Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004151

Physical Location & Seq

Genomic Coordinates Reverse (-)

58145765 .. 58150958

Gene Structure 5194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG428000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGGTGTGCCACTACAACATTGTCGTAACACCATGAAATCTGGAATACACCTTCAAAATCAGGATTCATCCTCAACTCAATCCACTGGTCAATCGCGCTCTGAATTTGCTAGTTTGAAAGAAGGTAACCCTTGTGGGCAAGGCGTAGTTTCAGGATATAATGAAACACAGGGGAGGCCTGTTGGGGGCCACAAGAAATCTCTCTCCTCAATCACAAGTCAGGAACTTGTCTTCCCTTCACAACTTGATTTTAGCCATTCCATGGCTCATGTTCCATTCCACTGTGCTGAACCATACTTTGGTGGCTTACTTGCTGCTTATGGGCCACAAGCTATGTTTCATCATCCCCAGATGATGGGGATTTCTCCTGGTCGGGTTCCCTTGCCTCTTGATCTCACAGAAAATGAACCGATTTATGTAAACGCAAAACAGTACCGCGCAATTCTGAGGCGGAGGCAATTTCGTGCCAAGCTTGAAGCTCAAAACAAGCTTACCAAAGTTCGGAAGCCGTATCTTCATGAATCTCGACATGTTCACGCATTAAAGAGGGCTAGGGGATCTGGTGGGCGCTTTCTCAACATGAAAAAGCTCCAAGATTCCAAGCCTAACTTCACAAGCCATAGAGTGGATGCTTCAGGTTCTGCTCAGCTACATTTGACCGGAAATATGTCAGAATCTGATGTTCATGAGGCTGACAACTTTCGAGATGGTGCTTCCACAACCTCTTGCTCCGACGTCACTAGCACCTCTAACAGTGACGACATCTTTCCACGGCAAGATTTCAGGTTCTCTGGCTACCCCTCTCACATTGGCGGGATGCTGCAAGTTTCGCTAGTTGATGTGCGTGGTGGCGGAAACCAGCACCATGTTTCCATCTTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030522 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0045892 GO:0045934 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0104004 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

294

Amino Acids

32.44

Weight (kDa)

