Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004151

Physical Location & Seq

Genomic Coordinates Reverse (-)

27405145 .. 27408221

Gene Structure 3077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G72830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGATGCATCAGATGTTGAATAAGAAAGATTCAGCTACTCATTCCACTTTGCCATACCTTAATACTAGCATCTCTTGGGGAGTGGTTCCAACTGATTCCGTTGCTAATCGTCGCGGTTCTGCTGAATCACTAAGCTTGAAGGTTGATTCAAGACCTGGGCATATACAAACTACAAAGCAAATCAGTTTTCAGGACCAAGATTCATCTTCAACACAGTCCACTGGTCAATCTTATACTGAAGTTGCTAGTAGTGGTGATGATAATCCTTCCAGACAAATCTCCTTTTCGGCTAAATCAGGATCTGAAATAACTCAACGGAAGGGGTTTGCAAGTAATCCTAAACAAGGCTCGATGACTGGATTTCCGAATATTCACTTTGCTCCTGCACAGGCTAATTTCTCATTTCACTATGCTGATCCACATTATGGTGGTTTATTAGCTGCAACTTACCTACCACAGGCACCAACATGCAATCCTCAAATGGTGAGTATGATTCCTGGTCGTGTTCCTTTACCAGCAGAGCTCACAGAAACTGATCCAGTCTTTGTCAATGCGAAGCAATACCACGCAATTATGAGGAGGAGACAGCAACGTGCTAAGCTTGAGGCTCAAAACAAACTAATCAGAGCCCGTAAGCCCTATCTTCATGAGTCTCGACATGTTCATGCTCTTAAAAGGCCAAGAGGATCTGGTGGAAGATTCCTAAACACCAAAAAACTTCTTCAAGAATCCGAACAGGCTGCTGCTAGAGAACAAGAACAGGACAAGTTAGGCCAACAGGTAAACAGAAAGACCAACATGTCTAGATTCGAAGCTCATATGCTGCAGAACAACAAAGACCGCAGCTCAACCACTTCTGGCTCAGACATCACCTCTGTTTCCGACGGTGCTGATATCTTTGGACACACTGAATTCCAGTTTTCAGGTTTCCCAACTCCGATAAACCGAGCCATGCTTGTTCATGGTCAGTCTAATGACATGCATGGAGGTGGAGACATGCACCATTTCTCTGTCCATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030522 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0045892 GO:0045934 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0104004 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

340

Amino Acids

37.62

Weight (kDa)

9.62

Isoelectric Point (pI)

