Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004151

Physical Location & Seq

Genomic Coordinates Forward (+)

3121596 .. 3127378

Gene Structure 5783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G043900.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGCTAGCATTGTCGCAGTTTGCATTCCTGGTTGCTGATGAGTGGACAATTGAAGTAAAAGTTCAGACAATGCAGAATTTGTATAAGCAAAACTCTGATATTGGTTCTGCACATTCGACATTTCCATTCATTGTTGGATCATCATCATGGGAGTATTCTACTGATACACATGTCCAACAGTCTACCTCCAAAAGTTTAATCTTCAGGATGGGCGCACCTCTACAAAATTGTCATAACAGAAAGCAATCTGGAATTCACTTTCAAGATCAAGATTCGTCGTCAACTCAATCAACTGGTCAATCTCATTCTGAAGTGGATAGTATGAAAGAAGGCAACCCATGTGGGGAAGGCATAGTTTCAGCACAATCAGGATATAATGAAAGACAAGGGAAGCCTGTTGGTGGTCACCTGAAATCACTCTCGTCAATGGCAAGTCAGGGCTTTGTCTTCCCGTCACAACTTGATTTTAGCCACCCAATGGGTCACATTCCATTCCACTATGCTGAACCATACTTTGGTAGCTTACTTGCTGCTGCTTGTGGGCCACAAGCTACGATTCATCATCCCCAGGTGATGGGGATTACTCCTGCTAGGGTTCCCTTGCCTCTTGATCTTACAGAAGATGAACCCATTTATGTAAATGCAAAACAGTATCGTGCAATCCTAAGGAGGAGACAATATCGTGCCAAGCTTGAAGCTCAGAACAAACTCGTCAAAATTCGTAAGCCCTATCTTCACGAATCTCGGCATGTTCATGCATTAAAGAGGGCTAGAGGATCTGGTGGCCGCTTTCTCAACATGAAGAAGGTCCAAGATTCCAAGCCTAATACAACAAACAGAGTGGATGTTTCAGGCTCAGCTCAGCTACATTTGACCAGAAATATGTCCGAATCCGAAGTTCTTGAGCCTGACAACTATAGAGATGGTGCTTCCACTACTTCTTGCTCTGAAGTCACAAGCACTTCCAACAGTGATAATATCTTTCCACGGCAAGATTTCAGGTTCTCTGGCTACCCCTCTCACATTGGTGGGACCATGCAAGTTCCCTTTGTTGATGTGCGTGGTGGTGGGAACCAGCACCATATTTCCCTCCTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030522 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0045892 GO:0045934 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0104004 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

367

Amino Acids

40.62

Weight (kDa)

8.94

Isoelectric Point (pI)

