Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004151

Physical Location & Seq

Genomic Coordinates Reverse (-)

27117419 .. 27122335

Gene Structure 4917 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g34360.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGGTGTGTCACTACCACATTGTCGTAGAACAAAGAAATCTGGAGAACATGTTCAAGACCAGGATTCATCCTCAACTCAATCTGATGGTCAATCACACTCTGAAATGGCTAGTTTGAAAGAAGGCAACCCTTGTGGGCTAGGCGTGGTTTCAGGATATAATGAAATACAGGGGAGGCTTGTTGGGGGCCACAAGAAATCTCTCTCCTCAATCACAAGTCAAGAATTTGTCTTTCCTTCACAACTTGATTTTAGCCGTTCCATGGCTCATGTTCCATTCCACCGTGCCGAACCATACTATGGTGGCTTAATTGCTGCTTATGGGCCACAAGCTATGTTTCATCATCCCCAGATGATGGGGATTTCTCCTGGTCGGGTTCCCCTGCCTCTTGATCTTACAGAAGATGAGCCAATTTATGTAAACGCAAAACAGTACCGTGCAATTCTGAGGCGAAGGCAATTTCGTGCCAAGCTTGAAGCTCAAAACAAGCTAGTCAAAGTTCGGAAGCCTTATCTTCATGAATCTCGACATGTTCATGCATTAAAGAGGGCTAGAGGATCTGGTGGGCGCTTTCTCAACATGAAAAAGCTCCAAGGTTCTAAGCCTAACTCCACAAGCCATAGAGTGGATGTTTCAGGTTCTGCTCAGCTACATTTGACCGGAAATATGTCAGAACCTAATGTTCACGAGGCTGACAACTACCGAGATGGTGCTTCCACAACTTCTTGCTCTGACATCACTAGCACCTCCAACAGTGATGACATCTTTCCACGGCAAGATTTCAGGTTCTCTGGCTACCCCTCTCATATGGGTGGGACACTGCAAGTCCCGCTAGTTGATTTTCATGGTGGTGGAAACCAGCAGCATGTTTCCATCTTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030522 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0045892 GO:0045934 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0104004 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

295

Amino Acids

32.52

Weight (kDa)

9.51

Isoelectric Point (pI)

