Rorug02G0210000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011958
Physical Location & Seq
Reverse (-)
19725312 .. 19725911
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0210000.1

Sequence Viewer

Length: 600 bp
ATGGCTGATGAGGATAGAAATCTAGTGGAAATTTTGGAGGAGCACACTGTAATTGACATTGCGAAATATATCAATTATGTAAGTGCTCCAGAGGCAGGTGCTATTGCAACGTTTTCTGGTACCACGCGCGACACCTTTGATGGAAAAGCAGTCTTGGAGTTGAGATATGAAGCATATGTTCCCATGGCAATACGATGCATGAAATCCATTTGTTCATCTGCTAGATCCTCCTGGAATCTTGTCTCCATTGCAGTTGCCCACCGCCTTGGCCCGGTTCCTGTTGGTAAAACGAGTGTTTTCATTGCAGTCTCATCTGTTCATCGAGTTGATTCATTAGATGCTTGTAAGTTTATAATTGATGAGATAAAGGCGTCAGTTCCAATATGGAAGAAGGAGGTCTATAGTAATGGAGAGGTTTGGAAGGAGAACTCAGAGTTCTTGGAGAGGAGGTTGGATCTCGGGAAAAAAGAAGGCATATGTAATGAGAAAGACTCTGAAGCACAAAGACATATTAGGAAGAGCTGCTGTGGTGCTAAGGTAAAGGTTGTAGAAGAAGGAGATTCTGTAATTAGCAAACATGAAGCTCACCAAGATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.14

Weight (kDa)

