pycom14g19360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0013063
Physical Location & Seq
Reverse (-)
20706040 .. 20707329
1290 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g19360.4

Sequence Viewer

Length: 780 bp
ATGACAGCAGCAATGGCCTCACACACAGTCACAGCAATCTCCTCCTCCTTGATTATGCCTCTCAATTCTTTTCAATCATTTCTCAGACCCTCAAATCTCCCCCTCCAAATCCCACCTCAATCCAACCCCACACATCGCAATCCCATCCTCAAATTTCCCACCACTAGAACCAGAGCAACCGTTGACGGCGGCGAACAAAGCGCCACCGCCGCACCTATGCTTGTCCAGGAACCGCCGCAGCCCACCAAAGAAGTGGAGGAGAGTGTGAAATTGCTGAAGAAGGCCGCAAAAACAAGGCGGGTTGCGAAGGAGGAGGTTCTGTCAGCTCTATCGGTCATTGAGAAGGGAAAGCTCGACCCTTCCGGGTTTCTTAATACGCTTGGCGGAACAGAATCCCCGGGGAGAACATGGATGCTCATATTTACTGCTGAGAAGGAATTGAAGGGCGGTCGCTACTTCCCTATTACCGCAGTTCAGCGATTTGATGCTGCTGGAAAGAGAATTGAGAACGGAGTGTATTTTGGGCCATTTGGATGCTTAACATTTGAAGGAAGATTTTCCTGGAAGAAGAGAATACTAGCCTTCGTCTTTGAATCCATCCGGATAAAAATTGGACCTTTGAAAACCTTAGAGATCGGTCTAGGCCAGAAAGACGACAGAGAGCCTAGCACGAAGGATCCATTCTTTATATGGTTTTACATTGATGAAGAACTAGCAGTTGGCCGAGGCAAAAGTGGGGGGACTGCTTTCTGGTGCCGTTGTCGCCGTGTTATAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

28.75

Weight (kDa)

9.78

Isoelectric Point (pI)

