Prupe.5G228200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013063
Physical Location & Seq
Reverse (-)
17518981 .. 17520664
1684 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G228200.1

Sequence Viewer

Length: 759 bp
ATGGGCTCACAGACAGCAGTGTCCTACTTGATGGCTCTGAATTCTTCTCAAGCATCCCTCAGACTCAGACCCTCAAGTTTTCCCCTCCAAATCCCACCTCATGCCAAGGCCACAAGCCGCAATCTGATTCTCAAATTTCCCAGAGCAAGAACCAGAGCAACCCTTGATGGCAAGGAACAAAGTGCCACCACCACACCTCTACTTGTCCAGGAACCACAGCCCAACAGAGAAGTTGAGGAGAGTGTGAAAGTGCTCAAGAATGCGGCAAAAACAAGACGGGTGGTTGCAGAGGAGGTTCTCTCTGCTCTATCTGTCATTGAGAAGGCAAAACTTGACCCCTCCGGGTTTCTCGATACGCTTGGTGGATCAAAATCCCCTGGCAGAACCTGGATGCTCATTTTTACTGCTGAGAAGGAATTGAAGGGTGGTCGCTACTTCCCTATTACAGCTGTTCAGAGGTTCGATGCTGCTGGAAAGAGAATTGAGAATGGAGTGTATTTTGGGCCAATTGGATGCTTAACATTTGAAGGAAGATTTTCTTGGAAGAAGAGAATACTGGCCTTCATCTTCGAGTGTATCCGGATAAAAGTTGGACCTTTGAAAGCTTTAGAGATCAGTCTAGGCCAAAAGGATGACAGAGAGCCTAGCACGAAGGATCCCTTCTTTATATGGTTTTACATTGATGAAGAATTAGCAGTTGGTCGAGGCAAAAGTGGAGGAACTGCTTTCTGGTGCCGCTGTCGACGTGTAATATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

28.09

Weight (kDa)

9.91

Isoelectric Point (pI)

