Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004151

Physical Location & Seq

Genomic Coordinates Reverse (-)

6050164 .. 6052628

Gene Structure 2465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G17590.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGATAAGAAAGTTTCATTTACTAGCTCTGTGGCACATTCAACTCCACCATACCTTAGTACTTCCATCTCATGGGGACTTCCAACCAAATCCAATGGTGTGACTGAATCACTGAGTTTGAAGGTGGTAGATGCAAGACCAGAACGTCTTATAAACACAAAGAATATCAGTTTCCAGGACCAGGATTCATCTTCAACTCTGTCCTCTGCTCAATCTTCTAACGATGTTACAAGTAGTGGAGATGATAACCCCTCAAGACAAATCTCATTTTTAGCACATTCAGATGTTTGTAAAGGATTTGAAGAAACTCAAAGGAAGCGATTTGCAATTAAATCAGGCTCCTCCACGGCAGGAATCGCTGATATTCACTCTTCTCCTTCCAAGGCTAACTTCTCATTTCACTATGCCGATCCACATTTTGGTGGTTTAATGCCTGCGGCTTACCTACCACAGGCAACAATATGGAATCCCCAAATGACTCGAGTTCCGCTACCATTCGATCTCATAGAGAATGAGCCTGTCTTTGTCAATGCAAAGCAATTCCATGCAATTATGAGGAGGAGGCAACAGCGTGCTAAGCTAGAGGCGCAAAACAAACTAATCAAAGCCCGTAAGCCGTATCTTCATGAATCTCGACATGTTCACGCTCTTAAACGACCTAGAGGATCTGGTGGAAGATTCCTAAACACCAAAAAGCTTCAAGAATCTACAGATCCAAAACAAGACATGCCAATCCAACAGCAACACGCAACGGGAAACATGTCAAGATTTGTGCTTTATCAGTTGCAGAACAGCAATGACTGTGATTGTTCAACCACTTCTCGCTCTGACATCACATCTGCTTCTGACAGCGTTAATCTCTTTGGACACTCTGAATTTCTGATATCAGATTGCCCATCTCAGACAAACCCAACAATGTATGTTCATGGTCAATCAAATGACATGCATGGAGGTAGGAACACACACCATTTCTCTGTCCATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030522 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0045892 GO:0045934 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0104004 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

328

Amino Acids

36.46

Weight (kDa)

9.23

Isoelectric Point (pI)

