Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004151

Physical Location & Seq

Genomic Coordinates Forward (+)

16163341 .. 16168480

Gene Structure 5140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1186200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGGCGTGTCACTACATAATTATCATAACAGCAAGCAATCTCGAATTAACTTTCAAGATCAGGATTCATCCTCAACTCTGTCGACAGGTCAATCTCTCTCTGAAGTTGATAGTATGAAAGAAGGCAACCCCTGTGGGCAAGGCATAGTTTCAGCACAATCAGGATATAATGAAACACAAGGGAAGCCTGTTGGGGCCCACATGAAATCACTATCACCAATGGAAAATCAGAGCTTTATCTTCCCTTCACAAATTGATGTTAGCCGTTCAATTGGTCATATTCCTTTCCACTATGCTGAGCCATACTTTGGAAGCTTACTGGCTACTGCTTGTGGGCCACAAGCTACGATTCATCATCCTCAGGTGGTGGGGATAACTCCTGGTAGGGTTCCCTTGCCTCTTGATCTTACAGAAGATGAACCTATTTATGTAAACGCGAAACAGTACCGTGCAATTCTCCGGAGGAGGCAATTTCGCGCTAAGCTTGAAGCTCAGAACAAACTCGTCAAAGTTCGTAAGCCGTATCTTCATGAATCTCGGCATGTTCATGCATTGAAGAGGGCTAGAGGAACTGGTGGGCGCTTTCTCAACGTGAAGAAGGTCCAGGATTCCAAGCCAAATACTACACACCTCAGAGTGAATGCTTCAGGCGCTGCTCAGCTACATTTGATCGGAAATATGTCAGAATCTGAAGTTCACGAACGTGACAACTATAGAGATGGTGCTTCCACTACCTCTTGCTCTGAAGTCACAAGCACTTCCAACGGTGATGACGTATTTCCACGGCAAGCTTTGAGGTTCTCTGCCTACCCCTCTCACATTGGTGGGACCATGCAAGTTCCTTTTGTTGATGTGCGTGGCGGCGGGAACCAGCACCATCATTCCATCCTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030522 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0045892 GO:0045934 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0104004 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

299

Amino Acids

32.86

Weight (kDa)

9.44

Isoelectric Point (pI)