9.51

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	136 - 191	2e-26	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17590 AT1G17590 AT1G17590 AT1G17590 AT1G72830 AT1G72830 AT1G72830
fragaria_vesca	FvH4_6g34360 FvH4_6g34360 FvH4_6g34360
malus_domestica	MD09G1186200.v1.1
prunus_persica	Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1
pyrus_communis	pycom09g10340
rosa_chinensis	RchiOBHm_Chr2g0144701
rosa_laevigata	RLG00000020102
rosa_multiflora	Rmu_co8510597.1_g000001 Rmu_sc0000227.1_g000003 Rmu_sc0037791.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101060
rosa_rugosa	Rorug02G0388800 Rorug02G0388900 Rorug02G0389000
rosa_samantha	Rh2AG440800 Rh2BG451200 Rh2CG428000 Rh2DG461200
rosa_wichuraiana	Rw2G036060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	738
AccB7I	CCANNNNNTGG	4 cut(s)	262, 299, 355, 625
AccII	CGCG	2 cut(s)	97, 438
AciI	CCGC	4 cut(s)	436, 451, 813, 852
AclWI	GGATC	1 cut(s)	565
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	1 cut(s)	618
AcyI	GRCGYC	1 cut(s)	735
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	7 cut(s)	185, 262, 299, 355, 501, 625, 879
AflIII	ACRYGT	1 cut(s)	529
AgsI	TTSAA	3 cut(s)	56, 118, 476
AjnI	CCWGG	1 cut(s)	367
AjuI	GAANNNNNNNTTGG	4 cut(s)	282, 314, 593, 625
AloI	GAACNNNNNNTCC	2 cut(s)	216, 248
AluBI	AGCT	6 cut(s)	332, 472, 479, 490, 589, 649
AluI	AGCT	6 cut(s)	332, 472, 479, 490, 589, 649
AlwI	GGATC	1 cut(s)	565
AlwNI	CAGNNNCTG	2 cut(s)	641, 677
AoxI	GGCC	3 cut(s)	176, 187, 323
ApeKI	GCWGC	2 cut(s)	314, 820
ApoI	RAATTY	1 cut(s)	104
AspLEI	GCGC	3 cut(s)	99, 440, 570
AspS9I	GGNCC	2 cut(s)	187, 323
BbsI	GAAGAC	1 cut(s)	223
BbvI	GCAGC	2 cut(s)	301, 807
BccI	CCATC	3 cut(s)	349, 701, 881
BceAI	ACGGC	2 cut(s)	493, 788
BciT130I	CCWGG	1 cut(s)	369
BfaI	CTAG	4 cut(s)	111, 552, 741, 833
BfoI	RGCGCY	1 cut(s)	571
BisI	GCNGC	2 cut(s)	315, 821
BlpI	GCTNAGC	1 cut(s)	645
BlsI	GCNGC	2 cut(s)	316, 822
Bme1390I	CCNGG	1 cut(s)	369
BmgT120I	GGNCC	2 cut(s)	187, 323
BmiI	GGNNCC	2 cut(s)	188, 378
BmrFI	CCNGG	1 cut(s)	369
BmsI	GCATC	2 cut(s)	619, 807
BpiI	GAAGAC	1 cut(s)	223
Bpu1102I	GCTNAGC	1 cut(s)	645
BsaHI	GRCGYC	1 cut(s)	735
BsaJI	CCNNGG	2 cut(s)	261, 770
BsaWI	WCCGGW	2 cut(s)	659, 879
Bsc4I	CCNNNNNNNGG	7 cut(s)	185, 262, 299, 355, 501, 625, 879
Bse1I	ACTGG	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	369
BseDI	CCNNGG	2 cut(s)	261, 770
BseGI	GGATG	4 cut(s)	68, 343, 634, 822
BseLI	CCNNNNNNNGG	7 cut(s)	185, 262, 299, 355, 501, 625, 879
BseMII	CTCAG	2 cut(s)	437, 659
BseNI	ACTGG	1 cut(s)	91
BseRI	GAGGAG	1 cut(s)	196
BseXI	GCAGC	2 cut(s)	301, 807
Bsh1236I	CGCG	2 cut(s)	97, 438
BshFI	GGCC	3 cut(s)	178, 189, 325
BsiSI	CCGG	2 cut(s)	660, 880
BslI	CCNNNNNNNGG	7 cut(s)	185, 262, 299, 355, 501, 625, 879
BsnI	GGCC	3 cut(s)	178, 189, 325
