Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000227.1

Orthogroup ID

OG0004151

Physical Location & Seq

Genomic Coordinates Forward (+)

9623 .. 12347

Gene Structure 2725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000227.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

atgagccaactgttcctacgtctcatgagccgacttttcccaaggttcctaacaccctggacgccgaggaatagatcaccgtccgatgcaggaccccacctcgtccaagggtccccagattaccgaaccattcgaacacccgacgttgacccgaaaagctgcacgcgaagcaacagcgcgtgggctcatgttccattccactgtgctgaaccatactttggtggcttacttgctgcttatgggccacaagctatgtttcatcatccccagatgatggggatttctcctggtcgggttcccttgcctcttgatctcacagaaaatgaaccgatttatgtaaacgcaaaacagtaccgcgcaattctgaggaggaggcaatttcgtgccaagcttgaagctcaaaacaagctgaccaaagttcggaagccgtatcttcatgaatctcgacatgttcatgcattaaagagggctaggggatctggtgggcgctttctcaacatgaaaaagctccaagattccaagcctaactccacaagccatagagtggatgcttcaggttctgctcagctacatttgaccagaaatatgtcagaatctgatgttcatgaggctgacaactttcgagatggtgcttcgacaacctcttgctcggacgtcactagcacctctaacagtgacgacatctttccacggcaagattttaggttctctggctacccctctcacattggcgggatgctgcaagtttctctagttgatgtgcgtggtggcggaaaccagcaccatgtttccatcttccggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030522 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0045892 GO:0045934 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0104004 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

267

Amino Acids

30.09

Weight (kDa)

10.14

Isoelectric Point (pI)

