco47I GGWCC 1 cut(s) 1066
Eco57I CTGAAG 2 cut(s) 291, 849
Eco81I CCTNAGG 1 cut(s) 1160
EcoNI CCTNNNNNAGG 1 cut(s) 809
EcoO109I RGGNCCY 1 cut(s) 1066
EcoRI GAATTC 1 cut(s) 593
EcoRII CCWGG 3 cut(s) 738, 1042, 1169
EcoRV GATATC 1 cut(s) 757
EcoT14I CCWWGG 3 cut(s) 332, 810, 1062
EcoT22I ATGCAT 1 cut(s) 1132
ErhI CCWWGG 3 cut(s) 332, 810, 1062
FaeI CATG 3 cut(s) 203, 236, 1123
FaqI GGGAC 1 cut(s) 30
FatI CATG 3 cut(s) 199, 232, 1119
Fnu4HI GCNGC 2 cut(s) 204, 974
FokI GGATG 1 cut(s) 1196
Fsp4HI GCNGC 2 cut(s) 204, 974
FspBI CTAG 2 cut(s) 333, 672
GluI GCNGC 2 cut(s) 204, 974
GsuI CTGGAG 1 cut(s) 1242
HaeIII GGCC 2 cut(s) 422, 743
Hin1I GRCGYC 1 cut(s) 549
Hin1II CATG 3 cut(s) 203, 236, 1123
HinfI GANTC 6 cut(s) 415, 827, 875, 1014, 1180, 1262
HphI GGTGA 3 cut(s) 490, 759, 1058
Hpy166II GTNNAC 5 cut(s) 279, 515, 721, 879, 1081
Hpy188I TCNGA 4 cut(s) 622, 948, 1288, 1298
Hpy188III TCNNGA 4 cut(s) 319, 647, 1004, 1259
Hpy8I GTNNAC 5 cut(s) 279, 515, 721, 879, 1081
Hpy99I CGWCG 1 cut(s) 551
HpyAV CCTTC 3 cut(s) 266, 442, 780
HpyCH4III ACNGT 2 cut(s) 854, 1085
HpyCH4IV ACGT 1 cut(s) 549
HpyCH4V TGCA 4 cut(s) 557, 566, 653, 1130
HpyF10VI GCNNNNNNNGC 2 cut(s) 563, 692
HpyF3I CTNAG 3 cut(s) 1018, 1160, 1182
HpySE526I ACGT 1 cut(s) 549
Hsp92I GRCGYC 1 cut(s) 549
Hsp92II CATG 3 cut(s) 203, 236, 1123
Kzo9I GATC 3 cut(s) 643, 1000, 1116
LguI GCTCTTC 1 cut(s) 1002
LmnI GCTCC 3 cut(s) 194, 247, 948
Lsp1109I GCAGC 2 cut(s) 190, 960
LweI GCATC 4 cut(s) 415, 640, 665, 1117
MaeI CTAG 2 cut(s) 333, 672
MaeII ACGT 1 cut(s) 549
MaeIII GTNAC 1 cut(s) 439
MalI GATC 3 cut(s) 645, 1002, 1118
MboI GATC 3 cut(s) 643, 1000, 1116
MflI RGATCY 1 cut(s) 1000
MluCI AATT 8 cut(s) 180, 290, 306, 455, 593, 746, 763, 795
MlyI GAGTC 3 cut(s) 884, 1174, 1271
MmeI TCCRAC 1 cut(s) 180
Mph1103I ATGCAT 1 cut(s) 1132
MroXI GAANNNNTTC 1 cut(s) 597
MseI TTAA 2 cut(s) 798, 1113
MslI CAYNNNNRTG 1 cut(s) 884
MspR9I CCNGG 3 cut(s) 740, 1044, 1171
MvaI CCWGG 3 cut(s) 740, 1044, 1171
MwoI GCNNNNNNNGC 2 cut(s) 563, 692
NdeII GATC 3 cut(s) 643, 1000, 1116
NlaIII CATG 3 cut(s) 203, 236, 1123