50.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17590 AT1G17590 AT1G17590 AT1G17590 AT1G72830 AT1G72830 AT1G72830
fragaria_vesca	FvH4_6g34360 FvH4_6g34360 FvH4_6g34360
malus_domestica	MD09G1186200.v1.1
prunus_persica	Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1
pyrus_communis	pycom09g10340
rosa_chinensis	RchiOBHm_Chr2g0144701
rosa_laevigata	RLG00000020102
rosa_multiflora	Rmu_co8510597.1_g000001 Rmu_sc0000227.1_g000003 Rmu_sc0037791.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101060
rosa_rugosa	Rorug02G0388800 Rorug02G0388900 Rorug02G0389000
rosa_samantha	Rh2AG440800 Rh2BG451200 Rh2CG428000 Rh2DG461200
rosa_wichuraiana	Rw2G036060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	478, 515, 574
AccI	GTMKAC	1 cut(s)	182
AciI	CCGC	1 cut(s)	787
AclWI	GGATC	2 cut(s)	145, 784
AcoI	YGGCCR	1 cut(s)	784
AcsI	RAATTY	3 cut(s)	76, 252, 717
AcuI	CTGAAG	3 cut(s)	187, 330, 969
AfiI	CCNNNNNNNGG	6 cut(s)	343, 401, 478, 515, 574, 1095
AflIII	ACRYGT	1 cut(s)	169
AgsI	TTSAA	3 cut(s)	53, 263, 695
AjnI	CCWGG	2 cut(s)	27, 567
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AleI	CACNNNNGTG	1 cut(s)	1026
AluBI	AGCT	6 cut(s)	522, 551, 691, 698, 860, 865
AluI	AGCT	6 cut(s)	522, 551, 691, 698, 860, 865
Alw26I	GTCTC	1 cut(s)	667
AlwI	GGATC	2 cut(s)	145, 784
AoxI	GGCC	2 cut(s)	542, 784
ApeKI	GCWGC	2 cut(s)	530, 533
ApoI	RAATTY	3 cut(s)	76, 252, 717
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	3 cut(s)	542, 808, 1032
AsuHPI	GGTGA	2 cut(s)	398, 583
AsuNHI	GCTAGC	1 cut(s)	4
AvaII	GGWCC	2 cut(s)	808, 1032
AxyI	CCTNAGG	1 cut(s)	665
BaeI	ACNNNNGTAYC	2 cut(s)	156, 189
BbsI	GAAGAC	1 cut(s)	439
BbvI	GCAGC	2 cut(s)	517, 520
BccI	CCATC	3 cut(s)	202, 568, 917
BceAI	ACGGC	1 cut(s)	1004
BciT130I	CCWGG	2 cut(s)	29, 569
BcoDI	GTCTC	1 cut(s)	667
BfaI	CTAG	3 cut(s)	5, 591, 771
BfmI	CTRYAG	1 cut(s)	916
BisI	GCNGC	3 cut(s)	531, 534, 787
BlpI	GCTNAGC	2 cut(s)	856, 861
BlsI	GCNGC	3 cut(s)	532, 535, 788
Bme1390I	CCNGG	2 cut(s)	29, 569
Bme18I	GGWCC	2 cut(s)	808, 1032
BmgT120I	GGNCC	3 cut(s)	542, 808, 1032
BmiI	GGNNCC	3 cut(s)	597, 1033, 1073
BmrFI	CCNGG	2 cut(s)	29, 569
BmtI	GCTAGC	1 cut(s)	8
BpiI	GAAGAC	1 cut(s)	439
Bpu1102I	GCTNAGC	2 cut(s)	856, 861
BpuEI	CTTGAG	1 cut(s)	923
BsaBI	GATNNNNATC	1 cut(s)	142
BsaJI	CCNNGG	2 cut(s)	567, 986
BsaWI	WCCGGW	1 cut(s)	1095
Bsc4I	CCNNNNNNNGG	6 cut(s)	343, 401, 478, 515, 574, 1095
Bse1I	ACTGG	1 cut(s)	298
Bse21I	CCTNAGG	1 cut(s)	665
Bse8I	GATNNNNATC	1 cut(s)	142
BseBI	CCWGG	2 cut(s)	29, 569
BseDI	CCNNGG	2 cut(s)	567, 986
BseGI	GGATG	3 cut(s)	213, 562, 850
BseJI	GATNNNNATC	1 cut(s)	142
BseLI	CCNNNNNNNGG	6 cut(s)	343, 401, 478, 515, 574, 1095
BseMII	CTCAG	3 cut(s)	713, 870, 875
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	2 cut(s)	685, 1082
BseXI	GCAGC	2 cut(s)	517, 520
BsgI	GTGCAG	1 cut(s)	93
BshFI	GGCC	2 cut(s)	544, 786
BsiSI	CCGG	1 cut(s)	1096