48.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17590 AT1G17590 AT1G17590 AT1G17590 AT1G72830 AT1G72830 AT1G72830
fragaria_vesca	FvH4_6g34360 FvH4_6g34360 FvH4_6g34360
malus_domestica	MD09G1186200.v1.1
prunus_persica	Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1 Prupe.3G043900_v2.0.a1
pyrus_communis	pycom09g10340
rosa_chinensis	RchiOBHm_Chr2g0144701
rosa_laevigata	RLG00000020102
rosa_multiflora	Rmu_co8510597.1_g000001 Rmu_sc0000227.1_g000003 Rmu_sc0037791.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101060
rosa_rugosa	Rorug02G0388800 Rorug02G0388900 Rorug02G0389000
rosa_samantha	Rh2AG440800 Rh2BG451200 Rh2CG428000 Rh2DG461200
rosa_wichuraiana	Rw2G036060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	657
AccB7I	CCANNNNNTGG	3 cut(s)	218, 274, 544
AccII	CGCG	3 cut(s)	166, 179, 357
AciI	CCGC	3 cut(s)	355, 732, 771
AclWI	GGATC	1 cut(s)	484
AcuI	CTGAAG	1 cut(s)	537
AcyI	GRCGYC	2 cut(s)	62, 654
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	5 cut(s)	218, 274, 420, 544, 798
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	1 cut(s)	395
AjnI	CCWGG	2 cut(s)	56, 286
AjuI	GAANNNNNNNTTGG	2 cut(s)	201, 233
AluBI	AGCT	7 cut(s)	159, 251, 391, 398, 409, 508, 568
AluI	AGCT	7 cut(s)	159, 251, 391, 398, 409, 508, 568
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	1 cut(s)	484
AlwNI	CAGNNNCTG	2 cut(s)	560, 596
AoxI	GGCC	1 cut(s)	242
ApeKI	GCWGC	3 cut(s)	159, 233, 739
AspLEI	GCGC	3 cut(s)	179, 359, 489
AspS9I	GGNCC	3 cut(s)	92, 111, 242
AsuHPI	GGTGA	1 cut(s)	69
AsuII	TTCGAA	1 cut(s)	133
AvaII	GGWCC	2 cut(s)	92, 111
BanII	GRGCYC	1 cut(s)	187
BbvI	GCAGC	3 cut(s)	146, 220, 726
BccI	CCATC	3 cut(s)	268, 620, 800
BceAI	ACGGC	2 cut(s)	412, 707
BciT130I	CCWGG	2 cut(s)	58, 288
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	3 cut(s)	471, 660, 752
BfoI	RGCGCY	1 cut(s)	490
BisI	GCNGC	3 cut(s)	160, 234, 740
BlpI	GCTNAGC	1 cut(s)	564
BlsI	GCNGC	3 cut(s)	161, 235, 741
Bme1390I	CCNGG	2 cut(s)	58, 288
Bme18I	GGWCC	2 cut(s)	92, 111
BmgT120I	GGNCC	3 cut(s)	92, 111, 242
BmiI	GGNNCC	5 cut(s)	47, 94, 112, 113, 297
BmrFI	CCNGG	2 cut(s)	58, 288
BmsI	GCATC	3 cut(s)	76, 538, 726
Bpu1102I	GCTNAGC	1 cut(s)	564
Bpu14I	TTCGAA	1 cut(s)	133
BsaHI	GRCGYC	2 cut(s)	62, 654
BsaJI	CCNNGG	5 cut(s)	41, 56, 65, 106, 689
BsaWI	WCCGGW	1 cut(s)	798
Bsc4I	CCNNNNNNNGG	5 cut(s)	218, 274, 420, 544, 798
BseBI	CCWGG	2 cut(s)	58, 288
BseDI	CCNNGG	5 cut(s)	41, 56, 65, 106, 689
BseGI	GGATG	3 cut(s)	262, 553, 741
BseLI	CCNNNNNNNGG	5 cut(s)	218, 274, 420, 544, 798
BseMII	CTCAG	2 cut(s)	356, 578
BseRI	GAGGAG	2 cut(s)	382, 385
BseXI	GCAGC	3 cut(s)	146, 220, 726
BsgI	GTGCAG	1 cut(s)	145
Bsh1236I	CGCG	3 cut(s)	166, 179, 357
BshFI	GGCC	1 cut(s)	244
BsiSI	CCGG	1 cut(s)	799
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	5 cut(s)	218, 274, 420, 544, 798
BsmAI	GTCTC	1 cut(s)	26
BsmBI	CGTCTC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	244
Bsp119I	TTCGAA	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	3 cut(s)	74, 310, 476