61.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	180 - 234	3.8e-27	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17590 AT1G17590 AT1G17590 AT1G17590 AT1G72830 AT1G72830 AT1G72830
fragaria_vesca	FvH4_6g34360 FvH4_6g34360 FvH4_6g34360
malus_domestica	MD09G1186200.v1.1
prunus_persica	Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1
pyrus_communis	pycom09g10340
rosa_chinensis	RchiOBHm_Chr2g0144701
rosa_laevigata	RLG00000020102
rosa_multiflora	Rmu_co8510597.1_g000001 Rmu_sc0000227.1_g000003 Rmu_sc0037791.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101060
rosa_rugosa	Rorug02G0388800 Rorug02G0388900 Rorug02G0389000
rosa_samantha	Rh2AG440800 Rh2BG451200 Rh2CG428000 Rh2DG461200
rosa_wichuraiana	Rw2G036060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	799
AccB1I	GGYRCC	1 cut(s)	460
AccB7I	CCANNNNNTGG	1 cut(s)	425
AccII	CGCG	1 cut(s)	114
AciI	CCGC	2 cut(s)	114, 841
AclWI	GGATC	4 cut(s)	307, 410, 530, 694
AcsI	RAATTY	1 cut(s)	911
AcuI	CTGAAG	1 cut(s)	258
AfiI	CCNNNNNNNGG	3 cut(s)	344, 425, 457
AflIII	ACRYGT	2 cut(s)	658, 798
AgsI	TTSAA	5 cut(s)	19, 139, 150, 210, 725
AjnI	CCWGG	2 cut(s)	154, 496
AluBI	AGCT	7 cut(s)	35, 135, 440, 523, 601, 815, 846
AluI	AGCT	7 cut(s)	35, 135, 440, 523, 601, 815, 846
Alw21I	GWGCWC	1 cut(s)	525
Alw26I	GTCTC	3 cut(s)	577, 657, 987
AlwI	GGATC	4 cut(s)	307, 410, 530, 694
AlwNI	CAGNNNCTG	2 cut(s)	302, 533
AoxI	GGCC	2 cut(s)	677, 772
ApeKI	GCWGC	5 cut(s)	440, 740, 743, 823, 843
ApoI	RAATTY	1 cut(s)	911
AspS9I	GGNCC	1 cut(s)	193
AsuHPI	GGTGA	3 cut(s)	266, 496, 862
AsuII	TTCGAA	1 cut(s)	810
AvaII	GGWCC	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	460
BanII	GRGCYC	2 cut(s)	525, 631
Bbv12I	GWGCWC	1 cut(s)	525
BbvI	GCAGC	5 cut(s)	427, 727, 730, 810, 855
BcgI	CGANNNNNNTGC	2 cut(s)	722, 756
BciT130I	CCWGG	2 cut(s)	156, 498
BcoDI	GTCTC	3 cut(s)	577, 657, 987
BfaI	CTAG	4 cut(s)	66, 246, 747, 804
BfmI	CTRYAG	1 cut(s)	824
BisI	GCNGC	5 cut(s)	441, 741, 744, 824, 844
BlpI	GCTNAGC	1 cut(s)	597
BlsI	GCNGC	5 cut(s)	442, 742, 745, 825, 845
Bme1390I	CCNGG	2 cut(s)	156, 498
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	2 cut(s)	87, 462
BmrFI	CCNGG	2 cut(s)	156, 498
BmsI	GCATC	2 cut(s)	16, 78
Bpu1102I	GCTNAGC	1 cut(s)	597
Bpu14I	TTCGAA	1 cut(s)	810
BpuEI	CTTGAG	1 cut(s)	623
BsaBI	GATNNNNATC	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	3 cut(s)	344, 425, 457
Bse1I	ACTGG	4 cut(s)	226, 361, 539, 916
Bse8I	GATNNNNATC	1 cut(s)	261
BseBI	CCWGG	2 cut(s)	156, 498
BseDI	CCNNGG	1 cut(s)	155
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	3 cut(s)	344, 425, 457
BseMII	CTCAG	1 cut(s)	876
BseNI	ACTGG	4 cut(s)	226, 361, 539, 916
BseRI	GAGGAG	2 cut(s)	592, 595
BseXI	GCAGC	5 cut(s)	427, 727, 730, 810, 855
BsgI	GTGCAG	1 cut(s)	369
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	2 cut(s)	679, 774