NlaIV GGNNCC 1 cut(s) 1068
NmeAIII GCCGAG 1 cut(s) 640
NsiI ATGCAT 1 cut(s) 1132
PciSI GCTCTTC 1 cut(s) 1002
PdmI GAANNNNTTC 1 cut(s) 597
PfeI GAWTC 3 cut(s) 415, 827, 1014
PkrI GCNGC 2 cut(s) 205, 975
PleI GAGTC 3 cut(s) 883, 1174, 1270
PpsI GAGTC 3 cut(s) 883, 1174, 1270
PpuMI RGGWCCY 1 cut(s) 1066
Psp5II RGGWCCY 1 cut(s) 1066
Psp6I CCWGG 3 cut(s) 738, 1042, 1169
PspGI CCWGG 3 cut(s) 738, 1042, 1169
PspN4I GGNNCC 1 cut(s) 1068
PspPI GGNCC 2 cut(s) 420, 1066
PspPPI RGGWCCY 1 cut(s) 1066
PsuI RGATCY 1 cut(s) 1000
RsaI GTAC 5 cut(s) 278, 923, 957, 1082, 1087
RsaNI GTAC 5 cut(s) 277, 922, 956, 1081, 1086
RseI CAYNNNNRTG 1 cut(s) 884
SapI GCTCTTC 1 cut(s) 1002
SaqAI TTAA 2 cut(s) 798, 1113
SatI GCNGC 2 cut(s) 204, 974
Sau3AI GATC 3 cut(s) 643, 1000, 1116
Sau96I GGNCC 2 cut(s) 420, 1066
ScaI AGTACT 1 cut(s) 1087
SchI GAGTC 3 cut(s) 884, 1174, 1271
ScrFI CCNGG 3 cut(s) 740, 1044, 1171
SfaNI GCATC 4 cut(s) 415, 640, 665, 1117
SinI GGWCC 1 cut(s) 1066
SmiMI CAYNNNNRTG 1 cut(s) 884
SmlI CTYRAG 4 cut(s) 20, 211, 521, 1214
SmoI CTYRAG 4 cut(s) 20, 211, 521, 1214
Sse9I AATT 8 cut(s) 180, 290, 306, 455, 593, 746, 763, 795
SsiI CCGC 1 cut(s) 428
SspI AATATT 1 cut(s) 1238
SspMI CTAG 2 cut(s) 333, 672
StyD4I CCNGG 3 cut(s) 738, 1042, 1169
StyI CCWWGG 3 cut(s) 332, 810, 1062
TaaI ACNGT 2 cut(s) 854, 1085
TaiI ACGT 1 cut(s) 552
TaqI TCGA 4 cut(s) 601, 750, 777, 1125
TasI AATT 8 cut(s) 180, 290, 306, 455, 593, 746, 763, 795
TatI WGTACW 3 cut(s) 921, 1080, 1085
TfiI GAWTC 3 cut(s) 415, 827, 1014
Tru1I TTAA 2 cut(s) 798, 1113
Tru9I TTAA 2 cut(s) 798, 1113
TscAI CASTG 4 cut(s) 103, 697, 859, 1029
TseI GCWGC 2 cut(s) 203, 973
TspDTI ATGAA 7 cut(s) 17, 461, 510, 822, 902, 1071, 1198
TspGWI ACGGA 1 cut(s) 583
TspRI CASTG 4 cut(s) 103, 697, 859, 1029
VpaK11BI GGWCC 1 cut(s) 1066
XagI CCTNNNNNAGG 1 cut(s) 809
XapI RAATTY 3 cut(s) 593, 746, 763
XmaJI CCTAGG 1 cut(s) 332
XmnI GAANNNNTTC 1 cut(s) 597
XspI CTAG 2 cut(s) 333, 672
ZraI GACGTC 1 cut(s) 550
ZrmI AGTACT 1 cut(s) 1087
Zsp2I ATGCAT 1 cut(s) 1132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.