Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004151

Physical Location & Seq

Genomic Coordinates Forward (+)

49590054 .. 49590467

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0389000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGAGCACTGGCCGTTGAACTCGAGGAGCCGGAATGGATCAGTGGCCGTCGAACTCGAGGAGCCGGAATGGATCAGTGGCCGTCAAACTCGAGGAGCCGGAATGGAGGATGCAAGGGCAGCAAGCGGCTCGGCGGTAGGCTGGCTCAGTGGCCGTCGCCATCGTCGTCGACCTCGAGGAGCCGGAGTACGTGGAGGAGGCAGAGGCAGCAAACGAAGAGCTTCTAGAGGGAGGACCAGTCGTCGCAAGCTACTGTACCTGCGGACCAGATTGGTGTTTGTTTTCGACGGCGGAACTCTGGCGCTCAAGCGCCGCACTGTGATCGCTCGCCGGAGACAGCGTGAGAATTCTCAGGCTAAGCTCCACAAGACCGCCGAGAAATTGCTTCTCAATCATGTAAGCAAATTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030522 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0045892 GO:0045934 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0104004 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

137

Amino Acids

15.6

Weight (kDa)

12.0

Isoelectric Point (pI)

68.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17590 AT1G17590 AT1G17590 AT1G17590 AT1G72830 AT1G72830 AT1G72830
fragaria_vesca	FvH4_6g34360 FvH4_6g34360 FvH4_6g34360
malus_domestica	MD09G1186200.v1.1
prunus_persica	Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1
pyrus_communis	pycom09g10340
rosa_chinensis	RchiOBHm_Chr2g0144701
rosa_laevigata	RLG00000020102
rosa_multiflora	Rmu_co8510597.1_g000001 Rmu_sc0000227.1_g000003 Rmu_sc0037791.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101060
rosa_rugosa	Rorug02G0388800 Rorug02G0388900 Rorug02G0389000
rosa_samantha	Rh2AG440800 Rh2BG451200 Rh2CG428000 Rh2DG461200
rosa_wichuraiana	Rw2G036060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	174
Acc36I	ACCTGC	1 cut(s)	267
AccI	GTMKAC	1 cut(s)	169
AciI	CCGC	6 cut(s)	126, 134, 262, 291, 313, 372
AclWI	GGATC	2 cut(s)	46, 80
AcoI	YGGCCR	4 cut(s)	11, 45, 79, 151
AcsI	RAATTY	2 cut(s)	346, 404
AfaI	GTAC	2 cut(s)	189, 257
AgsI	TTSAA	1 cut(s)	19
AhdI	GACNNNNNGTC	1 cut(s)	240
AluBI	AGCT	3 cut(s)	221, 250, 361
AluI	AGCT	3 cut(s)	221, 250, 361
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	328
AlwI	GGATC	2 cut(s)	46, 80
Ama87I	CYCGRG	4 cut(s)	22, 56, 90, 174
AoxI	GGCC	4 cut(s)	11, 45, 79, 151
ApeKI	GCWGC	2 cut(s)	119, 207
ApoI	RAATTY	2 cut(s)	346, 404
Asp700I	GAANNNNTTC	1 cut(s)	220
AspLEI	GCGC	2 cut(s)	304, 312
AspS9I	GGNCC	2 cut(s)	234, 264
AvaI	CYCGRG	4 cut(s)	22, 56, 90, 174
AvaII	GGWCC	2 cut(s)	234, 264
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	131, 219
BccI	CCATC	1 cut(s)	168
BceAI	ACGGC	4 cut(s)	32, 66, 138, 304
BcgI	CGANNNNNNTGC	4 cut(s)	111, 145, 304, 338
BcoDI	GTCTC	1 cut(s)	328
BfaI	CTAG	1 cut(s)	225
BfoI	RGCGCY	2 cut(s)	305, 313
BfuAI	ACCTGC	1 cut(s)	267
BisI	GCNGC	4 cut(s)	120, 127, 208, 313
