pycom01g05080

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
4611265 .. 4611986
722 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g05080.1

Sequence Viewer

Length: 504 bp
ATGGACAGATTTAGCAGAAGAACAGCACTCTTTCTTTTCTGGTTCATCATCGTCTCGCTCCAGATTCCAAAAATGATCGGGGAAGCGCAACCGGGGGTTGAAAAGAATGAGGAAGCAGATCAGCAAACTGTTTTTGGAAGAACAATGCAAGATACAATGTCTACGCTCTATGAAACAATATCTGTCCTCCAAAAGTCTCATCAAAATGCATGGGACAAAGTTAAAACCATCATAAACGACATGCAGTTGCAATTTTCCCCTCCAAATTTAGAGGGCAGAGACAAAGCAAATGCAAAGGGAAGCGAAGGCGATGCTCAAGGGATGAGAGAAAAAGTGAAAGAGGCAGCACAGAAGAGTTTCAAAACAAGCAAACAAACGGTGGAGGAATCGGCTAAATCTGCAGGCGAAGCTGTGAGAGAGACGGTGCATAAGACAGAAGAAAAGGTAAAGGAGACGGTGGCCTCTCTGCATGAAGAGACTCCTGCTGCTCATGCAGAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.77

Weight (kDa)

5.87

Isoelectric Point (pI)