52.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	140 - 195	2.7e-26	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17590 AT1G17590 AT1G17590 AT1G17590 AT1G72830 AT1G72830 AT1G72830
fragaria_vesca	FvH4_6g34360 FvH4_6g34360 FvH4_6g34360
malus_domestica	MD09G1186200.v1.1
prunus_persica	Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1
pyrus_communis	pycom09g10340
rosa_chinensis	RchiOBHm_Chr2g0144701
rosa_laevigata	RLG00000020102
rosa_multiflora	Rmu_co8510597.1_g000001 Rmu_sc0000227.1_g000003 Rmu_sc0037791.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101060
rosa_rugosa	Rorug02G0388800 Rorug02G0388900 Rorug02G0389000
rosa_samantha	Rh2AG440800 Rh2BG451200 Rh2CG428000 Rh2DG461200
rosa_wichuraiana	Rw2G036060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	308
AccI	GTMKAC	1 cut(s)	83
AccII	CGCG	2 cut(s)	437, 477
AccIII	TCCGGA	1 cut(s)	459
AciI	CCGC	2 cut(s)	861, 864
AcuI	CTGAAG	4 cut(s)	123, 630, 711, 765
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	2 cut(s)	308, 891
AgsI	TTSAA	4 cut(s)	56, 270, 488, 556
AjnI	CCWGG	2 cut(s)	379, 603
AleI	CACNNNNGTG	2 cut(s)	702, 822
AluBI	AGCT	7 cut(s)	234, 315, 344, 484, 491, 661, 791
AluI	AGCT	7 cut(s)	234, 315, 344, 484, 491, 661, 791
AlwNI	CAGNNNCTG	2 cut(s)	653, 689
Aor13HI	TCCGGA	1 cut(s)	459
AoxI	GGCC	2 cut(s)	195, 335
ApaI	GGGCCC	1 cut(s)	199
ApeKI	GCWGC	1 cut(s)	653
AspLEI	GCGC	3 cut(s)	479, 582, 653
AspS9I	GGNCC	5 cut(s)	195, 196, 335, 601, 828
AsuHPI	GGTGA	2 cut(s)	207, 779
AvaII	GGWCC	2 cut(s)	601, 828
AxyI	CCTNAGG	1 cut(s)	360
BaeGI	GKGCMC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	640
BccI	CCATC	3 cut(s)	713, 885, 893
BceAI	ACGGC	3 cut(s)	249, 505, 800
BciT130I	CCWGG	2 cut(s)	381, 605
BfaI	CTAG	1 cut(s)	564
BfmI	CTRYAG	1 cut(s)	712
BfoI	RGCGCY	2 cut(s)	583, 654
BisI	GCNGC	2 cut(s)	654, 862
BlpI	GCTNAGC	3 cut(s)	297, 480, 657
BlsI	GCNGC	2 cut(s)	655, 863
Bme1390I	CCNGG	2 cut(s)	381, 605
Bme18I	GGWCC	2 cut(s)	601, 828
BmgT120I	GGNCC	5 cut(s)	195, 196, 335, 601, 828
BmiI	GGNNCC	5 cut(s)	196, 197, 390, 829, 869
BmrFI	CCNGG	2 cut(s)	381, 605
Bpu1102I	GCTNAGC	3 cut(s)	297, 480, 657
BsaJI	CCNNGG	1 cut(s)	782
BsaWI	WCCGGW	2 cut(s)	459, 891
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 891
Bse1I	ACTGG	2 cut(s)	324, 577
Bse21I	CCTNAGG	1 cut(s)	360
BseAI	TCCGGA	1 cut(s)	459
BseBI	CCWGG	2 cut(s)	381, 605
BseDI	CCNNGG	1 cut(s)	782
BseGI	GGATG	3 cut(s)	68, 355, 885
BseLI	CCNNNNNNNGG	2 cut(s)	308, 891
BseMII	CTCAG	5 cut(s)	288, 374, 506, 646, 671
BseNI	ACTGG	2 cut(s)	324, 577
BseRI	GAGGAG	1 cut(s)	478
BseSI	GKGCMC	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	640
Bsh1236I	CGCG	2 cut(s)	437, 477
BshFI	GGCC	2 cut(s)	197, 337
BsiSI	CCGG	2 cut(s)	460, 892
BslFI	GGGAC	1 cut(s)	841
BslI	CCNNNNNNNGG	2 cut(s)	308, 891
BsmFI	GGGAC	1 cut(s)	841
BsmI	GAATGC	1 cut(s)	646
BsnI	GGCC	2 cut(s)	197, 337
Bsp120I	GGGCCC	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp13I	TCCGGA	1 cut(s)	459