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	4 cut(s)	121, 128, 209, 314
Bme18I	GGWCC	2 cut(s)	234, 264
BmeRI	GACNNNNNGTC	1 cut(s)	240
BmeT110I	CYCGRG	4 cut(s)	22, 56, 90, 174
BmgT120I	GGNCC	2 cut(s)	234, 264
BmiI	GGNNCC	4 cut(s)	29, 63, 97, 181
BmsI	GCATC	1 cut(s)	100
Bpu1102I	GCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	290
BsaAI	YACGTR	1 cut(s)	191
BsaXI	ACNNNNNCTCC	6 cut(s)	171, 201, 223, 253, 325, 355
Bse1I	ACTGG	2 cut(s)	14, 237
BseGI	GGATG	1 cut(s)	115
BseMII	CTCAG	2 cut(s)	160, 365
BseNI	ACTGG	2 cut(s)	14, 237
BseRI	GAGGAG	5 cut(s)	40, 74, 108, 192, 210
BseXI	GCAGC	2 cut(s)	131, 219
BshFI	GGCC	4 cut(s)	13, 47, 81, 153
BsiHKAI	GWGCWC	1 cut(s)	9
BsiHKCI	CYCGRG	4 cut(s)	22, 56, 90, 174
BsiSI	CCGG	5 cut(s)	31, 65, 99, 183, 331
BsmAI	GTCTC	1 cut(s)	328
BsnI	GGCC	4 cut(s)	13, 47, 81, 153
BsoBI	CYCGRG	4 cut(s)	22, 56, 90, 174
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	3 cut(s)	38, 72, 321
Bsp1720I	GCTNAGC	1 cut(s)	357
BspACI	CCGC	6 cut(s)	126, 134, 262, 291, 313, 372
BspANI	GGCC	4 cut(s)	13, 47, 81, 153
BspCNI	CTCAG	2 cut(s)	159, 364
BspLI	GGNNCC	4 cut(s)	29, 63, 97, 181
BspMI	ACCTGC	1 cut(s)	267
BspPI	GGATC	2 cut(s)	46, 80
BspQI	GCTCTTC	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	14, 237
BssMI	GATC	3 cut(s)	38, 72, 321
Bst4CI	ACNGT	2 cut(s)	255, 319
Bst6I	CTCTTC	1 cut(s)	211
BstBAI	YACGTR	1 cut(s)	191
BstC8I	GCNNGC	4 cut(s)	124, 143, 248, 328
BstDEI	CTNAG	3 cut(s)	146, 351, 357
BstF5I	GGATG	1 cut(s)	115
BstH2I	RGCGCY	2 cut(s)	305, 313
BstHHI	GCGC	2 cut(s)	304, 312
BstKTI	GATC	3 cut(s)	41, 75, 324
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	3 cut(s)	38, 72, 321
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 207
BstV1I	GCAGC	2 cut(s)	131, 219
BsuRI	GGCC	4 cut(s)	13, 47, 81, 153
BtsCI	GGATG	1 cut(s)	115
BtsIMutI	CAGTG	5 cut(s)	7, 48, 82, 154, 315
BveI	ACCTGC	1 cut(s)	267
Cac8I	GCNNGC	4 cut(s)	124, 143, 248, 328
CfoI	GCGC	2 cut(s)	304, 312
Cfr13I	GGNCC	2 cut(s)	234, 264
Csp6I	GTAC	2 cut(s)	188, 256
CviAII	CATG	1 cut(s)	395
CviQI	GTAC	2 cut(s)	188, 256
DdeI	CTNAG	3 cut(s)	146, 351, 357
DpnI	GATC	3 cut(s)	40, 74, 323
DpnII	GATC	3 cut(s)	38, 72, 321
DriI	GACNNNNNGTC	1 cut(s)	240
EaeI	YGGCCR	4 cut(s)	11, 45, 79, 151
Eam1104I	CTCTTC	1 cut(s)	211
Eam1105I	GACNNNNNGTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	211
EciI	GGCGGA	1 cut(s)	306
Eco47I	GGWCC	2 cut(s)	234, 264
Eco88I	CYCGRG	4 cut(s)	22, 56, 90, 174
EcoRI	GAATTC	1 cut(s)	346
FaeI	CATG	1 cut(s)	398
FaiI	YATR	1 cut(s)	396
FatI	CATG	1 cut(s)	394
FblI	GTMKAC	1 cut(s)	169
Fnu4HI	GCNGC	4 cut(s)	120, 127, 208, 313
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	4 cut(s)	120, 127, 208, 313
FspBI	CTAG	1 cut(s)	225
GlaI	GCGC	2 cut(s)	303, 311
GluI	GCNGC	4 cut(s)	120, 127, 208, 313
HaeII	RGCGCY	2 cut(s)	305, 313
HaeIII	GGCC	4 cut(s)	13, 47, 81, 153
