AT1G18060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013063
Physical Location & Seq
Reverse (-)
6211832 .. 6213591
1760 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G18060.1

Sequence Viewer

Length: 681 bp
ATGATGGTCTCACTAGCTTCATGTGTTTCGTCCCCATCTTCTTCGTCTCTGTTCTTTAGTCGTCGGGAGAGATTACATTTGGTGAAAGCCACGGTGGATGGCAGGAACCAGATTGTCCCACCGGCAAAAGATCAAATCCCTAACAAACAAGTAACGGAGAGTGTGAATGTATTAAAAACGGCTGCAAAAACTCGGAAAGTTGCAGCAGATGAGATTTTAGCTGCTTTCTCTGCTATCGAAAAGGCTAAGATTGATCCATCCACTTTCCTTGAAACGCTTGGTGGTCCCGAGTCTCCTGGACGAACATGGATGCTTATCTTCACCGCCGAGAAGAAACTGACGAAAGGTCGTTATTTCCCTCTAACTGCTGTTCAGAGATTTGATGCTGCGGGAAAAAGAATAGAGAATGGGGTGTATCTTGGTCCATTTGGAGCATTAACATTCGAAGGAAGGTTTTCATGGAAGAATCGGATACTAGCTTTTGTCTTCGAACAGATCCGCATAAAGATTGGACCATTAGATCCTCTAGAGTTCAGCTTGGGGAAGAAAGACGCTGTGGAAGAGCCTAGTAATAAAGACCCTTTCTTCATTTGGTTCTACATCGATGAAGAAATAGCCGTTGCTCGAGGTAGAAGTGGCGGTACAGCTTTCTGGTGTCGTTGTCGTCGCATTGCTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

25.2

Weight (kDa)

9.68

Isoelectric Point (pI)