Bsp143I	GATC	3 cut(s)	58, 403, 669
Bsp1720I	GCTNAGC	3 cut(s)	297, 480, 657
BspACI	CCGC	2 cut(s)	861, 864
BspANI	GGCC	2 cut(s)	197, 337
BspCNI	CTCAG	5 cut(s)	289, 373, 505, 645, 670
BspEI	TCCGGA	1 cut(s)	459
BspFNI	CGCG	2 cut(s)	437, 477
BspHI	TCATGA	1 cut(s)	529
BspLI	GGNNCC	5 cut(s)	196, 197, 390, 829, 869
BsrI	ACTGG	2 cut(s)	324, 577
BssECI	CCNNGG	1 cut(s)	782
BssMI	GATC	3 cut(s)	58, 403, 669
Bst2UI	CCWGG	2 cut(s)	381, 605
Bst4CI	ACNGT	3 cut(s)	444, 449, 767
Bst6I	CTCTTC	1 cut(s)	551
BstC8I	GCNNGC	2 cut(s)	35, 789
BstDEI	CTNAG	6 cut(s)	297, 360, 480, 492, 632, 657
BstDSI	CCRYGG	1 cut(s)	782
BstF5I	GGATG	3 cut(s)	68, 355, 885
BstFNI	CGCG	2 cut(s)	437, 477
BstH2I	RGCGCY	2 cut(s)	583, 654
BstHHI	GCGC	3 cut(s)	479, 582, 653
BstKTI	GATC	3 cut(s)	61, 406, 672
BstMBI	GATC	3 cut(s)	58, 403, 669
BstMWI	GCNNNNNNNGC	1 cut(s)	650
BstNI	CCWGG	2 cut(s)	381, 605
BstNSI	RCATGY	1 cut(s)	545
BstSCI	CCNGG	2 cut(s)	379, 603
BstSFI	CTRYAG	1 cut(s)	712
BstSLI	GKGCMC	1 cut(s)	199
BstUI	CGCG	2 cut(s)	437, 477
BstV1I	GCAGC	1 cut(s)	640
Bsu36I	CCTNAGG	1 cut(s)	360
BsuRI	GGCC	2 cut(s)	197, 337
BtgI	CCRYGG	1 cut(s)	782
BtsCI	GGATG	3 cut(s)	68, 355, 885
Cac8I	GCNNGC	2 cut(s)	35, 789
CaiI	CAGNNNCTG	2 cut(s)	653, 689
CciI	TCATGA	1 cut(s)	529
CfoI	GCGC	3 cut(s)	479, 582, 653
Cfr13I	GGNCC	5 cut(s)	195, 196, 335, 601, 828
Csp6I	GTAC	1 cut(s)	445
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CviAII	CATG	5 cut(s)	202, 530, 542, 548, 832
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	6 cut(s)	297, 360, 480, 492, 632, 657
DpnI	GATC	3 cut(s)	60, 405, 671
DpnII	GATC	3 cut(s)	58, 403, 669
Eam1104I	CTCTTC	1 cut(s)	551
EarI	CTCTTC	1 cut(s)	551
Eco24I	GRGCYC	1 cut(s)	199
Eco47I	GGWCC	2 cut(s)	601, 828
Eco57I	CTGAAG	4 cut(s)	123, 630, 711, 765
Eco81I	CCTNAGG	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	195
EcoRII	CCWGG	2 cut(s)	379, 603
EcoT22I	ATGCAT	1 cut(s)	553
EcoT38I	GRGCYC	1 cut(s)	199
FaeI	CATG	5 cut(s)	205, 533, 545, 551, 835
FaqI	GGGAC	1 cut(s)	841
FatI	CATG	5 cut(s)	201, 529, 541, 547, 831
FauI	CCCGC	1 cut(s)	857
FblI	GTMKAC	1 cut(s)	83
Fnu4HI	GCNGC	2 cut(s)	654, 862
FokI	GGATG	3 cut(s)	55, 342, 872
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	2 cut(s)	654, 862
FspBI	CTAG	1 cut(s)	564
GlaI	GCGC	3 cut(s)	478, 581, 652
GluI	GCNGC	2 cut(s)	654, 862
HaeII	RGCGCY	2 cut(s)	583, 654
HaeIII	GGCC	2 cut(s)	197, 337
HapII	CCGG	2 cut(s)	460, 892
HhaI	GCGC	3 cut(s)	479, 582, 653
Hin1II	CATG	5 cut(s)	205, 533, 545, 551, 835
Hin6I	GCGC	3 cut(s)	477, 580, 651
HinP1I	GCGC	3 cut(s)	477, 580, 651
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HindIII	AAGCTT	3 cut(s)	313, 482, 789
HinfI	GANTC	5 cut(s)	65, 349, 533, 608, 686
HpaII	CCGG	2 cut(s)	460, 892
HphI	GGTGA	2 cut(s)	207, 779
Hpy166II	GTNNAC	3 cut(s)	84, 433, 697
Hpy188I	TCNGA	8 cut(s)	103, 231, 495, 635, 674, 685, 691, 745
Hpy188III	TCNNGA	8 cut(s)	42, 56, 62, 162, 401, 460, 530, 698
Hpy8I	GTNNAC	3 cut(s)	84, 433, 697
HpyAV	CCTTC	3 cut(s)	116, 255, 592