BshNI	GGYRCC	1 cut(s)	460
BsiHKAI	GWGCWC	1 cut(s)	525
BslI	CCNNNNNNNGG	3 cut(s)	344, 425, 457
BsmAI	GTCTC	3 cut(s)	577, 657, 987
BsnI	GGCC	2 cut(s)	679, 774
Bsp119I	TTCGAA	1 cut(s)	810
Bsp1286I	GDGCHC	2 cut(s)	525, 631
Bsp143I	GATC	4 cut(s)	299, 415, 535, 686
Bsp1720I	GCTNAGC	1 cut(s)	597
BspACI	CCGC	2 cut(s)	114, 841
BspANI	GGCC	2 cut(s)	679, 774
BspCNI	CTCAG	1 cut(s)	875
BspFNI	CGCG	1 cut(s)	114
BspHI	TCATGA	1 cut(s)	646
BspLI	GGNNCC	2 cut(s)	87, 462
BspMAI	CTGCAG	1 cut(s)	828
BspPI	GGATC	4 cut(s)	307, 410, 530, 694
BspT104I	TTCGAA	1 cut(s)	810
BspT107I	GGYRCC	1 cut(s)	460
BsrI	ACTGG	4 cut(s)	226, 361, 539, 916
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	4 cut(s)	299, 415, 535, 686
Bst2UI	CCWGG	2 cut(s)	156, 498
Bst4CI	ACNGT	2 cut(s)	216, 887
BstBI	TTCGAA	1 cut(s)	810
BstDEI	CTNAG	3 cut(s)	131, 597, 862
BstENI	CCTNNNNNAGG	2 cut(s)	342, 455
BstFNI	CGCG	1 cut(s)	114
BstKTI	GATC	4 cut(s)	302, 418, 538, 689
BstMAI	GTCTC	3 cut(s)	577, 657, 987
BstMBI	GATC	4 cut(s)	299, 415, 535, 686
BstNI	CCWGG	2 cut(s)	156, 498
BstNSI	RCATGY	5 cut(s)	471, 662, 802, 982, 1000
BstSCI	CCNGG	2 cut(s)	154, 496
BstSFI	CTRYAG	1 cut(s)	824
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	5 cut(s)	427, 727, 730, 810, 855
BstX2I	RGATCY	2 cut(s)	299, 686
BstYI	RGATCY	2 cut(s)	299, 686
BsuRI	GGCC	2 cut(s)	679, 774
BtsIMutI	CAGTG	2 cut(s)	219, 906
CaiI	CAGNNNCTG	2 cut(s)	302, 533
CciI	TCATGA	1 cut(s)	646
Cfr13I	GGNCC	1 cut(s)	193
DdeI	CTNAG	3 cut(s)	131, 597, 862
DpnI	GATC	4 cut(s)	301, 417, 537, 688
DpnII	GATC	4 cut(s)	299, 415, 535, 686
DrdI	GACNNNNNNGTC	1 cut(s)	799
DseDI	GACNNNNNNGTC	1 cut(s)	799
Ecl136II	GAGCTC	1 cut(s)	523
Eco24I	GRGCYC	2 cut(s)	525, 631
Eco32I	GATATC	1 cut(s)	895
Eco47I	GGWCC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	523
Eco57I	CTGAAG	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	523
EcoNI	CCTNNNNNAGG	2 cut(s)	342, 455
EcoRI	GAATTC	1 cut(s)	911
EcoRII	CCWGG	2 cut(s)	154, 496
EcoRV	GATATC	1 cut(s)	895
EcoT22I	ATGCAT	2 cut(s)	9, 984
EcoT38I	GRGCYC	2 cut(s)	525, 631
FauNDI	CATATG	1 cut(s)	819
Fnu4HI	GCNGC	5 cut(s)	441, 741, 744, 824, 844
FriOI	GRGCYC	2 cut(s)	525, 631
Fsp4HI	GCNGC	5 cut(s)	441, 741, 744, 824, 844
FspBI	CTAG	4 cut(s)	66, 246, 747, 804
GluI	GCNGC	5 cut(s)	441, 741, 744, 824, 844
HaeIII	GGCC	2 cut(s)	679, 774
HindIII	AAGCTT	2 cut(s)	133, 599
HphI	GGTGA	3 cut(s)	266, 496, 862
Hpy166II	GTNNAC	2 cut(s)	219, 784
Hpy188I	TCNGA	9 cut(s)	12, 304, 366, 626, 733, 865, 883, 939, 1022
Hpy188III	TCNNGA	8 cut(s)	150, 191, 270, 297, 647, 654, 725, 804
Hpy8I	GTNNAC	2 cut(s)	219, 784
Hpy99I	CGWCG	2 cut(s)	114, 887
HpyAV	CCTTC	3 cut(s)	133, 276, 313
HpyCH4III	ACNGT	2 cut(s)	216, 887
HpyCH4IV	ACGT	1 cut(s)	592
HpyCH4V	TGCA	8 cut(s)	7, 329, 386, 443, 471, 826, 982, 1000
HpyF3I	CTNAG	3 cut(s)	131, 597, 862
HpySE526I	ACGT	1 cut(s)	592