36.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011958)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 161
AcsI RAATTY 1 cut(s) 265
AgsI TTSAA 2 cut(s) 101, 361
AluBI AGCT 2 cut(s) 410, 499
AluI AGCT 2 cut(s) 410, 499
Alw26I GTCTC 6 cut(s) 58, 201, 273, 413, 446, 470
AoxI GGCC 1 cut(s) 459
ApeKI GCWGC 2 cut(s) 344, 485
ApoI RAATTY 1 cut(s) 265
Asp700I GAANNNNTTC 1 cut(s) 356
AspLEI GCGC 1 cut(s) 88
AsuC2I CCSGG 1 cut(s) 93
BbvI GCAGC 2 cut(s) 356, 472
BccI CCATC 1 cut(s) 236
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BcnI CCSGG 1 cut(s) 93
BcoDI GTCTC 6 cut(s) 58, 201, 273, 413, 446, 470
BfmI CTRYAG 1 cut(s) 399
BisI GCNGC 2 cut(s) 345, 486
BlsI GCNGC 2 cut(s) 346, 487
Bme1390I CCNGG 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 93
BmsI GCATC 1 cut(s) 301
BpmI CTGGAG 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 300
BpuMI CCSGG 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 92
BseGI GGATG 1 cut(s) 327
BseXI GCAGC 2 cut(s) 356, 472
BshFI GGCC 1 cut(s) 461
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 1 cut(s) 227
BsmAI GTCTC 6 cut(s) 58, 201, 273, 413, 446, 470
BsmBI CGTCTC 3 cut(s) 58, 413, 446
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 1 cut(s) 461
Bsp143I GATC 2 cut(s) 75, 118
BspANI GGCC 1 cut(s) 461
BspMAI CTGCAG 1 cut(s) 403
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 2 cut(s) 75, 118
Bst4CI ACNGT 4 cut(s) 130, 379, 424, 457
Bst6I CTCTTC 2 cut(s) 347, 468
BstC8I GCNNGC 1 cut(s) 403
BstF5I GGATG 1 cut(s) 327
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 2 cut(s) 78, 121
BstMAI GTCTC 6 cut(s) 58, 201, 273, 413, 446, 470
BstMBI GATC 2 cut(s) 75, 118
BstMWI GCNNNNNNNGC 3 cut(s) 398, 407, 491
BstNSI RCATGY 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 399
BstV1I GCAGC 2 cut(s) 356, 472
BsuRI GGCC 1 cut(s) 461
BtgZI GCGATG 1 cut(s) 324
BtsCI GGATG 1 cut(s) 327
Cac8I GCNNGC 1 cut(s) 403
CfoI GCGC 1 cut(s) 88
CviAII CATG 4 cut(s) 210, 241, 470, 491
CviJI RGCY 4 cut(s) 392, 410, 461, 499
CviKI_1 RGCY 4 cut(s) 392, 410, 461, 499
DpnI GATC 2 cut(s) 77, 120
DpnII GATC 2 cut(s) 75, 118
Eam1104I CTCTTC 2 cut(s) 347, 468
EarI CTCTTC 2 cut(s) 347, 468
EcoT22I ATGCAT 1 cut(s) 211
Esp3I CGTCTC 3 cut(s) 58, 413, 446
FaeI CATG 4 cut(s) 213, 244, 473, 494
FaiI YATR 7 cut(s) 171, 211, 233, 242, 429, 471, 492
FaqI GGGAC 1 cut(s) 227
FatI CATG 4 cut(s) 209, 240, 469, 490
FblI GTMKAC 1 cut(s) 161
Fnu4HI GCNGC 2 cut(s) 345, 486
FokI GGATG 1 cut(s) 334
Fsp4HI GCNGC 2 cut(s) 345, 486
GlaI GCGC 1 cut(s) 87
GluI GCNGC 2 cut(s) 345, 486
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 1 cut(s) 461
HapII CCGG 1 cut(s) 92
HhaI GCGC 1 cut(s) 88
Hin1II CATG 4 cut(s) 213, 244, 473, 494
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HinfI GANTC 3 cut(s) 64, 386, 478
HpaII CCGG 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 162
Hpy188III TCNNGA 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 162
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 4 cut(s) 130, 379, 424, 457
HpyCH4V TGCA 9 cut(s) 148, 209, 244, 250, 293, 401, 427, 469, 494
HpyF10VI GCNNNNNNNGC 3 cut(s) 398, 407, 491
Hsp92II CATG 4 cut(s) 213, 244, 473, 494
HspAI GCGC 1 cut(s) 86
Kzo9I GATC 2 cut(s) 75, 118
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 5 cut(s) 25, 74, 105, 387, 495
Lsp1109I GCAGC 2 cut(s) 356, 472
LweI GCATC 1 cut(s) 301
MalI GATC 2 cut(s) 77, 120
MboI GATC 2 cut(s) 75, 118
MboII GAAGA 5 cut(s) 30, 150, 364, 449, 485
MluCI AATT 2 cut(s) 251, 265
MlyI GAGTC 1 cut(s) 472
MnlI CCTC 7 cut(s) 103, 197, 265, 270, 334, 376, 472
Mph1103I ATGCAT 1 cut(s) 211
MroXI GAANNNNTTC 1 cut(s) 356
MseI TTAA 2 cut(s) 222, 502
MslI CAYNNNNRTG 1 cut(s) 204
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 93
MwoI GCNNNNNNNGC 3 cut(s) 398, 407, 491
NciI CCSGG 1 cut(s) 93
NdeII GATC 2 cut(s) 75, 118
NlaIII CATG 4 cut(s) 213, 244, 473, 494
NsiI ATGCAT 1 cut(s) 211
NspI RCATGY 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 356
PfeI GAWTC 2 cut(s) 64, 386
PkrI GCNGC 2 cut(s) 346, 487
PleI GAGTC 1 cut(s) 472
PpsI GAGTC 1 cut(s) 472
PstI CTGCAG 1 cut(s) 403
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 2 cut(s) 222, 502
SatI GCNGC 2 cut(s) 345, 486
Sau3AI GATC 2 cut(s) 75, 118
SchI GAGTC 1 cut(s) 472
ScrFI CCNGG 1 cut(s) 93
SetI ASST 3 cut(s) 412, 447, 501
SfaNI GCATC 1 cut(s) 301
SfcI CTRYAG 1 cut(s) 399
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 315
SmoI CTYRAG 1 cut(s) 315
Sse9I AATT 2 cut(s) 251, 265
StyD4I CCNGG 1 cut(s) 91
TaaI ACNGT 4 cut(s) 130, 379, 424, 457
TasI AATT 2 cut(s) 251, 265
TfiI GAWTC 2 cut(s) 64, 386
Tru1I TTAA 2 cut(s) 222, 502
Tru9I TTAA 2 cut(s) 222, 502
TseI GCWGC 2 cut(s) 344, 485
TspDTI ATGAA 3 cut(s) 34, 186, 486
XapI RAATTY 1 cut(s) 265
XceI RCATGY 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 161
XmnI GAANNNNTTC 1 cut(s) 356
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.