58.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	172 - 227	2.9e-27	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17590 AT1G17590 AT1G17590 AT1G17590 AT1G72830 AT1G72830 AT1G72830
fragaria_vesca	FvH4_6g34360 FvH4_6g34360 FvH4_6g34360
malus_domestica	MD09G1186200.v1.1
prunus_persica	Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1
pyrus_communis	pycom09g10340
rosa_chinensis	RchiOBHm_Chr2g0144701
rosa_laevigata	RLG00000020102
rosa_multiflora	Rmu_co8510597.1_g000001 Rmu_sc0000227.1_g000003 Rmu_sc0037791.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101060
rosa_rugosa	Rorug02G0388800 Rorug02G0388900 Rorug02G0389000
rosa_samantha	Rh2AG440800 Rh2BG451200 Rh2CG428000 Rh2DG461200
rosa_wichuraiana	Rw2G036060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	152
AasI	GACNNNNNNGTC	1 cut(s)	144
AccB7I	CCANNNNNTGG	2 cut(s)	72, 419
AciI	CCGC	2 cut(s)	437, 488
AclWI	GGATC	3 cut(s)	404, 673, 707
AcsI	RAATTY	1 cut(s)	875
AfaI	GTAC	1 cut(s)	61
AfiI	CCNNNNNNNGG	4 cut(s)	72, 181, 419, 451
AflIII	ACRYGT	2 cut(s)	637, 759
AgsI	TTSAA	6 cut(s)	42, 121, 195, 302, 701, 813
AjnI	CCWGG	2 cut(s)	174, 180
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AluBI	AGCT	3 cut(s)	27, 580, 697
AluI	AGCT	3 cut(s)	27, 580, 697
AlwI	GGATC	3 cut(s)	404, 673, 707
Ama87I	CYCGRG	1 cut(s)	480
ApoI	RAATTY	1 cut(s)	875
AspLEI	GCGC	1 cut(s)	589
AspS9I	GGNCC	1 cut(s)	178
AvaI	CYCGRG	1 cut(s)	480
AvaII	GGWCC	1 cut(s)	178
BccI	CCATC	2 cut(s)	74, 904
BceAI	ACGGC	2 cut(s)	363, 601
BciT130I	CCWGG	2 cut(s)	176, 182
BfaI	CTAG	3 cut(s)	24, 581, 660
BfmI	CTRYAG	1 cut(s)	708
BisI	GCNGC	1 cut(s)	438
BlpI	GCTNAGC	1 cut(s)	576
BlsI	GCNGC	1 cut(s)	439
BmcAI	AGTACT	1 cut(s)	61
Bme1390I	CCNGG	2 cut(s)	176, 182
Bme18I	GGWCC	1 cut(s)	178
BmeT110I	CYCGRG	1 cut(s)	480
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	2 cut(s)	176, 182
BmsI	GCATC	1 cut(s)	121
Bpu1102I	GCTNAGC	1 cut(s)	576
BpuEI	CTTGAG	1 cut(s)	238
BsaJI	CCNNGG	2 cut(s)	345, 381
Bsc4I	CCNNNNNNNGG	4 cut(s)	72, 181, 419, 451
Bse3DI	GCAATG	1 cut(s)	802
BseBI	CCWGG	2 cut(s)	176, 182
BseDI	CCNNGG	2 cut(s)	345, 381
BseLI	CCNNNNNNNGG	4 cut(s)	72, 181, 419, 451
BseMI	GCAATG	1 cut(s)	802
BseMII	CTCAG	2 cut(s)	104, 914
BseRI	GAGGAG	3 cut(s)	331, 571, 574
BsiHKCI	CYCGRG	1 cut(s)	480
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	4 cut(s)	72, 181, 419, 451
BsmFI	GGGAC	1 cut(s)	90
BsoBI	CYCGRG	1 cut(s)	480
Bsp143I	GATC	4 cut(s)	409, 499, 665, 712
Bsp1720I	GCTNAGC	1 cut(s)	576
BspACI	CCGC	2 cut(s)	437, 488
BspCNI	CTCAG	2 cut(s)	105, 913
BspHI	TCATGA	1 cut(s)	625
BspLI	GGNNCC	1 cut(s)	340
BspPI	GGATC	3 cut(s)	404, 673, 707
BsrDI	GCAATG	1 cut(s)	802
BssECI	CCNNGG	2 cut(s)	345, 381
BssMI	GATC	4 cut(s)	409, 499, 665, 712
BssT1I	CCWWGG	1 cut(s)	381
Bst2UI	CCWGG	2 cut(s)	176, 182
