RLG00000018327

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011958
Physical Location & Seq
Forward (+)
28375703 .. 28376476
774 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018327

Sequence Viewer

Length: 435 bp
ATGGACAAATTTAGCAGAAGAACTGCACTTCTCCTCTTCTGGTTCATCATCGTCTCACTACAGATTCCAAAAACAATTGGAGAAGGACAACAGAATGAGGAGCAGCAAACCTATTATACAAAGACACTGTCTGTGCTGCAGGACACAGTCTCTATGCTGCAAAAGTCTCATCAATCTGCCTGGGATAAGATGAAAACCGTCATATCAGATATGCAGATGCAGTTTATGCCTCCATCTTTAGAGGGGCAGGATAAAAAGGATGAAACTGAGGGTGAAGGCGTGGGAGATAAGATGAAAGACGCAGCTCAGAAGAGCTTCGAAACAAGCAAACATACAGTAGAGGAATCAGCTAAATCAGCTGCTGATGCTGTGCACAGGACAGCAGAGAAGGTAAAGGAAGCTGTTGCCAGTGATGAGTCTGCGGCAGAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.15

Weight (kDa)

5.11

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011958)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16850 AT5G64820
fragaria_vesca FvH4_1g22760 FvH4_1g22760
malus_domestica MD01G1020600.v1.1
prunus_persica Prupe.6G170400_v2.0.a1 Prupe.6G170400_v2.0.a1
pyrus_communis pycom01g05080
rosa_chinensis RchiOBHm_Chr2g0117081
rosa_laevigata RLG00000018327
rosa_multiflora Rmu_sc0027521.1_g000003
rosa_roxburghii Rroxscaffold_2G00126730
rosa_rugosa Rorug02G0210000 Rorug02G0210100
rosa_samantha Rh2AG266000 Rh2BG278000 Rh2DG273200 Rh2DG292300
rosa_wichuraiana Rw2G020990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 422
AcsI RAATTY 1 cut(s) 8
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 6 cut(s) 305, 315, 350, 359, 401, 430
AluI AGCT 6 cut(s) 305, 315, 350, 359, 401, 430
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 3 cut(s) 58, 154, 171
Alw44I GTGCAC 1 cut(s) 371
AlwNI CAGNNNCTG 1 cut(s) 362
ApaLI GTGCAC 1 cut(s) 371
ApeKI GCWGC 5 cut(s) 103, 136, 157, 302, 359
ApoI RAATTY 1 cut(s) 8
ArsI GACNNNNNNTTYG 2 cut(s) 113, 145
Asp700I GAANNNNTTC 1 cut(s) 314
AsuHPI GGTGA 1 cut(s) 284
AsuII TTCGAA 1 cut(s) 318
BaeGI GKGCMC 1 cut(s) 375
Bbv12I GWGCWC 1 cut(s) 375
BbvI GCAGC 5 cut(s) 115, 123, 144, 314, 346
BccI CCATC 1 cut(s) 241
BciT130I CCWGG 1 cut(s) 181
BcoDI GTCTC 3 cut(s) 58, 154, 171
BfmI CTRYAG 2 cut(s) 59, 137
BisI GCNGC 6 cut(s) 104, 137, 158, 303, 360, 423
BlsI GCNGC 6 cut(s) 105, 138, 159, 304, 361, 424
Bme1390I CCNGG 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 181
BmsI GCATC 2 cut(s) 207, 355
Bpu14I TTCGAA 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 408
BseBI CCWGG 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 1 cut(s) 265
BseMII CTCAG 2 cut(s) 258, 320
BseNI ACTGG 1 cut(s) 408
BseRI GAGGAG 2 cut(s) 23, 113
BseSI GKGCMC 1 cut(s) 375
BseXI GCAGC 5 cut(s) 115, 123, 144, 314, 346
BsgI GTGCAG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 375
BsmAI GTCTC 3 cut(s) 58, 154, 171
BsmBI CGTCTC 1 cut(s) 58
Bsp119I TTCGAA 1 cut(s) 318
Bsp1286I GDGCHC 1 cut(s) 375
BspACI CCGC 1 cut(s) 422
BspCNI CTCAG 2 cut(s) 259, 319
BspMAI CTGCAG 1 cut(s) 141
BspQI GCTCTTC 1 cut(s) 305
BspT104I TTCGAA 1 cut(s) 318
BsrI ACTGG 1 cut(s) 408
BssECI CCNNGG 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 181
Bst4CI ACNGT 4 cut(s) 129, 148, 199, 337
Bst6I CTCTTC 2 cut(s) 41, 305
BstAPI GCANNNNNTGC 1 cut(s) 226
BstBI TTCGAA 1 cut(s) 318
BstDEI CTNAG 2 cut(s) 267, 306