51.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18060
fragaria_vesca FvH4_5g16950 FvH4_5g16950 FvH4_5g16950
malus_domestica MD06G1223100.v1.1
prunus_persica Prupe.5G228200_v2.0.a1
pyrus_communis pycom14g19360
rosa_chinensis RchiOBHm_Chr7g0179071
rosa_laevigata RLG00000005388
rosa_multiflora Rmu_sc0000888.1_g000015
rosa_roxburghii Rroxscaffold_3G00274420
rosa_rugosa Rorug06G0420600 Rorug06G0420700.1
rosa_samantha Rh7AG020100 Rh7BG019800 Rh7CG021100 Rh7DG020600
rosa_wichuraiana Rw7G001670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 773
AccB1I GGYRCC 1 cut(s) 753
AccIII TCCGGA 1 cut(s) 600
AclWI GGATC 2 cut(s) 671, 684
AcoI YGGCCR 1 cut(s) 721
AcsI RAATTY 1 cut(s) 152
AcuI CTGAAG 1 cut(s) 296
AgsI TTSAA 5 cut(s) 74, 442, 548, 593, 622
AjnI CCWGG 2 cut(s) 225, 560
AjuI GAANNNNNNNTTGG 2 cut(s) 702, 734
AluBI AGCT 2 cut(s) 326, 352
AluI AGCT 2 cut(s) 326, 352
AlwI GGATC 2 cut(s) 671, 684
Ama87I CYCGRG 1 cut(s) 397
Aor13HI TCCGGA 1 cut(s) 600
AoxI GGCC 5 cut(s) 15, 282, 524, 643, 721
ApeKI GCWGC 3 cut(s) 8, 238, 488
ApoI RAATTY 1 cut(s) 152
Asp700I GAANNNNTTC 1 cut(s) 556
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 2 cut(s) 524, 614
AsuC2I CCSGG 3 cut(s) 364, 398, 399
AvaI CYCGRG 1 cut(s) 397
AvaII GGWCC 1 cut(s) 614
BamHI GGATCC 1 cut(s) 676
BanI GGYRCC 1 cut(s) 753
BbvI GCAGC 3 cut(s) 20, 250, 475
BccI CCATC 2 cut(s) 152, 605
BceAI ACGGC 3 cut(s) 202, 741, 750
BciT130I CCWGG 2 cut(s) 227, 562
BcnI CCSGG 3 cut(s) 364, 398, 399
BfaI CTAG 5 cut(s) 165, 578, 641, 666, 713
BfoI RGCGCY 1 cut(s) 204
BisI GCNGC 7 cut(s) 9, 190, 210, 236, 239, 285, 489
BlsI GCNGC 7 cut(s) 10, 191, 211, 237, 240, 286, 490
Bme1390I CCNGG 5 cut(s) 227, 364, 398, 399, 562
Bme18I GGWCC 1 cut(s) 614
BmeT110I CYCGRG 1 cut(s) 397
BmgT120I GGNCC 2 cut(s) 524, 614
BmiI GGNNCC 3 cut(s) 231, 678, 755
BmrFI CCNGG 5 cut(s) 227, 364, 398, 399, 562
BmsI GCATC 3 cut(s) 402, 475, 524
BpuMI CCSGG 3 cut(s) 364, 398, 399
BsaJI CCNNGG 4 cut(s) 396, 397, 398, 724
BsaWI WCCGGW 1 cut(s) 600
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bse3DI GCAATG 1 cut(s) 18
BseAI TCCGGA 1 cut(s) 600
BseBI CCWGG 2 cut(s) 227, 562
BseDI CCNNGG 4 cut(s) 396, 397, 398, 724
BseGI GGATG 4 cut(s) 144, 417, 539, 597
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 2 cut(s) 97, 420
BseRI GAGGAG 4 cut(s) 31, 34, 272, 326
BseXI GCAGC 3 cut(s) 20, 250, 475
Bsh1285I CGRYCG 1 cut(s) 451
BshFI GGCC 5 cut(s) 17, 284, 526, 645, 723
BshNI GGYRCC 1 cut(s) 753
BsiEI CGRYCG 1 cut(s) 451
BsiHKCI CYCGRG 1 cut(s) 397
BsiSI CCGG 3 cut(s) 363, 398, 601
BslFI GGGAC 1 cut(s) 754
BsmFI GGGAC 1 cut(s) 754
BsnI GGCC 5 cut(s) 17, 284, 526, 645, 723
BsoBI CYCGRG 1 cut(s) 397
Bsp13I TCCGGA 1 cut(s) 600
Bsp143I GATC 2 cut(s) 633, 676
BspANI GGCC 5 cut(s) 17, 284, 526, 645, 723
BspCNI CTCAG 2 cut(s) 96, 421
BspEI TCCGGA 1 cut(s) 600
BspLI GGNNCC 3 cut(s) 231, 678, 755
BspPI GGATC 2 cut(s) 671, 684
BspT107I GGYRCC 1 cut(s) 753
BsrDI GCAATG 1 cut(s) 18
BssECI CCNNGG 4 cut(s) 396, 397, 398, 724
BssMI GATC 2 cut(s) 633, 676
Bst2UI CCWGG 2 cut(s) 227, 562
Bst4CI ACNGT 2 cut(s) 28, 181
Bst6I CTCTTC 1 cut(s) 563
BstDEI CTNAG 3 cut(s) 83, 429, 628
BstF5I GGATG 4 cut(s) 144, 417, 539, 597
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 2 cut(s) 636, 679
BstMBI GATC 2 cut(s) 633, 676
BstMCI CGRYCG 1 cut(s) 451
BstMWI GCNNNNNNNGC 4 cut(s) 14, 198, 209, 762
BstNI CCWGG 2 cut(s) 227, 562
BstSCI CCNGG 5 cut(s) 225, 362, 396, 397, 560
BstV1I GCAGC 3 cut(s) 20, 250, 475
BstX2I RGATCY 1 cut(s) 676
BstXI CCANNNNNNTGG 1 cut(s) 253
BstYI RGATCY 1 cut(s) 676
BsuRI GGCC 5 cut(s) 17, 284, 526, 645, 723
BtgZI GCGATG 1 cut(s) 119
BtsCI GGATG 4 cut(s) 144, 417, 539, 597
CfoI GCGC 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 524, 614
Cfr9I CCCGGG 1 cut(s) 397