Bst4CI	ACNGT	1 cut(s)	803
Bst6I	CTCTTC	1 cut(s)	376
BstC8I	GCNNGC	2 cut(s)	435, 573
BstDEI	CTNAG	4 cut(s)	56, 113, 576, 900
BstDSI	CCRYGG	1 cut(s)	345
BstENI	CCTNNNNNAGG	1 cut(s)	449
BstHHI	GCGC	1 cut(s)	589
BstKTI	GATC	4 cut(s)	412, 502, 668, 715
BstMBI	GATC	4 cut(s)	409, 499, 665, 712
BstMWI	GCNNNNNNNGC	3 cut(s)	356, 577, 586
BstNI	CCWGG	2 cut(s)	176, 182
BstNSI	RCATGY	4 cut(s)	641, 730, 763, 946
BstSCI	CCNGG	2 cut(s)	174, 180
BstSFI	CTRYAG	1 cut(s)	708
BstX2I	RGATCY	2 cut(s)	665, 712
BstYI	RGATCY	2 cut(s)	665, 712
BtgI	CCRYGG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	110
Cac8I	GCNNGC	2 cut(s)	435, 573
CciI	TCATGA	1 cut(s)	625
CfoI	GCGC	1 cut(s)	589
Cfr13I	GGNCC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	9 cut(s)	72, 545, 626, 638, 727, 760, 926, 943, 947
CviJI	RGCY	9 cut(s)	27, 339, 386, 440, 517, 580, 608, 616, 697
CviKI_1	RGCY	9 cut(s)	27, 339, 386, 440, 517, 580, 608, 616, 697
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	4 cut(s)	56, 113, 576, 900
DpnI	GATC	4 cut(s)	411, 501, 667, 714
DpnII	GATC	4 cut(s)	409, 499, 665, 712
DrdI	GACNNNNNNGTC	1 cut(s)	144
DseDI	GACNNNNNNGTC	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	376
EarI	CTCTTC	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	381
Eco32I	GATATC	1 cut(s)	885
Eco47I	GGWCC	1 cut(s)	178
Eco88I	CYCGRG	1 cut(s)	480
EcoNI	CCTNNNNNAGG	1 cut(s)	449
EcoRII	CCWGG	2 cut(s)	174, 180
EcoRV	GATATC	1 cut(s)	885
EcoT14I	CCWWGG	1 cut(s)	381
EcoT22I	ATGCAT	1 cut(s)	948
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	9 cut(s)	75, 548, 629, 641, 730, 763, 929, 946, 950
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	9 cut(s)	71, 544, 625, 637, 726, 759, 925, 942, 946
Fnu4HI	GCNGC	1 cut(s)	438
Fsp4HI	GCNGC	1 cut(s)	438
FspBI	CTAG	3 cut(s)	24, 581, 660
GlaI	GCGC	1 cut(s)	588
GluI	GCNGC	1 cut(s)	438
HhaI	GCGC	1 cut(s)	589
Hin1II	CATG	9 cut(s)	75, 548, 629, 641, 730, 763, 929, 946, 950
Hin6I	GCGC	1 cut(s)	587
HinP1I	GCGC	1 cut(s)	587
HindIII	AAGCTT	1 cut(s)	695
HinfI	GANTC	8 cut(s)	107, 185, 354, 466, 478, 629, 678, 704
Hpy166II	GTNNAC	1 cut(s)	643
Hpy188I	TCNGA	8 cut(s)	283, 829, 847, 874, 882, 889, 903, 986
Hpy188III	TCNNGA	5 cut(s)	255, 626, 633, 701, 765
Hpy8I	GTNNAC	1 cut(s)	643
HpyAV	CCTTC	2 cut(s)	115, 387
HpyCH4III	ACNGT	1 cut(s)	803
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	6 cut(s)	134, 326, 533, 548, 787, 946
HpyF10VI	GCNNNNNNNGC	3 cut(s)	356, 577, 586
HpyF3I	CTNAG	4 cut(s)	56, 113, 576, 900
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	9 cut(s)	75, 548, 629, 641, 730, 763, 929, 946, 950
HspAI	GCGC	1 cut(s)	587
Kzo9I	GATC	4 cut(s)	409, 499, 665, 712
LmnI	GCTCC	1 cut(s)	344
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	3 cut(s)	24, 581, 660
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	2 cut(s)	100, 226