48.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18060
fragaria_vesca FvH4_5g16950 FvH4_5g16950 FvH4_5g16950
malus_domestica MD06G1223100.v1.1
prunus_persica Prupe.5G228200_v2.0.a1
pyrus_communis pycom14g19360
rosa_chinensis RchiOBHm_Chr7g0179071
rosa_laevigata RLG00000005388
rosa_multiflora Rmu_sc0000888.1_g000015
rosa_roxburghii Rroxscaffold_3G00274420
rosa_rugosa Rorug06G0420600 Rorug06G0420700.1
rosa_samantha Rh7AG020100 Rh7BG019800 Rh7CG021100 Rh7DG020600
rosa_wichuraiana Rw7G001670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 732
AccI GTMKAC 1 cut(s) 742
AccIII TCCGGA 1 cut(s) 579
AciI CCGC 3 cut(s) 118, 263, 736
AclWI GGATC 3 cut(s) 373, 650, 663
AcsI RAATTY 2 cut(s) 40, 134
AflIII ACRYGT 1 cut(s) 745
AgsI TTSAA 3 cut(s) 421, 527, 601
AjiI CACGTC 1 cut(s) 746
AjnI CCWGG 3 cut(s) 207, 376, 386
AjuI GAANNNNNNNTTGG 4 cut(s) 523, 555, 681, 713
AluBI AGCT 2 cut(s) 449, 605
AluI AGCT 2 cut(s) 449, 605
Alw21I GWGCWC 1 cut(s) 255
AlwI GGATC 3 cut(s) 373, 650, 663
AlwNI CAGNNNCTG 1 cut(s) 387
Aor13HI TCCGGA 1 cut(s) 579
AoxI GGCC 4 cut(s) 108, 503, 558, 622
ApeKI GCWGC 1 cut(s) 467
ApoI RAATTY 2 cut(s) 40, 134
Asp700I GAANNNNTTC 1 cut(s) 535
AspS9I GGNCC 2 cut(s) 503, 593
AsuC2I CCSGG 1 cut(s) 343
AvaII GGWCC 1 cut(s) 593
BamHI GGATCC 1 cut(s) 655
BanI GGYRCC 1 cut(s) 732
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 1 cut(s) 454
BccI CCATC 2 cut(s) 25, 161
BciT130I CCWGG 3 cut(s) 209, 378, 388
BciVI GTATCC 1 cut(s) 587
BcnI CCSGG 1 cut(s) 343
BfaI CTAG 2 cut(s) 620, 645
BfuI GTATCC 1 cut(s) 587
BisI GCNGC 4 cut(s) 118, 264, 468, 736
BlsI GCNGC 4 cut(s) 119, 265, 469, 737
Bme1390I CCNGG 4 cut(s) 209, 343, 378, 388
Bme18I GGWCC 1 cut(s) 593
BmgBI CACGTC 1 cut(s) 746
BmgT120I GGNCC 2 cut(s) 503, 593
BmiI GGNNCC 3 cut(s) 213, 657, 734
BmrFI CCNGG 4 cut(s) 209, 343, 378, 388
BmsI GCATC 4 cut(s) 62, 381, 454, 503
BplI GAGNNNNNCTC 2 cut(s) 284, 316
BpuEI CTTGAG 3 cut(s) 33, 58, 239
BpuMI CCSGG 1 cut(s) 343
BsaBI GATNNNNATC 1 cut(s) 370
BsaJI CCNNGG 2 cut(s) 105, 376
BsaWI WCCGGW 1 cut(s) 579
Bse1I ACTGG 1 cut(s) 561
Bse8I GATNNNNATC 1 cut(s) 370
BseAI TCCGGA 1 cut(s) 579
BseBI CCWGG 3 cut(s) 209, 378, 388
BseDI CCNNGG 2 cut(s) 105, 376
BseGI GGATG 4 cut(s) 53, 396, 518, 637
BseJI GATNNNNATC 1 cut(s) 370
BseMII CTCAG 3 cut(s) 73, 79, 399
BseNI ACTGG 1 cut(s) 561
BseRI GAGGAG 2 cut(s) 251, 305
BseXI GCAGC 1 cut(s) 454
BshFI GGCC 4 cut(s) 110, 505, 560, 624
BshNI GGYRCC 1 cut(s) 732
BsiHKAI GWGCWC 1 cut(s) 255
BsiSI CCGG 2 cut(s) 342, 580
BsmI GAATGC 1 cut(s) 265
BsnI GGCC 4 cut(s) 110, 505, 560, 624
Bsp1286I GDGCHC 2 cut(s) 8, 255
Bsp13I TCCGGA 1 cut(s) 579
Bsp143I GATC 3 cut(s) 365, 612, 655
BspACI CCGC 3 cut(s) 118, 263, 736
BspANI GGCC 4 cut(s) 110, 505, 560, 624
BspCNI CTCAG 3 cut(s) 72, 78, 400
BspEI TCCGGA 1 cut(s) 579
BspLI GGNNCC 3 cut(s) 213, 657, 734
BspPI GGATC 3 cut(s) 373, 650, 663
BspT107I GGYRCC 1 cut(s) 732
BsrI ACTGG 1 cut(s) 561
BssECI CCNNGG 2 cut(s) 105, 376
BssMI GATC 3 cut(s) 365, 612, 655
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 3 cut(s) 209, 378, 388
Bst6I CTCTTC 1 cut(s) 542
BstDEI CTNAG 3 cut(s) 59, 65, 408
BstF5I GGATG 4 cut(s) 53, 396, 518, 637
BstKTI GATC 3 cut(s) 368, 615, 658
BstMBI GATC 3 cut(s) 365, 612, 655
BstNI CCWGG 3 cut(s) 209, 378, 388
BstSCI CCNGG 4 cut(s) 207, 341, 376, 386
BstV1I GCAGC 1 cut(s) 454
BstX2I RGATCY 1 cut(s) 655
BstYI RGATCY 1 cut(s) 655
BsuI GTATCC 1 cut(s) 587
BsuRI GGCC 4 cut(s) 110, 505, 560, 624
BtrI CACGTC 1 cut(s) 746
BtsCI GGATG 4 cut(s) 53, 396, 518, 637
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 24
CaiI CAGNNNCTG 1 cut(s) 387
Cfr13I GGNCC 2 cut(s) 503, 593
CspCI CAANNNNNGTGG 2 cut(s) 261, 296
CviAII CATG 1 cut(s) 101
DdeI CTNAG 3 cut(s) 59, 65, 408
DpnI GATC 3 cut(s) 367, 614, 657