Kzo9I	GATC	4 cut(s)	299, 415, 535, 686
LmnI	GCTCC	1 cut(s)	385
Lsp1109I	GCAGC	5 cut(s)	427, 727, 730, 810, 855
LweI	GCATC	2 cut(s)	16, 78
MaeI	CTAG	4 cut(s)	66, 246, 747, 804
MaeII	ACGT	1 cut(s)	592
MalI	GATC	4 cut(s)	301, 417, 537, 688
MboI	GATC	4 cut(s)	299, 415, 535, 686
MboII	GAAGA	4 cut(s)	198, 635, 708, 713
MflI	RGATCY	2 cut(s)	299, 686
MhlI	GDGCHC	2 cut(s)	525, 631
MluCI	AATT	3 cut(s)	394, 570, 911
MlyI	GAGTC	1 cut(s)	659
MmeI	TCCRAC	2 cut(s)	113, 906
MnlI	CCTC	7 cut(s)	486, 570, 573, 598, 677, 883, 980
Mph1103I	ATGCAT	2 cut(s)	9, 984
MseI	TTAA	2 cut(s)	60, 672
MslI	CAYNNNNRTG	4 cut(s)	426, 466, 663, 987
MspR9I	CCNGG	2 cut(s)	156, 498
MvaI	CCWGG	2 cut(s)	156, 498
MvnI	CGCG	1 cut(s)	114
NdeI	CATATG	1 cut(s)	819
NdeII	GATC	4 cut(s)	299, 415, 535, 686
NlaIV	GGNNCC	2 cut(s)	87, 462
NsiI	ATGCAT	2 cut(s)	9, 984
NspI	RCATGY	5 cut(s)	471, 662, 802, 982, 1000
NspV	TTCGAA	1 cut(s)	810
PagI	TCATGA	1 cut(s)	646
PciI	ACATGT	2 cut(s)	658, 798
PfeI	GAWTC	9 cut(s)	29, 95, 125, 146, 200, 493, 699, 728, 807
PflMI	CCANNNNNTGG	1 cut(s)	425
PkrI	GCNGC	5 cut(s)	442, 742, 745, 825, 845
PleI	GAGTC	1 cut(s)	658
PpsI	GAGTC	1 cut(s)	658
PscI	ACATGT	2 cut(s)	658, 798
Psp124BI	GAGCTC	1 cut(s)	525
Psp6I	CCWGG	2 cut(s)	154, 496
PspGI	CCWGG	2 cut(s)	154, 496
PspN4I	GGNNCC	2 cut(s)	87, 462
PspPI	GGNCC	1 cut(s)	193
PstI	CTGCAG	1 cut(s)	828
PstNI	CAGNNNCTG	2 cut(s)	302, 533
PsuI	RGATCY	2 cut(s)	299, 686
RseI	CAYNNNNRTG	4 cut(s)	426, 466, 663, 987
SacI	GAGCTC	1 cut(s)	525
SaqAI	TTAA	2 cut(s)	60, 672
SatI	GCNGC	5 cut(s)	441, 741, 744, 824, 844
Sau3AI	GATC	4 cut(s)	299, 415, 535, 686
Sau96I	GGNCC	1 cut(s)	193
SchI	GAGTC	1 cut(s)	659
ScrFI	CCNGG	2 cut(s)	156, 498
SduI	GDGCHC	2 cut(s)	525, 631
SfaNI	GCATC	2 cut(s)	16, 78
SfcI	CTRYAG	1 cut(s)	824
SfuI	TTCGAA	1 cut(s)	810
SinI	GGWCC	1 cut(s)	193
SmiMI	CAYNNNNRTG	4 cut(s)	426, 466, 663, 987
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
Sse9I	AATT	3 cut(s)	394, 570, 911
SsiI	CCGC	2 cut(s)	114, 841
SspI	AATATT	1 cut(s)	370
SspMI	CTAG	4 cut(s)	66, 246, 747, 804
SstI	GAGCTC	1 cut(s)	525
StyD4I	CCNGG	2 cut(s)	154, 496
TaaI	ACNGT	2 cut(s)	216, 887
TaiI	ACGT	1 cut(s)	595
TaqI	TCGA	3 cut(s)	350, 655, 810
TasI	AATT	3 cut(s)	394, 570, 911
TfiI	GAWTC	9 cut(s)	29, 95, 125, 146, 200, 493, 699, 728, 807
Tru1I	TTAA	2 cut(s)	60, 672
Tru9I	TTAA	2 cut(s)	60, 672
TscAI	CASTG	2 cut(s)	226, 913
TseI	GCWGC	5 cut(s)	440, 740, 743, 823, 843
TspDTI	ATGAA	4 cut(s)	192, 635, 653, 950
TspGWI	ACGGA	2 cut(s)	88, 331
TspRI	CASTG	2 cut(s)	226, 913
Van91I	CCANNNNNTGG	1 cut(s)	425
VpaK11BI	GGWCC	1 cut(s)	193
XagI	CCTNNNNNAGG	2 cut(s)	342, 455
XapI	RAATTY	1 cut(s)	911
XbaI	TCTAGA	1 cut(s)	803
XceI	RCATGY	5 cut(s)	471, 662, 802, 982, 1000
XspI	CTAG	4 cut(s)	66, 246, 747, 804
Zsp2I	ATGCAT	2 cut(s)	9, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.