CviAII CATG 1 cut(s) 408
DdeI CTNAG 3 cut(s) 83, 429, 628
DpnI GATC 2 cut(s) 635, 678
DpnII GATC 2 cut(s) 633, 676
EaeI YGGCCR 1 cut(s) 721
Eam1104I CTCTTC 1 cut(s) 563
EarI CTCTTC 1 cut(s) 563
EciI GGCGGA 1 cut(s) 399
Eco47I GGWCC 1 cut(s) 614
Eco57I CTGAAG 1 cut(s) 296
Eco88I CYCGRG 1 cut(s) 397
EcoRII CCWGG 2 cut(s) 225, 560
FaeI CATG 1 cut(s) 411
FaiI YATR 7 cut(s) 56, 218, 409, 419, 689, 691, 773
FaqI GGGAC 1 cut(s) 754
FatI CATG 1 cut(s) 407
FauI CCCGC 1 cut(s) 291
Fnu4HI GCNGC 7 cut(s) 9, 190, 210, 236, 239, 285, 489
FokI GGATG 4 cut(s) 131, 424, 546, 584
Fsp4HI GCNGC 7 cut(s) 9, 190, 210, 236, 239, 285, 489
FspBI CTAG 5 cut(s) 165, 578, 641, 666, 713
GlaI GCGC 1 cut(s) 202
GluI GCNGC 7 cut(s) 9, 190, 210, 236, 239, 285, 489
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 5 cut(s) 17, 284, 526, 645, 723
HapII CCGG 3 cut(s) 363, 398, 601
HhaI GCGC 1 cut(s) 203
Hin1II CATG 1 cut(s) 411
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 2 cut(s) 392, 593
HpaII CCGG 3 cut(s) 363, 398, 601
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 86
Hpy188III TCNNGA 1 cut(s) 601
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 9 cut(s) 274, 301, 337, 369, 427, 436, 542, 592, 667
HpyCH4III ACNGT 2 cut(s) 28, 181
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 198, 209, 762
HpyF3I CTNAG 3 cut(s) 83, 429, 628
Hsp92II CATG 1 cut(s) 411
HspAI GCGC 1 cut(s) 201
Kpn2I TCCGGA 1 cut(s) 600
Kzo9I GATC 2 cut(s) 633, 676
Lsp1109I GCAGC 3 cut(s) 20, 250, 475
LweI GCATC 3 cut(s) 402, 475, 524
MaeI CTAG 5 cut(s) 165, 578, 641, 666, 713
MaeIII GTNAC 1 cut(s) 28
MalI GATC 2 cut(s) 635, 678
MboI GATC 2 cut(s) 633, 676
MboII GAAGA 5 cut(s) 289, 564, 577, 580, 719
MflI RGATCY 1 cut(s) 676
MluCI AATT 6 cut(s) 64, 152, 269, 437, 501, 609
MmeI TCCRAC 1 cut(s) 147
MroI TCCGGA 1 cut(s) 600
MroXI GAANNNNTTC 1 cut(s) 556
MseI TTAA 3 cut(s) 372, 539, 778
MslI CAYNNNNRTG 1 cut(s) 532
MspI CCGG 3 cut(s) 363, 398, 601
MspR9I CCNGG 5 cut(s) 227, 364, 398, 399, 562
MvaI CCWGG 2 cut(s) 227, 562
MwoI GCNNNNNNNGC 4 cut(s) 14, 198, 209, 762
NciI CCSGG 3 cut(s) 364, 398, 399
NdeII GATC 2 cut(s) 633, 676
NlaIII CATG 1 cut(s) 411
NlaIV GGNNCC 3 cut(s) 231, 678, 755
NmeAIII GCCGAG 1 cut(s) 749
NmuCI GTSAC 1 cut(s) 28
PdmI GAANNNNTTC 1 cut(s) 556
PfeI GAWTC 2 cut(s) 392, 593
PfoI TCCNGGA 2 cut(s) 225, 560
PkrI GCNGC 7 cut(s) 10, 191, 211, 237, 240, 286, 490
PsiI TTATAA 1 cut(s) 773
Psp6I CCWGG 2 cut(s) 225, 560
PspGI CCWGG 2 cut(s) 225, 560
PspN4I GGNNCC 3 cut(s) 231, 678, 755
PspPI GGNCC 2 cut(s) 524, 614
PsuI RGATCY 1 cut(s) 676
RseI CAYNNNNRTG 1 cut(s) 532
SaqAI TTAA 3 cut(s) 372, 539, 778
SatI GCNGC 7 cut(s) 9, 190, 210, 236, 239, 285, 489
Sau3AI GATC 2 cut(s) 633, 676
Sau96I GGNCC 2 cut(s) 524, 614
ScrFI CCNGG 5 cut(s) 227, 364, 398, 399, 562
SetI ASST 7 cut(s) 118, 217, 318, 328, 354, 619, 629
SfaNI GCATC 3 cut(s) 402, 475, 524
SinI GGWCC 1 cut(s) 614
SmaI CCCGGG 1 cut(s) 399
SmiMI CAYNNNNRTG 1 cut(s) 532
Sse9I AATT 6 cut(s) 64, 152, 269, 437, 501, 609
SspMI CTAG 5 cut(s) 165, 578, 641, 666, 713
StyD4I CCNGG 5 cut(s) 225, 362, 396, 397, 560
TaaI ACNGT 2 cut(s) 28, 181
TaqI TCGA 1 cut(s) 354
TaqII GACCGA 2 cut(s) 322, 626
TasI AATT 6 cut(s) 64, 152, 269, 437, 501, 609
TauI GCSGC 4 cut(s) 192, 212, 238, 287
TfiI GAWTC 2 cut(s) 392, 593
Tru1I TTAA 3 cut(s) 372, 539, 778
Tru9I TTAA 3 cut(s) 372, 539, 778
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 3 cut(s) 8, 238, 488
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 720
TspGWI ACGGA 1 cut(s) 525
TspMI CCCGGG 1 cut(s) 397
VpaK11BI GGWCC 1 cut(s) 614
XapI RAATTY 1 cut(s) 152
XcmI CCANNNNNNNNNTGG 2 cut(s) 250, 687
XmaI CCCGGG 1 cut(s) 397
XmnI GAANNNNTTC 1 cut(s) 556
XspI CTAG 5 cut(s) 165, 578, 641, 666, 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.