47.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	136 - 191	2.4e-26	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17590 AT1G17590 AT1G17590 AT1G17590 AT1G72830 AT1G72830 AT1G72830
fragaria_vesca	FvH4_6g34360 FvH4_6g34360 FvH4_6g34360
malus_domestica	MD09G1186200.v1.1
prunus_persica	Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1
pyrus_communis	pycom09g10340
rosa_chinensis	RchiOBHm_Chr2g0144701
rosa_laevigata	RLG00000020102
rosa_multiflora	Rmu_co8510597.1_g000001 Rmu_sc0000227.1_g000003 Rmu_sc0037791.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101060
rosa_rugosa	Rorug02G0388800 Rorug02G0388900 Rorug02G0389000
rosa_samantha	Rh2AG440800 Rh2BG451200 Rh2CG428000 Rh2DG461200
rosa_wichuraiana	Rw2G036060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	299, 355, 625
AciI	CCGC	1 cut(s)	830
AclWI	GGATC	1 cut(s)	565
AcsI	RAATTY	1 cut(s)	224
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	5 cut(s)	262, 299, 355, 625, 879
AflIII	ACRYGT	2 cut(s)	49, 529
AgsI	TTSAA	3 cut(s)	56, 118, 476
AjnI	CCWGG	2 cut(s)	60, 367
AloI	GAACNNNNNNTCC	2 cut(s)	36, 68
AluBI	AGCT	6 cut(s)	332, 472, 479, 490, 589, 649
AluI	AGCT	6 cut(s)	332, 472, 479, 490, 589, 649
AlwI	GGATC	1 cut(s)	565
AlwNI	CAGNNNCTG	1 cut(s)	641
AoxI	GGCC	2 cut(s)	187, 323
ApeKI	GCWGC	2 cut(s)	314, 862
ApoI	RAATTY	1 cut(s)	224
Asp700I	GAANNNNTTC	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	570
AspS9I	GGNCC	2 cut(s)	187, 323
BauI	CACGAG	1 cut(s)	686
BbvI	GCAGC	2 cut(s)	301, 874
BccI	CCATC	4 cut(s)	80, 349, 701, 881
BceAI	ACGGC	2 cut(s)	240, 788
BciT130I	CCWGG	2 cut(s)	62, 369
BfaI	CTAG	6 cut(s)	111, 140, 491, 552, 741, 833
BfoI	RGCGCY	1 cut(s)	571
BisI	GCNGC	2 cut(s)	315, 863
BlpI	GCTNAGC	1 cut(s)	645
BlsI	GCNGC	2 cut(s)	316, 864
Bme1390I	CCNGG	2 cut(s)	62, 369
BmgT120I	GGNCC	2 cut(s)	187, 323
BmiI	GGNNCC	2 cut(s)	188, 378
BmrFI	CCNGG	2 cut(s)	62, 369
BpmI	CTGGAG	1 cut(s)	63
Bpu1102I	GCTNAGC	1 cut(s)	645
BsaJI	CCNNGG	3 cut(s)	261, 592, 770
BsaWI	WCCGGW	2 cut(s)	659, 879
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bsc4I	CCNNNNNNNGG	5 cut(s)	262, 299, 355, 625, 879
BseBI	CCWGG	2 cut(s)	62, 369
BseDI	CCNNGG	3 cut(s)	261, 592, 770
BseGI	GGATG	3 cut(s)	68, 343, 634
BseLI	CCNNNNNNNGG	5 cut(s)	262, 299, 355, 625, 879
BseMII	CTCAG	2 cut(s)	437, 659
BseRI	GAGGAG	1 cut(s)	196
BseXI	GCAGC	2 cut(s)	301, 874
BshFI	GGCC	2 cut(s)	189, 325
BsiSI	CCGG	2 cut(s)	660, 880
BslFI	GGGAC	2 cut(s)	812, 829
BslI	CCNNNNNNNGG	5 cut(s)	262, 299, 355, 625, 879
BsmFI	GGGAC	2 cut(s)	812, 829
BsnI	GGCC	2 cut(s)	189, 325
Bsp143I	GATC	2 cut(s)	391, 557