Bsp143I	GATC	2 cut(s)	391, 557
Bsp1720I	GCTNAGC	1 cut(s)	645
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	4 cut(s)	436, 451, 813, 852
BspANI	GGCC	3 cut(s)	178, 189, 325
BspCNI	CTCAG	2 cut(s)	438, 658
BspFNI	CGCG	2 cut(s)	97, 438
BspHI	TCATGA	2 cut(s)	517, 685
BspLI	GGNNCC	2 cut(s)	188, 378
BspPI	GGATC	1 cut(s)	565
BsrI	ACTGG	1 cut(s)	91
BssECI	CCNNGG	2 cut(s)	261, 770
BssMI	GATC	2 cut(s)	391, 557
BssNI	GRCGYC	1 cut(s)	735
BssT1I	CCWWGG	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	3 cut(s)	284, 432, 755
BstACI	GRCGYC	1 cut(s)	735
BstDEI	CTNAG	2 cut(s)	446, 645
BstDSI	CCRYGG	2 cut(s)	261, 770
BstEII	GGTNACC	1 cut(s)	125
BstF5I	GGATG	4 cut(s)	68, 343, 634, 822
BstFNI	CGCG	2 cut(s)	97, 438
BstH2I	RGCGCY	1 cut(s)	571
BstHHI	GCGC	3 cut(s)	99, 440, 570
BstKTI	GATC	2 cut(s)	394, 560
BstMBI	GATC	2 cut(s)	391, 557
BstMWI	GCNNNNNNNGC	1 cut(s)	829
BstNI	CCWGG	1 cut(s)	369
BstNSI	RCATGY	1 cut(s)	533
BstPI	GGTNACC	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	367
BstUI	CGCG	2 cut(s)	97, 438
BstV1I	GCAGC	2 cut(s)	301, 807
BstV2I	GAAGAC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	557
BstYI	RGATCY	1 cut(s)	557
BsuRI	GGCC	3 cut(s)	178, 189, 325
BtgI	CCRYGG	2 cut(s)	261, 770
BtsCI	GGATG	4 cut(s)	68, 343, 634, 822
BtsIMutI	CAGTG	3 cut(s)	84, 280, 760
CaiI	CAGNNNCTG	2 cut(s)	641, 677
CciI	TCATGA	2 cut(s)	517, 685
CfoI	GCGC	3 cut(s)	99, 440, 570
Cfr13I	GGNCC	2 cut(s)	187, 323
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	8 cut(s)	34, 262, 269, 518, 530, 580, 686, 866
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	2 cut(s)	446, 645
DpnI	GATC	2 cut(s)	393, 559
DpnII	GATC	2 cut(s)	391, 557
EciI	GGCGGA	2 cut(s)	466, 867
Eco130I	CCWWGG	1 cut(s)	261
Eco147I	AGGCCT	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	618
Eco91I	GGTNACC	1 cut(s)	125
EcoO65I	GGTNACC	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	367
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	8 cut(s)	37, 265, 272, 521, 533, 583, 689, 869
FalI	AAGNNNNNCTT	2 cut(s)	593, 625
FatI	CATG	8 cut(s)	33, 261, 268, 517, 529, 579, 685, 865
FauI	CCCGC	1 cut(s)	806
Fnu4HI	GCNGC	2 cut(s)	315, 821
FokI	GGATG	4 cut(s)	55, 330, 641, 829
Fsp4HI	GCNGC	2 cut(s)	315, 821
FspBI	CTAG	4 cut(s)	111, 552, 741, 833
GlaI	GCGC	3 cut(s)	98, 439, 569
GluI	GCNGC	2 cut(s)	315, 821
HaeII	RGCGCY	1 cut(s)	571
HaeIII	GGCC	3 cut(s)	178, 189, 325
HapII	CCGG	2 cut(s)	660, 880
HhaI	GCGC	3 cut(s)	99, 440, 570
Hin1I	GRCGYC	1 cut(s)	735
Hin1II	CATG	8 cut(s)	37, 265, 272, 521, 533, 583, 689, 869
Hin6I	GCGC	3 cut(s)	97, 438, 568
HinP1I	GCGC	3 cut(s)	97, 438, 568
HindIII	AAGCTT	2 cut(s)	470, 488
HinfI	GANTC	4 cut(s)	65, 521, 596, 674
HpaII	CCGG	2 cut(s)	660, 880
Hpy166II	GTNNAC	2 cut(s)	421, 535
Hpy188I	TCNGA	6 cut(s)	103, 447, 504, 673, 679, 733