MalI	GATC	4 cut(s)	411, 501, 667, 714
MboI	GATC	4 cut(s)	409, 499, 665, 712
MboII	GAAGA	6 cut(s)	183, 207, 314, 363, 614, 687
MflI	RGATCY	2 cut(s)	665, 712
MluCI	AATT	4 cut(s)	327, 539, 549, 875
MlyI	GAGTC	1 cut(s)	472
MmeI	TCCRAC	2 cut(s)	107, 760
MnlI	CCTC	9 cut(s)	214, 262, 352, 549, 552, 555, 577, 656, 944
Mph1103I	ATGCAT	1 cut(s)	948
MseI	TTAA	4 cut(s)	330, 428, 651, 855
MslI	CAYNNNNRTG	2 cut(s)	282, 420
MspR9I	CCNGG	2 cut(s)	176, 182
MvaI	CCWGG	2 cut(s)	176, 182
MwoI	GCNNNNNNNGC	3 cut(s)	356, 577, 586
NdeII	GATC	4 cut(s)	409, 499, 665, 712
NlaIII	CATG	9 cut(s)	75, 548, 629, 641, 730, 763, 929, 946, 950
NlaIV	GGNNCC	1 cut(s)	340
NmuCI	GTSAC	1 cut(s)	100
NsiI	ATGCAT	1 cut(s)	948
NspI	RCATGY	4 cut(s)	641, 730, 763, 946
PaeR7I	CTCGAG	1 cut(s)	480
PagI	TCATGA	1 cut(s)	625
PciI	ACATGT	2 cut(s)	637, 759
PfeI	GAWTC	7 cut(s)	107, 185, 354, 466, 629, 678, 704
PflMI	CCANNNNNTGG	2 cut(s)	72, 419
PfoI	TCCNGGA	1 cut(s)	174
PkrI	GCNGC	1 cut(s)	439
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
PscI	ACATGT	2 cut(s)	637, 759
PsiI	TTATAA	1 cut(s)	152
Psp6I	CCWGG	2 cut(s)	174, 180
PspGI	CCWGG	2 cut(s)	174, 180
PspN4I	GGNNCC	1 cut(s)	340
PspPI	GGNCC	1 cut(s)	178
PspXI	VCTCGAGB	1 cut(s)	480
PsuI	RGATCY	2 cut(s)	665, 712
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
RseI	CAYNNNNRTG	2 cut(s)	282, 420
SaqAI	TTAA	4 cut(s)	330, 428, 651, 855
SatI	GCNGC	1 cut(s)	438
Sau3AI	GATC	4 cut(s)	409, 499, 665, 712
Sau96I	GGNCC	1 cut(s)	178
ScaI	AGTACT	1 cut(s)	61
SchI	GAGTC	1 cut(s)	472
ScrFI	CCNGG	2 cut(s)	176, 182
SetI	ASST	9 cut(s)	29, 57, 126, 148, 447, 582, 661, 699, 955
SfaNI	GCATC	1 cut(s)	121
SfcI	CTRYAG	1 cut(s)	708
Sfr274I	CTCGAG	1 cut(s)	480
SinI	GGWCC	1 cut(s)	178
SlaI	CTCGAG	1 cut(s)	480
SmiMI	CAYNNNNRTG	2 cut(s)	282, 420
SmlI	CTYRAG	2 cut(s)	253, 480
SmoI	CTYRAG	2 cut(s)	253, 480
Sse9I	AATT	4 cut(s)	327, 539, 549, 875
SsiI	CCGC	2 cut(s)	437, 488
SspMI	CTAG	3 cut(s)	24, 581, 660
StyD4I	CCNGG	2 cut(s)	174, 180
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	1 cut(s)	803
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	3 cut(s)	481, 498, 634
TasI	AATT	4 cut(s)	327, 539, 549, 875
TatI	WGTACW	1 cut(s)	59
TauI	GCSGC	1 cut(s)	440
TfiI	GAWTC	7 cut(s)	107, 185, 354, 466, 629, 678, 704
Tru1I	TTAA	4 cut(s)	330, 428, 651, 855
Tru9I	TTAA	4 cut(s)	330, 428, 651, 855
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	5 cut(s)	6, 177, 614, 642, 914
TspRI	CASTG	1 cut(s)	117
Van91I	CCANNNNNTGG	2 cut(s)	72, 419
VpaK11BI	GGWCC	1 cut(s)	178
XagI	CCTNNNNNAGG	1 cut(s)	449
XapI	RAATTY	1 cut(s)	875
XceI	RCATGY	4 cut(s)	641, 730, 763, 946
XhoI	CTCGAG	1 cut(s)	480
XspI	CTAG	3 cut(s)	24, 581, 660
ZrmI	AGTACT	1 cut(s)	61
Zsp2I	ATGCAT	1 cut(s)	948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.