5.9

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MoaE PF02391 15 - 124 2.5e-37 MoaE protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011958)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16850 AT5G64820
fragaria_vesca FvH4_1g22760 FvH4_1g22760
malus_domestica MD01G1020600.v1.1
prunus_persica Prupe.6G170400_v2.0.a1 Prupe.6G170400_v2.0.a1
pyrus_communis pycom01g05080
rosa_chinensis RchiOBHm_Chr2g0117081
rosa_laevigata RLG00000018327
rosa_multiflora Rmu_sc0027521.1_g000003
rosa_roxburghii Rroxscaffold_2G00126730
rosa_rugosa Rorug02G0210000 Rorug02G0210100
rosa_samantha Rh2AG266000 Rh2BG278000 Rh2DG273200 Rh2DG292300
rosa_wichuraiana Rw2G020990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 353
AarI CACCTGC 1 cut(s) 86
Acc36I ACCTGC 1 cut(s) 86
Acc65I GGTACC 1 cut(s) 119
AccB1I GGYRCC 1 cut(s) 119
AccII CGCG 2 cut(s) 127, 129
AciI CCGC 1 cut(s) 262
AclI AACGTT 1 cut(s) 110
AclWI GGATC 2 cut(s) 219, 462
AcsI RAATTY 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 516
AcyI GRCGYC 1 cut(s) 371
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 2 cut(s) 95, 271
AjnI CCWGG 1 cut(s) 230
AluBI AGCT 2 cut(s) 522, 584
AluI AGCT 2 cut(s) 522, 584
Alw21I GWGCWC 2 cut(s) 45, 88
Alw26I GTCTC 2 cut(s) 247, 313
AlwI GGATC 2 cut(s) 219, 462
Ama87I CYCGRG 1 cut(s) 458
AoxI GGCC 1 cut(s) 268
ApeKI GCWGC 1 cut(s) 522
ApoI RAATTY 1 cut(s) 30
Asp718I GGTACC 1 cut(s) 119
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 269
AsuC2I CCSGG 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 578
AvaI CYCGRG 1 cut(s) 458
BanI GGYRCC 1 cut(s) 119
Bbv12I GWGCWC 2 cut(s) 45, 88
BbvI GCAGC 1 cut(s) 509
BccI CCATC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 232
BcnI CCSGG 1 cut(s) 272
BcoDI GTCTC 2 cut(s) 247, 313
BfaI CTAG 2 cut(s) 23, 222
BfmI CTRYAG 1 cut(s) 400
BfuAI ACCTGC 1 cut(s) 86
BisI GCNGC 1 cut(s) 523
BlsI GCNGC 1 cut(s) 524
Bme1390I CCNGG 2 cut(s) 232, 272
BmeT110I CYCGRG 1 cut(s) 458
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 2 cut(s) 121, 276
BmrFI CCNGG 2 cut(s) 232, 272
BmsI GCATC 2 cut(s) 185, 328
BplI GAGNNNNNCTC 2 cut(s) 476, 508
BpmI CTGGAG 1 cut(s) 72
Bpu10I CCTNAGC 1 cut(s) 534
BpuMI CCSGG 1 cut(s) 272
BsaBI GATNNNNATC 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 371
BsaJI CCNNGG 2 cut(s) 183, 265
BsaXI ACNNNNNCTCC 4 cut(s) 434, 464, 549, 579
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 271
Bse3DI GCAATG 3 cut(s) 57, 246, 300
Bse8I GATNNNNATC 1 cut(s) 18
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 2 cut(s) 183, 265
BseJI GATNNNNATC 1 cut(s) 18
BseLI CCNNNNNNNGG 2 cut(s) 95, 271
BseMI GCAATG 3 cut(s) 57, 246, 300
BseMII CTCAG 1 cut(s) 444
BseRI GAGGAG 2 cut(s) 53, 460
BseXI GCAGC 1 cut(s) 509
Bsh1236I CGCG 2 cut(s) 127, 129
BshFI GGCC 1 cut(s) 270
BshNI GGYRCC 1 cut(s) 119
BsiHKAI GWGCWC 2 cut(s) 45, 88
BsiHKCI CYCGRG 1 cut(s) 458
BsiSI CCGG 1 cut(s) 272
BslI CCNNNNNNNGG 2 cut(s) 95, 271
BsmAI GTCTC 2 cut(s) 247, 313
BsnI GGCC 1 cut(s) 270
BsoBI CYCGRG 1 cut(s) 458
Bsp1286I GDGCHC 2 cut(s) 45, 88
Bsp143I GATC 2 cut(s) 224, 454
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 1 cut(s) 262
BspANI GGCC 1 cut(s) 270
BspCNI CTCAG 1 cut(s) 443
BspFNI CGCG 2 cut(s) 127, 129
BspLI GGNNCC 2 cut(s) 121, 276
BspMI ACCTGC 1 cut(s) 86
BspPI GGATC 2 cut(s) 219, 462
BspQI GCTCTTC 1 cut(s) 512
BspT107I GGYRCC 1 cut(s) 119
BsrDI GCAATG 3 cut(s) 57, 246, 300
BssECI CCNNGG 2 cut(s) 183, 265
BssMI GATC 2 cut(s) 224, 454
BssNI GRCGYC 1 cut(s) 371
BssT1I CCWWGG 2 cut(s) 183, 265
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 512
BstACI GRCGYC 1 cut(s) 371
BstDEI CTNAG 2 cut(s) 430, 534
BstDSI CCRYGG 1 cut(s) 183
BstFNI CGCG 2 cut(s) 127, 129
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 2 cut(s) 227, 457
BstMAI GTCTC 2 cut(s) 247, 313
BstMBI GATC 2 cut(s) 224, 454
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 232
BstSCI CCNGG 2 cut(s) 230, 270
BstSFI CTRYAG 1 cut(s) 400