Hpy188III	TCNNGA	9 cut(s)	42, 62, 153, 221, 389, 518, 525, 686, 704
Hpy8I	GTNNAC	2 cut(s)	421, 535
Hpy99I	CGWCG	1 cut(s)	737
HpyAV	CCTTC	3 cut(s)	62, 116, 246
HpyCH4III	ACNGT	3 cut(s)	284, 432, 755
HpyCH4IV	ACGT	1 cut(s)	735
HpyCH4V	TGCA	1 cut(s)	823
HpyF10VI	GCNNNNNNNGC	1 cut(s)	829
HpyF3I	CTNAG	2 cut(s)	446, 645
HpySE526I	ACGT	1 cut(s)	735
Hsp92I	GRCGYC	1 cut(s)	735
Hsp92II	CATG	8 cut(s)	37, 265, 272, 521, 533, 583, 689, 869
HspAI	GCGC	3 cut(s)	97, 438, 568
Kzo9I	GATC	2 cut(s)	391, 557
LmnI	GCTCC	2 cut(s)	594, 734
Lsp1109I	GCAGC	2 cut(s)	301, 807
LweI	GCATC	2 cut(s)	619, 807
MaeI	CTAG	4 cut(s)	111, 552, 741, 833
MaeII	ACGT	1 cut(s)	735
MaeIII	GTNAC	4 cut(s)	26, 125, 736, 755
MalI	GATC	2 cut(s)	393, 559
MboI	GATC	2 cut(s)	391, 557
MboII	GAAGA	3 cut(s)	223, 506, 868
MflI	RGATCY	1 cut(s)	557
MluCI	AATT	3 cut(s)	104, 441, 458
MmeI	TCCRAC	1 cut(s)	756
MseI	TTAA	1 cut(s)	542
MspI	CCGG	2 cut(s)	660, 880
MspR9I	CCNGG	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	369
MvnI	CGCG	2 cut(s)	97, 438
MwoI	GCNNNNNNNGC	1 cut(s)	829
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	2 cut(s)	391, 557
NlaIII	CATG	8 cut(s)	37, 265, 272, 521, 533, 583, 689, 869
NlaIV	GGNNCC	2 cut(s)	188, 378
NmuCI	GTSAC	2 cut(s)	736, 755
NspI	RCATGY	1 cut(s)	533
PagI	TCATGA	2 cut(s)	517, 685
PceI	AGGCCT	1 cut(s)	178
PciI	ACATGT	1 cut(s)	529
PfeI	GAWTC	4 cut(s)	65, 521, 596, 674
PflMI	CCANNNNNTGG	4 cut(s)	262, 299, 355, 625
PkrI	GCNGC	2 cut(s)	316, 822
PscI	ACATGT	1 cut(s)	529
Psp6I	CCWGG	1 cut(s)	367
PspEI	GGTNACC	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	2 cut(s)	188, 378
PspPI	GGNCC	2 cut(s)	187, 323
PstNI	CAGNNNCTG	2 cut(s)	641, 677
PsuI	RGATCY	1 cut(s)	557
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
SaqAI	TTAA	1 cut(s)	542
SatI	GCNGC	2 cut(s)	315, 821
Sau3AI	GATC	2 cut(s)	391, 557
Sau96I	GGNCC	2 cut(s)	187, 323
ScrFI	CCNGG	1 cut(s)	369
SfaNI	GCATC	2 cut(s)	619, 807
Sse9I	AATT	3 cut(s)	104, 441, 458
SseBI	AGGCCT	1 cut(s)	178
SsiI	CCGC	4 cut(s)	436, 451, 813, 852
SspMI	CTAG	4 cut(s)	111, 552, 741, 833
StuI	AGGCCT	1 cut(s)	178
StyD4I	CCNGG	1 cut(s)	367
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	3 cut(s)	284, 432, 755
TaiI	ACGT	1 cut(s)	738
TaqI	TCGA	2 cut(s)	526, 703
TasI	AATT	3 cut(s)	104, 441, 458
TfiI	GAWTC	4 cut(s)	65, 521, 596, 674
Tru1I	TTAA	1 cut(s)	542
Tru9I	TTAA	1 cut(s)	542
TscAI	CASTG	3 cut(s)	91, 287, 760
TseFI	GTSAC	2 cut(s)	736, 755
TseI	GCWGC	2 cut(s)	314, 820
Tsp45I	GTSAC	2 cut(s)	736, 755
TspDTI	ATGAA	9 cut(s)	50, 57, 177, 329, 420, 506, 534, 596, 674
TspRI	CASTG	3 cut(s)	91, 287, 760
Van91I	CCANNNNNTGG	4 cut(s)	262, 299, 355, 625
XapI	RAATTY	1 cut(s)	104
XceI	RCATGY	1 cut(s)	533
XspI	CTAG	4 cut(s)	111, 552, 741, 833
ZraI	GACGTC	1 cut(s)	736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.