BstF5I GGATG 1 cut(s) 265
BstMAI GTCTC 3 cut(s) 58, 154, 171
BstMWI GCNNNNNNNGC 3 cut(s) 226, 356, 365
BstNI CCWGG 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 179
BstSFI CTRYAG 2 cut(s) 59, 137
BstSLI GKGCMC 1 cut(s) 375
BstV1I GCAGC 5 cut(s) 115, 123, 144, 314, 346
BtsCI GGATG 1 cut(s) 265
BtsIMutI CAGTG 2 cut(s) 125, 415
CaiI CAGNNNCTG 1 cut(s) 362
CseI GACGC 1 cut(s) 308
CviJI RGCY 6 cut(s) 305, 315, 350, 359, 401, 430
CviKI_1 RGCY 6 cut(s) 305, 315, 350, 359, 401, 430
DdeI CTNAG 2 cut(s) 267, 306
Eam1104I CTCTTC 2 cut(s) 41, 305
EarI CTCTTC 2 cut(s) 41, 305
EcoRII CCWGG 1 cut(s) 179
Esp3I CGTCTC 1 cut(s) 58
FaiI YATR 6 cut(s) 117, 155, 203, 212, 227, 333
Fnu4HI GCNGC 6 cut(s) 104, 137, 158, 303, 360, 423
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 6 cut(s) 104, 137, 158, 303, 360, 423
GluI GCNGC 6 cut(s) 104, 137, 158, 303, 360, 423
HgaI GACGC 1 cut(s) 308
HinfI GANTC 3 cut(s) 64, 344, 416
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 2 cut(s) 208, 309
Hpy8I GTNNAC 1 cut(s) 373
HpyAV CCTTC 3 cut(s) 77, 269, 382
HpyCH4III ACNGT 4 cut(s) 129, 148, 199, 337
HpyCH4V TGCA 6 cut(s) 26, 139, 160, 214, 220, 373
HpyF10VI GCNNNNNNNGC 3 cut(s) 226, 356, 365
HpyF3I CTNAG 2 cut(s) 267, 306
LguI GCTCTTC 1 cut(s) 305
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 7 cut(s) 25, 125, 166, 193, 233, 361, 421
Lsp1109I GCAGC 5 cut(s) 115, 123, 144, 314, 346
LweI GCATC 2 cut(s) 207, 355
MboII GAAGA 3 cut(s) 28, 30, 322
MfeI CAATTG 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 2 cut(s) 8, 75
MlyI GAGTC 1 cut(s) 425
MnlI CCTC 6 cut(s) 44, 91, 235, 240, 262, 334
MroXI GAANNNNTTC 1 cut(s) 314
MseI TTAA 1 cut(s) 433
MspA1I CMGCKG 1 cut(s) 359
MspR9I CCNGG 1 cut(s) 181
MunI CAATTG 1 cut(s) 75
MvaI CCWGG 1 cut(s) 181
MwoI GCNNNNNNNGC 3 cut(s) 226, 356, 365
NspV TTCGAA 1 cut(s) 318
PciSI GCTCTTC 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 314
PfeI GAWTC 2 cut(s) 64, 344
PflFI GACNNNGTC 2 cut(s) 127, 146
PkrI GCNGC 6 cut(s) 105, 138, 159, 304, 361, 424
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
Psp6I CCWGG 1 cut(s) 179
PspGI CCWGG 1 cut(s) 179
PstI CTGCAG 1 cut(s) 141
PstNI CAGNNNCTG 1 cut(s) 362
PsyI GACNNNGTC 2 cut(s) 127, 146
PvuII CAGCTG 1 cut(s) 359
SapI GCTCTTC 1 cut(s) 305
SaqAI TTAA 1 cut(s) 433
SatI GCNGC 6 cut(s) 104, 137, 158, 303, 360, 423
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 181
SduI GDGCHC 1 cut(s) 375
SetI ASST 8 cut(s) 113, 307, 317, 352, 361, 393, 403, 432
SfaNI GCATC 2 cut(s) 207, 355
SfcI CTRYAG 2 cut(s) 59, 137
SfuI TTCGAA 1 cut(s) 318
SgeI CNNG 9 cut(s) 52, 152, 192, 193, 260, 292, 336, 388, 420
Sse9I AATT 2 cut(s) 8, 75
SsiI CCGC 1 cut(s) 422
StyD4I CCNGG 1 cut(s) 179
TaaI ACNGT 4 cut(s) 129, 148, 199, 337
TaqI TCGA 1 cut(s) 318
TasI AATT 2 cut(s) 8, 75
TauI GCSGC 1 cut(s) 425
TfiI GAWTC 2 cut(s) 64, 344
Tru1I TTAA 1 cut(s) 433
Tru9I TTAA 1 cut(s) 433
TscAI CASTG 2 cut(s) 132, 415
TseI GCWGC 5 cut(s) 103, 136, 157, 302, 359
TspDTI ATGAA 4 cut(s) 34, 206, 276, 308
TspRI CASTG 2 cut(s) 132, 415
Tth111I GACNNNGTC 2 cut(s) 127, 146
VneI GTGCAC 1 cut(s) 371
XapI RAATTY 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.