HpyCH4III	ACNGT	3 cut(s)	444, 449, 767
HpyCH4IV	ACGT	3 cut(s)	591, 703, 774
HpyCH4V	TGCA	3 cut(s)	452, 551, 835
HpyF10VI	GCNNNNNNNGC	1 cut(s)	650
HpyF3I	CTNAG	6 cut(s)	297, 360, 480, 492, 632, 657
HpySE526I	ACGT	3 cut(s)	591, 703, 774
Hsp92II	CATG	5 cut(s)	205, 533, 545, 551, 835
HspAI	GCGC	3 cut(s)	477, 580, 651
Kpn2I	TCCGGA	1 cut(s)	459
Kzo9I	GATC	3 cut(s)	58, 403, 669
Lsp1109I	GCAGC	1 cut(s)	640
MaeI	CTAG	1 cut(s)	564
MaeII	ACGT	3 cut(s)	591, 703, 774
MaeIII	GTNAC	3 cut(s)	9, 704, 748
MalI	GATC	3 cut(s)	60, 405, 671
MboI	GATC	3 cut(s)	58, 403, 669
MboII	GAAGA	5 cut(s)	232, 425, 518, 568, 607
MfeI	CAATTG	1 cut(s)	270
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	6 cut(s)	19, 45, 252, 270, 453, 470
MmeI	TCCRAC	1 cut(s)	786
Mph1103I	ATGCAT	1 cut(s)	553
MroI	TCCGGA	1 cut(s)	459
MseI	TTAA	1 cut(s)	48
MslI	CAYNNNNRTG	3 cut(s)	546, 702, 822
MspI	CCGG	2 cut(s)	460, 892
MspR9I	CCNGG	2 cut(s)	381, 605
MunI	CAATTG	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	646
MvaI	CCWGG	2 cut(s)	381, 605
MvnI	CGCG	2 cut(s)	437, 477
MwoI	GCNNNNNNNGC	1 cut(s)	650
NdeII	GATC	3 cut(s)	58, 403, 669
NlaIII	CATG	5 cut(s)	205, 533, 545, 551, 835
NlaIV	GGNNCC	5 cut(s)	196, 197, 390, 829, 869
NmeAIII	GCCGAG	1 cut(s)	517
NmuCI	GTSAC	3 cut(s)	9, 704, 748
NsiI	ATGCAT	1 cut(s)	553
NspI	RCATGY	1 cut(s)	545
OliI	CACNNNNGTG	2 cut(s)	702, 822
PagI	TCATGA	1 cut(s)	529
PcsI	WCGNNNNNNNCGW	1 cut(s)	771
PctI	GAATGC	1 cut(s)	646
PfeI	GAWTC	5 cut(s)	65, 349, 533, 608, 686
PflMI	CCANNNNNTGG	1 cut(s)	308
PfoI	TCCNGGA	1 cut(s)	603
PkrI	GCNGC	2 cut(s)	655, 863
Psp6I	CCWGG	2 cut(s)	379, 603
PspGI	CCWGG	2 cut(s)	379, 603
PspN4I	GGNNCC	5 cut(s)	196, 197, 390, 829, 869
PspOMI	GGGCCC	1 cut(s)	195
PspPI	GGNCC	5 cut(s)	195, 196, 335, 601, 828
PstNI	CAGNNNCTG	2 cut(s)	653, 689
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	3 cut(s)	546, 702, 822
SalI	GTCGAC	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	2 cut(s)	654, 862
Sau3AI	GATC	3 cut(s)	58, 403, 669
Sau96I	GGNCC	5 cut(s)	195, 196, 335, 601, 828
ScrFI	CCNGG	2 cut(s)	381, 605
SduI	GDGCHC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	712
SinI	GGWCC	2 cut(s)	601, 828
SmiMI	CAYNNNNRTG	3 cut(s)	546, 702, 822
Sse9I	AATT	6 cut(s)	19, 45, 252, 270, 453, 470
SsiI	CCGC	2 cut(s)	861, 864
SspMI	CTAG	1 cut(s)	564
StyD4I	CCNGG	2 cut(s)	379, 603
TaaI	ACNGT	3 cut(s)	444, 449, 767
TaiI	ACGT	3 cut(s)	594, 706, 777
TaqI	TCGA	2 cut(s)	43, 83
TasI	AATT	6 cut(s)	19, 45, 252, 270, 453, 470
TauI	GCSGC	1 cut(s)	864
TfiI	GAWTC	5 cut(s)	65, 349, 533, 608, 686
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TseFI	GTSAC	3 cut(s)	9, 704, 748
TseI	GCWGC	1 cut(s)	653
Tsp45I	GTSAC	3 cut(s)	9, 704, 748
TspDTI	ATGAA	9 cut(s)	57, 131, 186, 218, 341, 432, 518, 536, 546
Van91I	CCANNNNNTGG	1 cut(s)	308
VpaK11BI	GGWCC	2 cut(s)	601, 828
XceI	RCATGY	1 cut(s)	545
XmiI	GTMKAC	1 cut(s)	83
XspI	CTAG	1 cut(s)	564
Zsp2I	ATGCAT	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.