BslFI	GGGAC	1 cut(s)	1045
BslI	CCNNNNNNNGG	6 cut(s)	343, 401, 478, 515, 574, 1095
BsmAI	GTCTC	1 cut(s)	667
BsmFI	GGGAC	1 cut(s)	1045
BsmI	GAATGC	1 cut(s)	23
BsnI	GGCC	2 cut(s)	544, 786
Bsp143I	GATC	4 cut(s)	137, 265, 610, 776
Bsp1720I	GCTNAGC	2 cut(s)	856, 861
BspACI	CCGC	1 cut(s)	787
BspANI	GGCC	2 cut(s)	544, 786
BspCNI	CTCAG	3 cut(s)	712, 869, 874
BspLI	GGNNCC	3 cut(s)	597, 1033, 1073
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	2 cut(s)	145, 784
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	2 cut(s)	567, 986
BssMI	GATC	4 cut(s)	137, 265, 610, 776
Bst2UI	CCWGG	2 cut(s)	29, 569
Bst4CI	ACNGT	3 cut(s)	180, 651, 971
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	4 cut(s)	665, 699, 856, 861
BstDSI	CCRYGG	1 cut(s)	986
BstEII	GGTNACC	1 cut(s)	404
BstF5I	GGATG	3 cut(s)	213, 562, 850
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	4 cut(s)	140, 268, 613, 779
BstMAI	GTCTC	1 cut(s)	667
BstMBI	GATC	4 cut(s)	137, 265, 610, 776
BstNI	CCWGG	2 cut(s)	29, 569
BstNSI	RCATGY	2 cut(s)	173, 752
BstPI	GGTNACC	1 cut(s)	404
BstSCI	CCNGG	2 cut(s)	27, 567
BstSFI	CTRYAG	1 cut(s)	916
BstV1I	GCAGC	2 cut(s)	517, 520
BstV2I	GAAGAC	1 cut(s)	439
BstX2I	RGATCY	1 cut(s)	776
BstYI	RGATCY	1 cut(s)	776
Bsu36I	CCTNAGG	1 cut(s)	665
BsuRI	GGCC	2 cut(s)	544, 786
BtgI	CCRYGG	1 cut(s)	986
BtsCI	GGATG	3 cut(s)	213, 562, 850
BtsIMutI	CAGTG	1 cut(s)	976
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	215
Cfr13I	GGNCC	3 cut(s)	542, 808, 1032
CspCI	CAANNNNNGTGG	4 cut(s)	322, 357, 822, 857
CviAII	CATG	7 cut(s)	147, 170, 339, 749, 755, 799, 1036
DdeI	CTNAG	4 cut(s)	665, 699, 856, 861
DpnI	GATC	4 cut(s)	139, 267, 612, 778
DpnII	GATC	4 cut(s)	137, 265, 610, 776
EaeI	YGGCCR	1 cut(s)	784
Eco47I	GGWCC	2 cut(s)	808, 1032
Eco57I	CTGAAG	3 cut(s)	187, 330, 969
Eco81I	CCTNAGG	1 cut(s)	665
Eco91I	GGTNACC	1 cut(s)	404
EcoO65I	GGTNACC	1 cut(s)	404
EcoRI	GAATTC	1 cut(s)	252
EcoRII	CCWGG	2 cut(s)	27, 567
EcoT22I	ATGCAT	1 cut(s)	760
FaeI	CATG	7 cut(s)	150, 173, 342, 752, 758, 802, 1039
FaqI	GGGAC	1 cut(s)	1045
FatI	CATG	7 cut(s)	146, 169, 338, 748, 754, 798, 1035
FblI	GTMKAC	1 cut(s)	182
Fnu4HI	GCNGC	3 cut(s)	531, 534, 787
FokI	GGATG	3 cut(s)	220, 549, 857
Fsp4HI	GCNGC	3 cut(s)	531, 534, 787
FspBI	CTAG	3 cut(s)	5, 591, 771
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	3 cut(s)	531, 534, 787
HaeIII	GGCC	2 cut(s)	544, 786
HapII	CCGG	1 cut(s)	1096
HhaI	GCGC	1 cut(s)	215
Hin1II	CATG	7 cut(s)	150, 173, 342, 752, 758, 802, 1039
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HindIII	AAGCTT	1 cut(s)	689
HinfI	GANTC	5 cut(s)	272, 556, 740, 815, 890
HpaII	CCGG	1 cut(s)	1096
HphI	GGTGA	2 cut(s)	398, 583
Hpy166II	GTNNAC	3 cut(s)	45, 183, 282
Hpy188I	TCNGA	7 cut(s)	66, 97, 310, 702, 889, 895, 949
Hpy188III	TCNNGA	8 cut(s)	205, 249, 263, 269, 369, 608, 737, 902
Hpy8I	GTNNAC	3 cut(s)	45, 183, 282
Hpy99I	CGWCG	1 cut(s)	280