BstUI CGCG 2 cut(s) 127, 129
BstV1I GCAGC 1 cut(s) 509
BstX2I RGATCY 2 cut(s) 224, 454
BstXI CCANNNNNNTGG 1 cut(s) 266
BstYI RGATCY 2 cut(s) 224, 454
BsuRI GGCC 1 cut(s) 270
BtgI CCRYGG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 45
BveI ACCTGC 1 cut(s) 86
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 269
CseI GACGC 1 cut(s) 360
Csp6I GTAC 1 cut(s) 120
CviAII CATG 3 cut(s) 184, 199, 578
CviJI RGCY 4 cut(s) 5, 270, 522, 584
CviKI_1 RGCY 4 cut(s) 5, 270, 522, 584
CviQI GTAC 1 cut(s) 120
DdeI CTNAG 2 cut(s) 430, 534
DpnI GATC 2 cut(s) 226, 456
DpnII GATC 2 cut(s) 224, 454
Eam1104I CTCTTC 1 cut(s) 512
EarI CTCTTC 1 cut(s) 512
Eco130I CCWWGG 2 cut(s) 183, 265
Eco57I CTGAAG 1 cut(s) 516
Eco88I CYCGRG 1 cut(s) 458
EcoRII CCWGG 1 cut(s) 230
EcoT14I CCWWGG 2 cut(s) 183, 265
EcoT22I ATGCAT 1 cut(s) 200
ErhI CCWWGG 2 cut(s) 183, 265
FaeI CATG 3 cut(s) 187, 202, 581
FatI CATG 3 cut(s) 183, 198, 577
FauNDI CATATG 2 cut(s) 175, 476
Fnu4HI GCNGC 1 cut(s) 523
Fsp4HI GCNGC 1 cut(s) 523
FspBI CTAG 2 cut(s) 23, 222
GlaI GCGC 1 cut(s) 128
GluI GCNGC 1 cut(s) 523
GsuI CTGGAG 1 cut(s) 72
HaeIII GGCC 1 cut(s) 270
HapII CCGG 1 cut(s) 272
HgaI GACGC 1 cut(s) 360
HhaI GCGC 1 cut(s) 129
Hin1I GRCGYC 1 cut(s) 371
Hin1II CATG 3 cut(s) 187, 202, 581
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HinfI GANTC 4 cut(s) 235, 329, 491, 560
HpaII CCGG 1 cut(s) 272
HphI GGTGA 1 cut(s) 578
Hpy188I TCNGA 2 cut(s) 433, 496
Hpy188III TCNNGA 2 cut(s) 89, 460
HpyAV CCTTC 4 cut(s) 385, 415, 464, 548
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 4 cut(s) 107, 198, 251, 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 430, 534
HpySE526I ACGT 1 cut(s) 110
Hsp92I GRCGYC 1 cut(s) 371
Hsp92II CATG 3 cut(s) 187, 202, 581
HspAI GCGC 1 cut(s) 127
KpnI GGTACC 1 cut(s) 123
Kzo9I GATC 2 cut(s) 224, 454
LguI GCTCTTC 1 cut(s) 512
LmnI GCTCC 2 cut(s) 40, 91
LpnPI CCDG 7 cut(s) 81, 102, 102, 217, 244, 285, 291
Lsp1109I GCAGC 1 cut(s) 509
LweI GCATC 2 cut(s) 185, 328
MaeI CTAG 2 cut(s) 23, 222
MaeII ACGT 1 cut(s) 110
MalI GATC 2 cut(s) 226, 456
MboI GATC 2 cut(s) 224, 454
MboII GAAGA 3 cut(s) 400, 529, 563
MflI RGATCY 2 cut(s) 224, 454
MhlI GDGCHC 2 cut(s) 45, 88
MluCI AATT 5 cut(s) 30, 51, 73, 354, 567
MlyI GAGTC 1 cut(s) 485
MmeI TCCRAC 1 cut(s) 432
MnlI CCTC 8 cut(s) 4, 31, 85, 238, 388, 406, 438, 441
Mph1103I ATGCAT 1 cut(s) 200
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 2 cut(s) 232, 272
MvaI CCWGG 1 cut(s) 232
MvnI CGCG 2 cut(s) 127, 129
MwoI GCNNNNNNNGC 1 cut(s) 92
NciI CCSGG 1 cut(s) 272
NcoI CCATGG 1 cut(s) 183
NdeI CATATG 2 cut(s) 175, 476
NdeII GATC 2 cut(s) 224, 454
NlaIII CATG 3 cut(s) 187, 202, 581
NlaIV GGNNCC 2 cut(s) 121, 276
NsiI ATGCAT 1 cut(s) 200
PaqCI CACCTGC 1 cut(s) 86
PciSI GCTCTTC 1 cut(s) 512
PfeI GAWTC 3 cut(s) 235, 329, 560
PfoI TCCNGGA 1 cut(s) 230
PkrI GCNGC 1 cut(s) 524
PleI GAGTC 1 cut(s) 485
PpsI GAGTC 1 cut(s) 485
PsiI TTATAA 1 cut(s) 353
Psp1406I AACGTT 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 2 cut(s) 121, 276
PspPI GGNCC 1 cut(s) 269
PsuI RGATCY 2 cut(s) 224, 454
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
SapI GCTCTTC 1 cut(s) 512
SatI GCNGC 1 cut(s) 523
Sau3AI GATC 2 cut(s) 224, 454
Sau96I GGNCC 1 cut(s) 269
SchI GAGTC 1 cut(s) 485
ScrFI CCNGG 2 cut(s) 232, 272
SduI GDGCHC 2 cut(s) 45, 88
SfaNI GCATC 2 cut(s) 185, 328
SfcI CTRYAG 1 cut(s) 400
Sse9I AATT 5 cut(s) 30, 51, 73, 354, 567
SsiI CCGC 1 cut(s) 262
SspMI CTAG 2 cut(s) 23, 222
StyD4I CCNGG 2 cut(s) 230, 270
StyI CCWWGG 2 cut(s) 183, 265
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 1 cut(s) 113
TaqI TCGA 1 cut(s) 322
TasI AATT 5 cut(s) 30, 51, 73, 354, 567
TfiI GAWTC 3 cut(s) 235, 329, 560
TscAI CASTG 1 cut(s) 52
TseI GCWGC 1 cut(s) 522
TspDTI ATGAA 7 cut(s) 183, 204, 215, 289, 308, 321, 594
TspRI CASTG 1 cut(s) 52
XapI RAATTY 1 cut(s) 30
XspI CTAG 2 cut(s) 23, 222
Zsp2I ATGCAT 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.