HapII	CCGG	5 cut(s)	31, 65, 99, 183, 331
HhaI	GCGC	2 cut(s)	304, 312
Hin1II	CATG	1 cut(s)	398
Hin6I	GCGC	2 cut(s)	302, 310
HinP1I	GCGC	2 cut(s)	302, 310
HincII	GTYRAC	1 cut(s)	170
HindII	GTYRAC	1 cut(s)	170
HpaII	CCGG	5 cut(s)	31, 65, 99, 183, 331
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188III	TCNNGA	1 cut(s)	225
Hpy8I	GTNNAC	1 cut(s)	170
Hpy99I	CGWCG	6 cut(s)	53, 159, 168, 171, 246, 290
HpyCH4III	ACNGT	2 cut(s)	255, 319
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	1 cut(s)	113
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 207
HpyF3I	CTNAG	3 cut(s)	146, 351, 357
HpySE526I	ACGT	1 cut(s)	190
Hsp92II	CATG	1 cut(s)	398
HspAI	GCGC	2 cut(s)	302, 310
Kzo9I	GATC	3 cut(s)	38, 72, 321
LguI	GCTCTTC	1 cut(s)	211
LmnI	GCTCC	6 cut(s)	4, 27, 61, 95, 179, 366
Lsp1109I	GCAGC	2 cut(s)	131, 219
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	1 cut(s)	190
MalI	GATC	3 cut(s)	40, 74, 323
MboI	GATC	3 cut(s)	38, 72, 321
MboII	GAAGA	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	3 cut(s)	346, 380, 404
MroXI	GAANNNNTTC	1 cut(s)	220
MspI	CCGG	5 cut(s)	31, 65, 99, 183, 331
MwoI	GCNNNNNNNGC	2 cut(s)	119, 207
NdeII	GATC	3 cut(s)	38, 72, 321
NlaIII	CATG	1 cut(s)	398
NlaIV	GGNNCC	4 cut(s)	29, 63, 97, 181
NmeAIII	GCCGAG	2 cut(s)	110, 400
PaeR7I	CTCGAG	4 cut(s)	22, 56, 90, 174
PciSI	GCTCTTC	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	2 cut(s)	163, 172
PdmI	GAANNNNTTC	1 cut(s)	220
PkrI	GCNGC	4 cut(s)	121, 128, 209, 314
Ppu21I	YACGTR	1 cut(s)	191
PspN4I	GGNNCC	4 cut(s)	29, 63, 97, 181
PspPI	GGNCC	2 cut(s)	234, 264
PspXI	VCTCGAGB	4 cut(s)	22, 56, 90, 174
RsaI	GTAC	2 cut(s)	189, 257
RsaNI	GTAC	2 cut(s)	188, 256
SalI	GTCGAC	1 cut(s)	168
SapI	GCTCTTC	1 cut(s)	211
SatI	GCNGC	4 cut(s)	120, 127, 208, 313
Sau3AI	GATC	3 cut(s)	38, 72, 321
Sau96I	GGNCC	2 cut(s)	234, 264
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	6 cut(s)	175, 193, 223, 252, 261, 363
SfaNI	GCATC	1 cut(s)	100
Sfr274I	CTCGAG	4 cut(s)	22, 56, 90, 174
SinI	GGWCC	2 cut(s)	234, 264
SlaI	CTCGAG	4 cut(s)	22, 56, 90, 174
SmlI	CTYRAG	5 cut(s)	22, 56, 90, 174, 305
SmoI	CTYRAG	5 cut(s)	22, 56, 90, 174, 305
Sse9I	AATT	3 cut(s)	346, 380, 404
SsiI	CCGC	6 cut(s)	126, 134, 262, 291, 313, 372
SspMI	CTAG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	255, 319
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	7 cut(s)	23, 51, 57, 91, 169, 175, 285
TasI	AATT	3 cut(s)	346, 380, 404
TauI	GCSGC	2 cut(s)	129, 315
TscAI	CASTG	5 cut(s)	14, 48, 82, 154, 322
TseI	GCWGC	2 cut(s)	119, 207
TspRI	CASTG	5 cut(s)	14, 48, 82, 154, 322
VpaK11BI	GGWCC	2 cut(s)	234, 264
XapI	RAATTY	2 cut(s)	346, 404
XbaI	TCTAGA	1 cut(s)	224
XhoI	CTCGAG	4 cut(s)	22, 56, 90, 174
XmiI	GTMKAC	1 cut(s)	169
XmnI	GAANNNNTTC	1 cut(s)	220
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.