HpyAV	CCTTC	3 cut(s)	323, 341, 799
HpyCH4III	ACNGT	3 cut(s)	180, 651, 971
HpyCH4V	TGCA	7 cut(s)	23, 73, 110, 644, 659, 758, 1039
HpyF3I	CTNAG	4 cut(s)	665, 699, 856, 861
Hsp92II	CATG	7 cut(s)	150, 173, 342, 752, 758, 802, 1039
HspAI	GCGC	1 cut(s)	213
Kzo9I	GATC	4 cut(s)	137, 265, 610, 776
Lsp1109I	GCAGC	2 cut(s)	517, 520
MaeI	CTAG	3 cut(s)	5, 591, 771
MaeIII	GTNAC	4 cut(s)	404, 453, 482, 952
MalI	GATC	4 cut(s)	139, 267, 612, 778
MboI	GATC	4 cut(s)	137, 265, 610, 776
MboII	GAAGA	5 cut(s)	193, 439, 632, 725, 814
MfeI	CAATTG	1 cut(s)	48
MflI	RGATCY	1 cut(s)	776
MluCI	AATT	5 cut(s)	48, 76, 226, 252, 717
MmeI	TCCRAC	3 cut(s)	115, 199, 990
MnlI	CCTC	8 cut(s)	196, 228, 615, 663, 759, 767, 1027, 1100
Mph1103I	ATGCAT	1 cut(s)	760
MseI	TTAA	2 cut(s)	197, 761
MslI	CAYNNNNRTG	3 cut(s)	145, 753, 1026
MspI	CCGG	1 cut(s)	1096
MspR9I	CCNGG	2 cut(s)	29, 569
MunI	CAATTG	1 cut(s)	48
Mva1269I	GAATGC	1 cut(s)	23
MvaI	CCWGG	2 cut(s)	29, 569
NdeII	GATC	4 cut(s)	137, 265, 610, 776
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	7 cut(s)	150, 173, 342, 752, 758, 802, 1039
NlaIV	GGNNCC	3 cut(s)	597, 1033, 1073
NmeAIII	GCCGAG	1 cut(s)	724
NmuCI	GTSAC	4 cut(s)	404, 453, 482, 952
NsiI	ATGCAT	1 cut(s)	760
NspI	RCATGY	2 cut(s)	173, 752
OliI	CACNNNNGTG	1 cut(s)	1026
PciI	ACATGT	1 cut(s)	169
PctI	GAATGC	1 cut(s)	23
PfeI	GAWTC	5 cut(s)	272, 556, 740, 815, 890
PflMI	CCANNNNNTGG	3 cut(s)	478, 515, 574
PkrI	GCNGC	3 cut(s)	532, 535, 788
PscI	ACATGT	1 cut(s)	169
Psp6I	CCWGG	2 cut(s)	27, 567
PspEI	GGTNACC	1 cut(s)	404
PspGI	CCWGG	2 cut(s)	27, 567
PspN4I	GGNNCC	3 cut(s)	597, 1033, 1073
PspPI	GGNCC	3 cut(s)	542, 808, 1032
PsuI	RGATCY	1 cut(s)	776
RseI	CAYNNNNRTG	3 cut(s)	145, 753, 1026
SaqAI	TTAA	2 cut(s)	197, 761
SatI	GCNGC	3 cut(s)	531, 534, 787
Sau3AI	GATC	4 cut(s)	137, 265, 610, 776
Sau96I	GGNCC	3 cut(s)	542, 808, 1032
ScrFI	CCNGG	2 cut(s)	29, 569
SfcI	CTRYAG	1 cut(s)	916
SinI	GGWCC	2 cut(s)	808, 1032
SmiMI	CAYNNNNRTG	3 cut(s)	145, 753, 1026
SmlI	CTYRAG	1 cut(s)	902
SmoI	CTYRAG	1 cut(s)	902
Sse9I	AATT	5 cut(s)	48, 76, 226, 252, 717
SsiI	CCGC	1 cut(s)	787
SspMI	CTAG	3 cut(s)	5, 591, 771
StyD4I	CCNGG	2 cut(s)	27, 567
TaaI	ACNGT	3 cut(s)	180, 651, 971
TaqI	TCGA	1 cut(s)	116
TasI	AATT	5 cut(s)	48, 76, 226, 252, 717
TauI	GCSGC	1 cut(s)	789
TfiI	GAWTC	5 cut(s)	272, 556, 740, 815, 890
Tru1I	TTAA	2 cut(s)	197, 761
Tru9I	TTAA	2 cut(s)	197, 761
TscAI	CASTG	1 cut(s)	976
TseFI	GTSAC	4 cut(s)	404, 453, 482, 952
TseI	GCWGC	2 cut(s)	530, 533
Tsp45I	GTSAC	4 cut(s)	404, 453, 482, 952
TspDTI	ATGAA	7 cut(s)	118, 338, 393, 548, 639, 743, 815
TspRI	CASTG	1 cut(s)	976
Van91I	CCANNNNNTGG	3 cut(s)	478, 515, 574
VpaK11BI	GGWCC	2 cut(s)	808, 1032
XapI	RAATTY	3 cut(s)	76, 252, 717
XceI	RCATGY	2 cut(s)	173, 752
XmiI	GTMKAC	1 cut(s)	182
XspI	CTAG	3 cut(s)	5, 591, 771
Zsp2I	ATGCAT	1 cut(s)	760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.