DpnII GATC 3 cut(s) 365, 612, 655
DrdI GACNNNNNNGTC 1 cut(s) 19
DseDI GACNNNNNNGTC 1 cut(s) 19
Eam1104I CTCTTC 1 cut(s) 542
EarI CTCTTC 1 cut(s) 542
Eco130I CCWWGG 1 cut(s) 105
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 593
EcoRI GAATTC 1 cut(s) 40
EcoRII CCWGG 3 cut(s) 207, 376, 386
EcoT14I CCWWGG 1 cut(s) 105
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 1 cut(s) 104
FaiI YATR 3 cut(s) 102, 668, 670
FalI AAGNNNNNCTT 4 cut(s) 523, 555, 644, 676
FatI CATG 1 cut(s) 100
FblI GTMKAC 1 cut(s) 742
Fnu4HI GCNGC 4 cut(s) 118, 264, 468, 736
FokI GGATG 4 cut(s) 40, 403, 525, 644
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 4 cut(s) 118, 264, 468, 736
FspBI CTAG 2 cut(s) 620, 645
GluI GCNGC 4 cut(s) 118, 264, 468, 736
HaeIII GGCC 4 cut(s) 110, 505, 560, 624
HapII CCGG 2 cut(s) 342, 580
Hin1II CATG 1 cut(s) 104
HincII GTYRAC 1 cut(s) 743
HindII GTYRAC 1 cut(s) 743
HindIII AAGCTT 1 cut(s) 603
HinfI GANTC 2 cut(s) 63, 127
HpaII CCGG 2 cut(s) 342, 580
Hpy166II GTNNAC 1 cut(s) 743
Hpy188I TCNGA 5 cut(s) 39, 62, 68, 126, 456
Hpy188III TCNNGA 4 cut(s) 256, 350, 580, 756
Hpy8I GTNNAC 1 cut(s) 743
Hpy99I CGWCG 1 cut(s) 747
HpyAV CCTTC 7 cut(s) 316, 406, 415, 521, 571, 646, 670
HpyCH4IV ACGT 1 cut(s) 745
HpyCH4V TGCA 1 cut(s) 287
HpyF3I CTNAG 3 cut(s) 59, 65, 408
HpySE526I ACGT 1 cut(s) 745
Hsp92II CATG 1 cut(s) 104
Kpn2I TCCGGA 1 cut(s) 579
Kzo9I GATC 3 cut(s) 365, 612, 655
Lsp1109I GCAGC 1 cut(s) 454
LweI GCATC 4 cut(s) 62, 381, 454, 503
MaeI CTAG 2 cut(s) 620, 645
MaeII ACGT 1 cut(s) 745
MalI GATC 3 cut(s) 367, 614, 657
MboI GATC 3 cut(s) 365, 612, 655
MboII GAAGA 6 cut(s) 36, 543, 556, 559, 559, 698
MfeI CAATTG 1 cut(s) 507
MflI RGATCY 1 cut(s) 655
MhlI GDGCHC 2 cut(s) 8, 255
MluCI AATT 6 cut(s) 40, 134, 416, 480, 507, 689
MlyI GAGTC 1 cut(s) 57
MmeI TCCRAC 1 cut(s) 571
MroI TCCGGA 1 cut(s) 579
MroXI GAANNNNTTC 1 cut(s) 535
MseI TTAA 1 cut(s) 518
MspA1I CMGCKG 2 cut(s) 449, 738
MspI CCGG 2 cut(s) 342, 580
MspR9I CCNGG 4 cut(s) 209, 343, 378, 388
MunI CAATTG 1 cut(s) 507
Mva1269I GAATGC 1 cut(s) 265
MvaI CCWGG 3 cut(s) 209, 378, 388
NciI CCSGG 1 cut(s) 343
NdeII GATC 3 cut(s) 365, 612, 655
NlaIII CATG 1 cut(s) 104
NlaIV GGNNCC 3 cut(s) 213, 657, 734
PctI GAATGC 1 cut(s) 265
PdmI GAANNNNTTC 1 cut(s) 535
PfeI GAWTC 1 cut(s) 127
PfoI TCCNGGA 1 cut(s) 207
PkrI GCNGC 4 cut(s) 119, 265, 469, 737
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
Psp6I CCWGG 3 cut(s) 207, 376, 386
PspGI CCWGG 3 cut(s) 207, 376, 386
PspN4I GGNNCC 3 cut(s) 213, 657, 734
PspPI GGNCC 2 cut(s) 503, 593
PstNI CAGNNNCTG 1 cut(s) 387
PsuI RGATCY 1 cut(s) 655
PvuII CAGCTG 1 cut(s) 449
SalI GTCGAC 1 cut(s) 741
SaqAI TTAA 1 cut(s) 518
SatI GCNGC 4 cut(s) 118, 264, 468, 736
Sau3AI GATC 3 cut(s) 365, 612, 655
Sau96I GGNCC 2 cut(s) 503, 593
SchI GAGTC 1 cut(s) 57
ScrFI CCNGG 4 cut(s) 209, 343, 378, 388
SduI GDGCHC 2 cut(s) 8, 255
SetI ASST 9 cut(s) 100, 199, 297, 389, 451, 461, 598, 607, 748
SfaNI GCATC 4 cut(s) 62, 381, 454, 503
SinI GGWCC 1 cut(s) 593
SmlI CTYRAG 3 cut(s) 48, 73, 254
SmoI CTYRAG 3 cut(s) 48, 73, 254
Sse9I AATT 6 cut(s) 40, 134, 416, 480, 507, 689
SsiI CCGC 3 cut(s) 118, 263, 736
SspMI CTAG 2 cut(s) 620, 645
StyD4I CCNGG 4 cut(s) 207, 341, 376, 386
StyI CCWWGG 1 cut(s) 105
TaiI ACGT 1 cut(s) 748
TaqI TCGA 5 cut(s) 351, 462, 570, 703, 742
TasI AATT 6 cut(s) 40, 134, 416, 480, 507, 689
TauI GCSGC 3 cut(s) 120, 266, 738
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 1 cut(s) 518
Tru9I TTAA 1 cut(s) 518
TscAI CASTG 1 cut(s) 24
TseI GCWGC 1 cut(s) 467
TspDTI ATGAA 2 cut(s) 553, 699
TspRI CASTG 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 593
XapI RAATTY 2 cut(s) 40, 134
XmiI GTMKAC 1 cut(s) 742
XmnI GAANNNNTTC 1 cut(s) 535
XspI CTAG 2 cut(s) 620, 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.