50.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18060
fragaria_vesca FvH4_5g16950 FvH4_5g16950 FvH4_5g16950
malus_domestica MD06G1223100.v1.1
prunus_persica Prupe.5G228200_v2.0.a1
pyrus_communis pycom14g19360
rosa_chinensis RchiOBHm_Chr7g0179071
rosa_laevigata RLG00000005388
rosa_multiflora Rmu_sc0000888.1_g000015
rosa_roxburghii Rroxscaffold_3G00274420
rosa_rugosa Rorug06G0420600 Rorug06G0420700.1
rosa_samantha Rh7AG020100 Rh7BG019800 Rh7CG021100 Rh7DG020600
rosa_wichuraiana Rw7G001670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 324, 389, 499, 639
AclWI GGATC 3 cut(s) 248, 490, 515
AfaI GTAC 1 cut(s) 643
AgsI TTSAA 1 cut(s) 272
AhdI GACNNNNNGTC 1 cut(s) 345
AjnI CCWGG 1 cut(s) 295
AluBI AGCT 5 cut(s) 17, 221, 479, 537, 647
AluI AGCT 5 cut(s) 17, 221, 479, 537, 647
Alw26I GTCTC 3 cut(s) 13, 51, 297
AlwI GGATC 3 cut(s) 248, 490, 515
Ama87I CYCGRG 2 cut(s) 287, 624
ApeKI GCWGC 4 cut(s) 182, 203, 221, 386
Asp700I GAANNNNTTC 1 cut(s) 454
AspS9I GGNCC 3 cut(s) 284, 422, 512
AsuHPI GGTGA 2 cut(s) 94, 313
AsuII TTCGAA 2 cut(s) 444, 489
AvaI CYCGRG 2 cut(s) 287, 624
AvaII GGWCC 3 cut(s) 284, 422, 512
BarI GAAGNNNNNNTAC 2 cut(s) 625, 657
BbsI GAAGAC 1 cut(s) 478
BbvI GCAGC 4 cut(s) 169, 208, 215, 373
BccI CCATC 3 cut(s) 43, 92, 265
BceAI ACGGC 2 cut(s) 195, 602
BciT130I CCWGG 1 cut(s) 297
BciVI GTATCC 1 cut(s) 465
BcoDI GTCTC 3 cut(s) 13, 51, 297
BfaI CTAG 4 cut(s) 14, 476, 527, 567
BfuI GTATCC 1 cut(s) 465
BisI GCNGC 4 cut(s) 183, 204, 222, 387
BlsI GCNGC 4 cut(s) 184, 205, 223, 388
Bme1390I CCNGG 1 cut(s) 297
Bme18I GGWCC 3 cut(s) 284, 422, 512
BmeRI GACNNNNNGTC 1 cut(s) 345
BmeT110I CYCGRG 2 cut(s) 287, 624
BmgT120I GGNCC 3 cut(s) 284, 422, 512
BmiI GGNNCC 2 cut(s) 107, 286
BmrFI CCNGG 1 cut(s) 297
BmsI GCATC 2 cut(s) 300, 373
BpiI GAAGAC 1 cut(s) 478
Bpu14I TTCGAA 2 cut(s) 444, 489
Bsa29I ATCGAT 1 cut(s) 603
BsaBI GATNNNNATC 1 cut(s) 314
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 90
Bse118I RCCGGY 1 cut(s) 121
Bse3DI GCAATG 1 cut(s) 669
Bse8I GATNNNNATC 1 cut(s) 314
BseBI CCWGG 1 cut(s) 297
BseCI ATCGAT 1 cut(s) 603
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 3 cut(s) 103, 257, 315
BseJI GATNNNNATC 1 cut(s) 314
BseMI GCAATG 1 cut(s) 669
BseXI GCAGC 4 cut(s) 169, 208, 215, 373
BshVI ATCGAT 1 cut(s) 603
BsiHKCI CYCGRG 2 cut(s) 287, 624
BsiSI CCGG 1 cut(s) 122
BslFI GGGAC 3 cut(s) 16, 101, 270
BsmAI GTCTC 3 cut(s) 13, 51, 297
BsmBI CGTCTC 1 cut(s) 51
BsmFI GGGAC 3 cut(s) 16, 101, 270
Bso31I GGTCTC 1 cut(s) 13
BsoBI CYCGRG 2 cut(s) 287, 624
Bsp119I TTCGAA 2 cut(s) 444, 489
Bsp143I GATC 4 cut(s) 130, 253, 495, 520
BspACI CCGC 4 cut(s) 324, 389, 499, 639
BspDI ATCGAT 1 cut(s) 603
BspLI GGNNCC 2 cut(s) 107, 286
BspPI GGATC 3 cut(s) 248, 490, 515
BspQI GCTCTTC 1 cut(s) 555
BspT104I TTCGAA 2 cut(s) 444, 489
BspTNI GGTCTC 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 669
BsrFI RCCGGY 1 cut(s) 121
BssAI RCCGGY 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 4 cut(s) 130, 253, 495, 520
Bst2UI CCWGG 1 cut(s) 297
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 555
BstBI TTCGAA 2 cut(s) 444, 489
BstDEI CTNAG 1 cut(s) 246
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 3 cut(s) 103, 257, 315
BstKTI GATC 4 cut(s) 133, 256, 498, 523
BstMAI GTCTC 3 cut(s) 13, 51, 297
BstMBI GATC 4 cut(s) 130, 253, 495, 520
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstNI CCWGG 1 cut(s) 297
BstSCI CCNGG 1 cut(s) 295
BstV1I GCAGC 4 cut(s) 169, 208, 215, 373
BstV2I GAAGAC 1 cut(s) 478
BstX2I RGATCY 2 cut(s) 495, 520
BstYI RGATCY 2 cut(s) 495, 520
Bsu15I ATCGAT 1 cut(s) 603
BsuI GTATCC 1 cut(s) 465
BsuTUI ATCGAT 1 cut(s) 603
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 3 cut(s) 103, 257, 315