Bsp1720I	GCTNAGC	1 cut(s)	645
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	1 cut(s)	830
BspANI	GGCC	2 cut(s)	189, 325
BspCNI	CTCAG	2 cut(s)	438, 658
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	2 cut(s)	188, 378
BspPI	GGATC	1 cut(s)	565
BssECI	CCNNGG	3 cut(s)	261, 592, 770
BssMI	GATC	2 cut(s)	391, 557
BssSI	CACGAG	1 cut(s)	686
BssT1I	CCWWGG	2 cut(s)	261, 592
Bst2BI	CACGAG	1 cut(s)	686
Bst2UI	CCWGG	2 cut(s)	62, 369
Bst4CI	ACNGT	4 cut(s)	284, 432, 437, 755
BstDEI	CTNAG	3 cut(s)	446, 600, 645
BstDSI	CCRYGG	2 cut(s)	261, 770
BstF5I	GGATG	3 cut(s)	68, 343, 634
BstH2I	RGCGCY	1 cut(s)	571
BstHHI	GCGC	1 cut(s)	570
BstKTI	GATC	2 cut(s)	394, 560
BstMBI	GATC	2 cut(s)	391, 557
BstMWI	GCNNNNNNNGC	1 cut(s)	829
BstNI	CCWGG	2 cut(s)	62, 369
BstNSI	RCATGY	3 cut(s)	53, 533, 869
BstSCI	CCNGG	2 cut(s)	60, 367
BstV1I	GCAGC	2 cut(s)	301, 874
BstX2I	RGATCY	1 cut(s)	557
BstYI	RGATCY	1 cut(s)	557
BsuRI	GGCC	2 cut(s)	189, 325
BtgI	CCRYGG	2 cut(s)	261, 770
BtsCI	GGATG	3 cut(s)	68, 343, 634
BtsI	GCAGTG	1 cut(s)	818
BtsIMutI	CAGTG	2 cut(s)	760, 818
CaiI	CAGNNNCTG	1 cut(s)	641
CciI	TCATGA	1 cut(s)	517
CfoI	GCGC	1 cut(s)	570
Cfr13I	GGNCC	2 cut(s)	187, 323
Csp6I	GTAC	1 cut(s)	433
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CviAII	CATG	9 cut(s)	50, 262, 269, 518, 530, 536, 580, 845, 866
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	3 cut(s)	446, 600, 645
DpnI	GATC	2 cut(s)	393, 559
DpnII	GATC	2 cut(s)	391, 557
Eco130I	CCWWGG	2 cut(s)	261, 592
EcoRII	CCWGG	2 cut(s)	60, 367
EcoT14I	CCWWGG	2 cut(s)	261, 592
EcoT22I	ATGCAT	1 cut(s)	541
ErhI	CCWWGG	2 cut(s)	261, 592
FaeI	CATG	9 cut(s)	53, 265, 272, 521, 533, 539, 583, 848, 869
FaqI	GGGAC	2 cut(s)	812, 829
FatI	CATG	9 cut(s)	49, 261, 268, 517, 529, 535, 579, 844, 865
FauI	CCCGC	1 cut(s)	837
FauNDI	CATATG	1 cut(s)	807
Fnu4HI	GCNGC	2 cut(s)	315, 863
FokI	GGATG	3 cut(s)	55, 330, 641
Fsp4HI	GCNGC	2 cut(s)	315, 863
FspBI	CTAG	6 cut(s)	111, 140, 491, 552, 741, 833
GlaI	GCGC	1 cut(s)	569
GluI	GCNGC	2 cut(s)	315, 863
GsuI	CTGGAG	1 cut(s)	63
HaeII	RGCGCY	1 cut(s)	571
HaeIII	GGCC	2 cut(s)	189, 325
HapII	CCGG	2 cut(s)	660, 880
HhaI	GCGC	1 cut(s)	570
Hin1II	CATG	9 cut(s)	53, 265, 272, 521, 533, 539, 583, 848, 869
Hin6I	GCGC	1 cut(s)	568
HinP1I	GCGC	1 cut(s)	568
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	2 cut(s)	65, 521
HpaII	CCGG	2 cut(s)	660, 880
Hpy166II	GTNNAC	2 cut(s)	421, 685
Hpy188I	TCNGA	6 cut(s)	85, 103, 447, 504, 673, 733
Hpy188III	TCNNGA	8 cut(s)	42, 56, 153, 221, 389, 518, 525, 686
Hpy8I	GTNNAC	2 cut(s)	421, 685
HpyAV	CCTTC	3 cut(s)	116, 246, 447