Bsp1720I	GCTNAGC	1 cut(s)	564
BspACI	CCGC	3 cut(s)	355, 732, 771
BspANI	GGCC	1 cut(s)	244
BspCNI	CTCAG	2 cut(s)	357, 577
BspFNI	CGCG	3 cut(s)	166, 179, 357
BspHI	TCATGA	3 cut(s)	24, 436, 604
BspLI	GGNNCC	5 cut(s)	47, 94, 112, 113, 297
BspPI	GGATC	1 cut(s)	484
BspT104I	TTCGAA	1 cut(s)	133
BssECI	CCNNGG	5 cut(s)	41, 56, 65, 106, 689
BssMI	GATC	3 cut(s)	74, 310, 476
BssNI	GRCGYC	2 cut(s)	62, 654
BssT1I	CCWWGG	2 cut(s)	41, 106
Bst2UI	CCWGG	2 cut(s)	58, 288
Bst4CI	ACNGT	5 cut(s)	12, 81, 203, 351, 674
BstACI	GRCGYC	2 cut(s)	62, 654
BstBI	TTCGAA	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	2 cut(s)	365, 564
BstDSI	CCRYGG	1 cut(s)	689
BstF5I	GGATG	3 cut(s)	262, 553, 741
BstFNI	CGCG	3 cut(s)	166, 179, 357
BstH2I	RGCGCY	1 cut(s)	490
BstHHI	GCGC	3 cut(s)	179, 359, 489
BstKTI	GATC	3 cut(s)	77, 313, 479
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	3 cut(s)	74, 310, 476
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstNI	CCWGG	2 cut(s)	58, 288
BstNSI	RCATGY	1 cut(s)	452
BstSCI	CCNGG	2 cut(s)	56, 286
BstUI	CGCG	3 cut(s)	166, 179, 357
BstV1I	GCAGC	3 cut(s)	146, 220, 726
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
BsuRI	GGCC	1 cut(s)	244
BtgI	CCRYGG	1 cut(s)	689
BtsCI	GGATG	3 cut(s)	262, 553, 741
BtsIMutI	CAGTG	2 cut(s)	199, 679
Cac8I	GCNNGC	1 cut(s)	164
CaiI	CAGNNNCTG	2 cut(s)	560, 596
CciI	TCATGA	3 cut(s)	24, 436, 604
CfoI	GCGC	3 cut(s)	179, 359, 489
Cfr13I	GGNCC	3 cut(s)	92, 111, 242
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	8 cut(s)	25, 188, 437, 449, 455, 499, 605, 785
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	2 cut(s)	365, 564
DpnI	GATC	3 cut(s)	76, 312, 478
DpnII	GATC	3 cut(s)	74, 310, 476
EciI	GGCGGA	1 cut(s)	786
Eco130I	CCWWGG	2 cut(s)	41, 106
Eco24I	GRGCYC	1 cut(s)	187
Eco47I	GGWCC	2 cut(s)	92, 111
Eco57I	CTGAAG	1 cut(s)	537
EcoO109I	RGGNCCY	2 cut(s)	92, 111
EcoRII	CCWGG	2 cut(s)	56, 286
EcoT14I	CCWWGG	2 cut(s)	41, 106
EcoT22I	ATGCAT	1 cut(s)	460
EcoT38I	GRGCYC	1 cut(s)	187
ErhI	CCWWGG	2 cut(s)	41, 106
Esp3I	CGTCTC	1 cut(s)	26
FaeI	CATG	8 cut(s)	28, 191, 440, 452, 458, 502, 608, 788
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	8 cut(s)	24, 187, 436, 448, 454, 498, 604, 784
FauI	CCCGC	1 cut(s)	725
Fnu4HI	GCNGC	3 cut(s)	160, 234, 740
FokI	GGATG	3 cut(s)	249, 560, 748
FriOI	GRGCYC	1 cut(s)	187
Fsp4HI	GCNGC	3 cut(s)	160, 234, 740
FspBI	CTAG	3 cut(s)	471, 660, 752
GlaI	GCGC	3 cut(s)	178, 358, 488
GluI	GCNGC	3 cut(s)	160, 234, 740
HaeII	RGCGCY	1 cut(s)	490
HaeIII	GGCC	1 cut(s)	244
HapII	CCGG	1 cut(s)	799
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	3 cut(s)	179, 359, 489
Hin1I	GRCGYC	2 cut(s)	62, 654
Hin1II	CATG	8 cut(s)	28, 191, 440, 452, 458, 502, 608, 788
Hin6I	GCGC	3 cut(s)	177, 357, 487
HinP1I	GCGC	3 cut(s)	177, 357, 487
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	3 cut(s)	440, 515, 593
HpaII	CCGG	1 cut(s)	799
HphI	GGTGA	1 cut(s)	69
Hpy166II	GTNNAC	2 cut(s)	148, 340
Hpy188I	TCNGA	6 cut(s)	85, 366, 423, 592, 598, 652
Hpy188III	TCNNGA	6 cut(s)	25, 308, 437, 444, 605, 623