Cfr10I RCCGGY 1 cut(s) 121
Cfr13I GGNCC 3 cut(s) 284, 422, 512
ClaI ATCGAT 1 cut(s) 603
CseI GACGC 1 cut(s) 560
Csp6I GTAC 1 cut(s) 642
CspCI CAANNNNNGTGG 2 cut(s) 250, 285
CviAII CATG 3 cut(s) 21, 306, 459
CviQI GTAC 1 cut(s) 642
DdeI CTNAG 1 cut(s) 246
DpnI GATC 4 cut(s) 132, 255, 497, 522
DpnII GATC 4 cut(s) 130, 253, 495, 520
DriI GACNNNNNGTC 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 555
Eam1105I GACNNNNNGTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 555
Eco31I GGTCTC 1 cut(s) 13
Eco47I GGWCC 3 cut(s) 284, 422, 512
Eco88I CYCGRG 2 cut(s) 287, 624
EcoRII CCWGG 1 cut(s) 295
Esp3I CGTCTC 1 cut(s) 51
FaeI CATG 3 cut(s) 24, 309, 462
FaiI YATR 4 cut(s) 22, 307, 460, 503
FaqI GGGAC 3 cut(s) 16, 101, 270
FatI CATG 3 cut(s) 20, 305, 458
FauI CCCGC 1 cut(s) 382
Fnu4HI GCNGC 4 cut(s) 183, 204, 222, 387
FokI GGATG 3 cut(s) 110, 244, 322
Fsp4HI GCNGC 4 cut(s) 183, 204, 222, 387
FspBI CTAG 4 cut(s) 14, 476, 527, 567
GluI GCNGC 4 cut(s) 183, 204, 222, 387
HapII CCGG 1 cut(s) 122
HgaI GACGC 1 cut(s) 560
Hin1II CATG 3 cut(s) 24, 309, 462
HinfI GANTC 2 cut(s) 290, 466
HpaII CCGG 1 cut(s) 122
HphI GGTGA 2 cut(s) 94, 313
Hpy188I TCNGA 3 cut(s) 195, 375, 471
Hpy188III TCNNGA 3 cut(s) 65, 287, 527
Hpy99I CGWCG 2 cut(s) 66, 669
HpyAV CCTTC 2 cut(s) 440, 444
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 2 cut(s) 185, 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 1 cut(s) 246
Hsp92II CATG 3 cut(s) 24, 309, 462
Kzo9I GATC 4 cut(s) 130, 253, 495, 520
LguI GCTCTTC 1 cut(s) 555
LmnI GCTCC 1 cut(s) 431
LpnPI CCDG 6 cut(s) 88, 122, 135, 282, 309, 637
Lsp1109I GCAGC 4 cut(s) 169, 208, 215, 373
LweI GCATC 2 cut(s) 300, 373
MaeI CTAG 4 cut(s) 14, 476, 527, 567
MaeIII GTNAC 1 cut(s) 151
MalI GATC 4 cut(s) 132, 255, 497, 522
MboI GATC 4 cut(s) 130, 253, 495, 520
MflI RGATCY 2 cut(s) 495, 520
MlyI GAGTC 1 cut(s) 299
MnlI CCTC 3 cut(s) 369, 534, 620
MroXI GAANNNNTTC 1 cut(s) 454
MseI TTAA 2 cut(s) 173, 437
MspI CCGG 1 cut(s) 122
MspR9I CCNGG 1 cut(s) 297
MvaI CCWGG 1 cut(s) 297
MwoI GCNNNNNNNGC 1 cut(s) 230
NdeII GATC 4 cut(s) 130, 253, 495, 520
NlaIII CATG 3 cut(s) 24, 309, 462
NlaIV GGNNCC 2 cut(s) 107, 286
NmeAIII GCCGAG 1 cut(s) 352
NspV TTCGAA 2 cut(s) 444, 489
PaeR7I CTCGAG 1 cut(s) 624
PciSI GCTCTTC 1 cut(s) 555
PdmI GAANNNNTTC 1 cut(s) 454
PfeI GAWTC 1 cut(s) 466
PfoI TCCNGGA 1 cut(s) 295
PkrI GCNGC 4 cut(s) 184, 205, 223, 388
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 295
PspGI CCWGG 1 cut(s) 295
PspN4I GGNNCC 2 cut(s) 107, 286
PspPI GGNCC 3 cut(s) 284, 422, 512
PspXI VCTCGAGB 1 cut(s) 624
PsuI RGATCY 2 cut(s) 495, 520
RsaI GTAC 1 cut(s) 643
RsaNI GTAC 1 cut(s) 642
SapI GCTCTTC 1 cut(s) 555
SaqAI TTAA 2 cut(s) 173, 437
SatI GCNGC 4 cut(s) 183, 204, 222, 387
Sau3AI GATC 4 cut(s) 130, 253, 495, 520
Sau96I GGNCC 3 cut(s) 284, 422, 512
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 297
SetI ASST 8 cut(s) 19, 223, 349, 455, 481, 539, 631, 649
SfaNI GCATC 2 cut(s) 300, 373
Sfr274I CTCGAG 1 cut(s) 624
SfuI TTCGAA 2 cut(s) 444, 489
SinI GGWCC 3 cut(s) 284, 422, 512
SlaI CTCGAG 1 cut(s) 624
SmlI CTYRAG 1 cut(s) 624
SmoI CTYRAG 1 cut(s) 624
SsiI CCGC 4 cut(s) 324, 389, 499, 639
SspMI CTAG 4 cut(s) 14, 476, 527, 567
StyD4I CCNGG 1 cut(s) 295
TaaI ACNGT 1 cut(s) 94
TaqI TCGA 5 cut(s) 237, 444, 489, 603, 625
TfiI GAWTC 1 cut(s) 466
Tru1I TTAA 2 cut(s) 173, 437
Tru9I TTAA 2 cut(s) 173, 437
TseI GCWGC 4 cut(s) 182, 203, 221, 386
TspDTI ATGAA 4 cut(s) 9, 447, 577, 621
TspGWI ACGGA 1 cut(s) 170
VpaK11BI GGWCC 3 cut(s) 284, 422, 512
XbaI TCTAGA 1 cut(s) 526
XhoI CTCGAG 1 cut(s) 624
XmnI GAANNNNTTC 1 cut(s) 454
XspI CTAG 4 cut(s) 14, 476, 527, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.