HpyCH4III	ACNGT	4 cut(s)	284, 432, 437, 755
HpyCH4V	TGCA	3 cut(s)	440, 539, 823
HpyF10VI	GCNNNNNNNGC	1 cut(s)	829
HpyF3I	CTNAG	3 cut(s)	446, 600, 645
Hsp92II	CATG	9 cut(s)	53, 265, 272, 521, 533, 539, 583, 848, 869
HspAI	GCGC	1 cut(s)	568
Kzo9I	GATC	2 cut(s)	391, 557
LmnI	GCTCC	1 cut(s)	594
Lsp1109I	GCAGC	2 cut(s)	301, 874
MaeI	CTAG	6 cut(s)	111, 140, 491, 552, 741, 833
MaeIII	GTNAC	1 cut(s)	9
MalI	GATC	2 cut(s)	393, 559
MboI	GATC	2 cut(s)	391, 557
MboII	GAAGA	3 cut(s)	413, 506, 868
MflI	RGATCY	1 cut(s)	557
MluCI	AATT	5 cut(s)	224, 309, 411, 441, 458
MmeI	TCCRAC	1 cut(s)	774
Mph1103I	ATGCAT	1 cut(s)	541
MroXI	GAANNNNTTC	1 cut(s)	51
MseI	TTAA	2 cut(s)	308, 542
MslI	CAYNNNNRTG	3 cut(s)	534, 810, 849
MspI	CCGG	2 cut(s)	660, 880
MspR9I	CCNGG	2 cut(s)	62, 369
MvaI	CCWGG	2 cut(s)	62, 369
MwoI	GCNNNNNNNGC	1 cut(s)	829
NcoI	CCATGG	1 cut(s)	261
NdeI	CATATG	1 cut(s)	807
NdeII	GATC	2 cut(s)	391, 557
NlaIII	CATG	9 cut(s)	53, 265, 272, 521, 533, 539, 583, 848, 869
NlaIV	GGNNCC	2 cut(s)	188, 378
NmuCI	GTSAC	1 cut(s)	9
NsiI	ATGCAT	1 cut(s)	541
NspI	RCATGY	3 cut(s)	53, 533, 869
PagI	TCATGA	1 cut(s)	517
PciI	ACATGT	2 cut(s)	49, 529
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	2 cut(s)	65, 521
PflMI	CCANNNNNTGG	3 cut(s)	299, 355, 625
PkrI	GCNGC	2 cut(s)	316, 864
PscI	ACATGT	2 cut(s)	49, 529
Psp6I	CCWGG	2 cut(s)	60, 367
PspGI	CCWGG	2 cut(s)	60, 367
PspN4I	GGNNCC	2 cut(s)	188, 378
PspPI	GGNCC	2 cut(s)	187, 323
PstNI	CAGNNNCTG	1 cut(s)	641
PsuI	RGATCY	1 cut(s)	557
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
RseI	CAYNNNNRTG	3 cut(s)	534, 810, 849
SaqAI	TTAA	2 cut(s)	308, 542
SatI	GCNGC	2 cut(s)	315, 863
Sau3AI	GATC	2 cut(s)	391, 557
Sau96I	GGNCC	2 cut(s)	187, 323
ScrFI	CCNGG	2 cut(s)	62, 369
SmiMI	CAYNNNNRTG	3 cut(s)	534, 810, 849
Sse9I	AATT	5 cut(s)	224, 309, 411, 441, 458
SsiI	CCGC	1 cut(s)	830
SspMI	CTAG	6 cut(s)	111, 140, 491, 552, 741, 833
StyD4I	CCNGG	2 cut(s)	60, 367
StyI	CCWWGG	2 cut(s)	261, 592
TaaI	ACNGT	4 cut(s)	284, 432, 437, 755
TaqI	TCGA	1 cut(s)	526
TasI	AATT	5 cut(s)	224, 309, 411, 441, 458
TfiI	GAWTC	2 cut(s)	65, 521
Tru1I	TTAA	2 cut(s)	308, 542
Tru9I	TTAA	2 cut(s)	308, 542
TscAI	CASTG	2 cut(s)	760, 825
TseFI	GTSAC	1 cut(s)	9
TseI	GCWGC	2 cut(s)	314, 862
Tsp45I	GTSAC	1 cut(s)	9
TspDTI	ATGAA	8 cut(s)	57, 177, 329, 506, 524, 534, 596, 833
TspRI	CASTG	2 cut(s)	760, 825
Van91I	CCANNNNNTGG	3 cut(s)	299, 355, 625
XapI	RAATTY	1 cut(s)	224
XceI	RCATGY	3 cut(s)	53, 533, 869
XmnI	GAANNNNTTC	1 cut(s)	51
XspI	CTAG	6 cut(s)	111, 140, 491, 552, 741, 833
Zsp2I	ATGCAT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.