Hpy8I	GTNNAC	2 cut(s)	148, 340
Hpy99I	CGWCG	1 cut(s)	146
HpyCH4III	ACNGT	5 cut(s)	12, 81, 203, 351, 674
HpyCH4IV	ACGT	3 cut(s)	19, 144, 654
HpyCH4V	TGCA	4 cut(s)	89, 162, 458, 742
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpyF3I	CTNAG	2 cut(s)	365, 564
HpySE526I	ACGT	3 cut(s)	19, 144, 654
Hsp92I	GRCGYC	2 cut(s)	62, 654
Hsp92II	CATG	8 cut(s)	28, 191, 440, 452, 458, 502, 608, 788
HspAI	GCGC	3 cut(s)	177, 357, 487
KflI	GGGWCCC	1 cut(s)	111
Kzo9I	GATC	3 cut(s)	74, 310, 476
LmnI	GCTCC	1 cut(s)	513
Lsp1109I	GCAGC	3 cut(s)	146, 220, 726
LweI	GCATC	3 cut(s)	76, 538, 726
MaeI	CTAG	3 cut(s)	471, 660, 752
MaeII	ACGT	3 cut(s)	19, 144, 654
MaeIII	GTNAC	2 cut(s)	655, 674
MalI	GATC	3 cut(s)	76, 312, 478
MboI	GATC	3 cut(s)	74, 310, 476
MboII	GAAGA	2 cut(s)	425, 787
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	2 cut(s)	360, 377
Mph1103I	ATGCAT	1 cut(s)	460
MseI	TTAA	1 cut(s)	461
MslI	CAYNNNNRTG	1 cut(s)	453
MspI	CCGG	1 cut(s)	799
MspR9I	CCNGG	2 cut(s)	58, 288
MvaI	CCWGG	2 cut(s)	58, 288
MvnI	CGCG	3 cut(s)	166, 179, 357
MwoI	GCNNNNNNNGC	1 cut(s)	168
NdeII	GATC	3 cut(s)	74, 310, 476
NlaIII	CATG	8 cut(s)	28, 191, 440, 452, 458, 502, 608, 788
NlaIV	GGNNCC	5 cut(s)	47, 94, 112, 113, 297
NmeAIII	GCCGAG	1 cut(s)	90
NmuCI	GTSAC	2 cut(s)	655, 674
NsiI	ATGCAT	1 cut(s)	460
NspI	RCATGY	1 cut(s)	452
NspV	TTCGAA	1 cut(s)	133
PagI	TCATGA	3 cut(s)	24, 436, 604
PciI	ACATGT	1 cut(s)	448
PfeI	GAWTC	3 cut(s)	440, 515, 593
PflMI	CCANNNNNTGG	3 cut(s)	218, 274, 544
PkrI	GCNGC	3 cut(s)	161, 235, 741
PpuMI	RGGWCCY	2 cut(s)	92, 111
PscI	ACATGT	1 cut(s)	448
Psp5II	RGGWCCY	2 cut(s)	92, 111
Psp6I	CCWGG	2 cut(s)	56, 286
PspGI	CCWGG	2 cut(s)	56, 286
PspN4I	GGNNCC	5 cut(s)	47, 94, 112, 113, 297
PspPI	GGNCC	3 cut(s)	92, 111, 242
PspPPI	RGGWCCY	2 cut(s)	92, 111
PstNI	CAGNNNCTG	2 cut(s)	560, 596
PsuI	RGATCY	1 cut(s)	476
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	453
SaqAI	TTAA	1 cut(s)	461
SatI	GCNGC	3 cut(s)	160, 234, 740
Sau3AI	GATC	3 cut(s)	74, 310, 476
Sau96I	GGNCC	3 cut(s)	92, 111, 242
ScrFI	CCNGG	2 cut(s)	58, 288
SduI	GDGCHC	1 cut(s)	187
SfaNI	GCATC	3 cut(s)	76, 538, 726
SfuI	TTCGAA	1 cut(s)	133
SinI	GGWCC	2 cut(s)	92, 111
SmiMI	CAYNNNNRTG	1 cut(s)	453
Sse9I	AATT	2 cut(s)	360, 377
SsiI	CCGC	3 cut(s)	355, 732, 771
SspMI	CTAG	3 cut(s)	471, 660, 752
StyD4I	CCNGG	2 cut(s)	56, 286
StyI	CCWWGG	2 cut(s)	41, 106
TaaI	ACNGT	5 cut(s)	12, 81, 203, 351, 674
TaiI	ACGT	3 cut(s)	22, 147, 657
TaqI	TCGA	4 cut(s)	133, 445, 622, 635
TasI	AATT	2 cut(s)	360, 377
TfiI	GAWTC	3 cut(s)	440, 515, 593
Tru1I	TTAA	1 cut(s)	461
Tru9I	TTAA	1 cut(s)	461
TscAI	CASTG	2 cut(s)	206, 679
TseFI	GTSAC	2 cut(s)	655, 674
TseI	GCWGC	3 cut(s)	159, 233, 739
Tsp45I	GTSAC	2 cut(s)	655, 674
TspDTI	ATGAA	7 cut(s)	248, 339, 425, 443, 453, 515, 593
TspRI	CASTG	2 cut(s)	206, 679
Van91I	CCANNNNNTGG	3 cut(s)	218, 274, 544
VpaK11BI	GGWCC	2 cut(s)	92, 111
XceI	RCATGY	1 cut(s)	452
XspI	CTAG	3 cut(s)	471, 660, 752
ZraI	GACGTC	1 cut(s)	655
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.